proteus  1.7.4
C/C++/Fortran libraries
subsurfaceTransportFunctions.c
Go to the documentation of this file.
1 /* Generated by Cython 0.29.16 */
2 
3 #define PY_SSIZE_T_CLEAN
4 #include "Python.h"
5 #ifndef Py_PYTHON_H
6  #error Python headers needed to compile C extensions, please install development version of Python.
7 #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
8  #error Cython requires Python 2.6+ or Python 3.3+.
9 #else
10 #define CYTHON_ABI "0_29_16"
11 #define CYTHON_HEX_VERSION 0x001D10F0
12 #define CYTHON_FUTURE_DIVISION 0
13 #include <stddef.h>
14 #ifndef offsetof
15  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
16 #endif
17 #if !defined(WIN32) && !defined(MS_WINDOWS)
18  #ifndef __stdcall
19  #define __stdcall
20  #endif
21  #ifndef __cdecl
22  #define __cdecl
23  #endif
24  #ifndef __fastcall
25  #define __fastcall
26  #endif
27 #endif
28 #ifndef DL_IMPORT
29  #define DL_IMPORT(t) t
30 #endif
31 #ifndef DL_EXPORT
32  #define DL_EXPORT(t) t
33 #endif
34 #define __PYX_COMMA ,
35 #ifndef HAVE_LONG_LONG
36  #if PY_VERSION_HEX >= 0x02070000
37  #define HAVE_LONG_LONG
38  #endif
39 #endif
40 #ifndef PY_LONG_LONG
41  #define PY_LONG_LONG LONG_LONG
42 #endif
43 #ifndef Py_HUGE_VAL
44  #define Py_HUGE_VAL HUGE_VAL
45 #endif
46 #ifdef PYPY_VERSION
47  #define CYTHON_COMPILING_IN_PYPY 1
48  #define CYTHON_COMPILING_IN_PYSTON 0
49  #define CYTHON_COMPILING_IN_CPYTHON 0
50  #undef CYTHON_USE_TYPE_SLOTS
51  #define CYTHON_USE_TYPE_SLOTS 0
52  #undef CYTHON_USE_PYTYPE_LOOKUP
53  #define CYTHON_USE_PYTYPE_LOOKUP 0
54  #if PY_VERSION_HEX < 0x03050000
55  #undef CYTHON_USE_ASYNC_SLOTS
56  #define CYTHON_USE_ASYNC_SLOTS 0
57  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
58  #define CYTHON_USE_ASYNC_SLOTS 1
59  #endif
60  #undef CYTHON_USE_PYLIST_INTERNALS
61  #define CYTHON_USE_PYLIST_INTERNALS 0
62  #undef CYTHON_USE_UNICODE_INTERNALS
63  #define CYTHON_USE_UNICODE_INTERNALS 0
64  #undef CYTHON_USE_UNICODE_WRITER
65  #define CYTHON_USE_UNICODE_WRITER 0
66  #undef CYTHON_USE_PYLONG_INTERNALS
67  #define CYTHON_USE_PYLONG_INTERNALS 0
68  #undef CYTHON_AVOID_BORROWED_REFS
69  #define CYTHON_AVOID_BORROWED_REFS 1
70  #undef CYTHON_ASSUME_SAFE_MACROS
71  #define CYTHON_ASSUME_SAFE_MACROS 0
72  #undef CYTHON_UNPACK_METHODS
73  #define CYTHON_UNPACK_METHODS 0
74  #undef CYTHON_FAST_THREAD_STATE
75  #define CYTHON_FAST_THREAD_STATE 0
76  #undef CYTHON_FAST_PYCALL
77  #define CYTHON_FAST_PYCALL 0
78  #undef CYTHON_PEP489_MULTI_PHASE_INIT
79  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
80  #undef CYTHON_USE_TP_FINALIZE
81  #define CYTHON_USE_TP_FINALIZE 0
82  #undef CYTHON_USE_DICT_VERSIONS
83  #define CYTHON_USE_DICT_VERSIONS 0
84  #undef CYTHON_USE_EXC_INFO_STACK
85  #define CYTHON_USE_EXC_INFO_STACK 0
86 #elif defined(PYSTON_VERSION)
87  #define CYTHON_COMPILING_IN_PYPY 0
88  #define CYTHON_COMPILING_IN_PYSTON 1
89  #define CYTHON_COMPILING_IN_CPYTHON 0
90  #ifndef CYTHON_USE_TYPE_SLOTS
91  #define CYTHON_USE_TYPE_SLOTS 1
92  #endif
93  #undef CYTHON_USE_PYTYPE_LOOKUP
94  #define CYTHON_USE_PYTYPE_LOOKUP 0
95  #undef CYTHON_USE_ASYNC_SLOTS
96  #define CYTHON_USE_ASYNC_SLOTS 0
97  #undef CYTHON_USE_PYLIST_INTERNALS
98  #define CYTHON_USE_PYLIST_INTERNALS 0
99  #ifndef CYTHON_USE_UNICODE_INTERNALS
100  #define CYTHON_USE_UNICODE_INTERNALS 1
101  #endif
102  #undef CYTHON_USE_UNICODE_WRITER
103  #define CYTHON_USE_UNICODE_WRITER 0
104  #undef CYTHON_USE_PYLONG_INTERNALS
105  #define CYTHON_USE_PYLONG_INTERNALS 0
106  #ifndef CYTHON_AVOID_BORROWED_REFS
107  #define CYTHON_AVOID_BORROWED_REFS 0
108  #endif
109  #ifndef CYTHON_ASSUME_SAFE_MACROS
110  #define CYTHON_ASSUME_SAFE_MACROS 1
111  #endif
112  #ifndef CYTHON_UNPACK_METHODS
113  #define CYTHON_UNPACK_METHODS 1
114  #endif
115  #undef CYTHON_FAST_THREAD_STATE
116  #define CYTHON_FAST_THREAD_STATE 0
117  #undef CYTHON_FAST_PYCALL
118  #define CYTHON_FAST_PYCALL 0
119  #undef CYTHON_PEP489_MULTI_PHASE_INIT
120  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
121  #undef CYTHON_USE_TP_FINALIZE
122  #define CYTHON_USE_TP_FINALIZE 0
123  #undef CYTHON_USE_DICT_VERSIONS
124  #define CYTHON_USE_DICT_VERSIONS 0
125  #undef CYTHON_USE_EXC_INFO_STACK
126  #define CYTHON_USE_EXC_INFO_STACK 0
127 #else
128  #define CYTHON_COMPILING_IN_PYPY 0
129  #define CYTHON_COMPILING_IN_PYSTON 0
130  #define CYTHON_COMPILING_IN_CPYTHON 1
131  #ifndef CYTHON_USE_TYPE_SLOTS
132  #define CYTHON_USE_TYPE_SLOTS 1
133  #endif
134  #if PY_VERSION_HEX < 0x02070000
135  #undef CYTHON_USE_PYTYPE_LOOKUP
136  #define CYTHON_USE_PYTYPE_LOOKUP 0
137  #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
138  #define CYTHON_USE_PYTYPE_LOOKUP 1
139  #endif
140  #if PY_MAJOR_VERSION < 3
141  #undef CYTHON_USE_ASYNC_SLOTS
142  #define CYTHON_USE_ASYNC_SLOTS 0
143  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
144  #define CYTHON_USE_ASYNC_SLOTS 1
145  #endif
146  #if PY_VERSION_HEX < 0x02070000
147  #undef CYTHON_USE_PYLONG_INTERNALS
148  #define CYTHON_USE_PYLONG_INTERNALS 0
149  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
150  #define CYTHON_USE_PYLONG_INTERNALS 1
151  #endif
152  #ifndef CYTHON_USE_PYLIST_INTERNALS
153  #define CYTHON_USE_PYLIST_INTERNALS 1
154  #endif
155  #ifndef CYTHON_USE_UNICODE_INTERNALS
156  #define CYTHON_USE_UNICODE_INTERNALS 1
157  #endif
158  #if PY_VERSION_HEX < 0x030300F0
159  #undef CYTHON_USE_UNICODE_WRITER
160  #define CYTHON_USE_UNICODE_WRITER 0
161  #elif !defined(CYTHON_USE_UNICODE_WRITER)
162  #define CYTHON_USE_UNICODE_WRITER 1
163  #endif
164  #ifndef CYTHON_AVOID_BORROWED_REFS
165  #define CYTHON_AVOID_BORROWED_REFS 0
166  #endif
167  #ifndef CYTHON_ASSUME_SAFE_MACROS
168  #define CYTHON_ASSUME_SAFE_MACROS 1
169  #endif
170  #ifndef CYTHON_UNPACK_METHODS
171  #define CYTHON_UNPACK_METHODS 1
172  #endif
173  #ifndef CYTHON_FAST_THREAD_STATE
174  #define CYTHON_FAST_THREAD_STATE 1
175  #endif
176  #ifndef CYTHON_FAST_PYCALL
177  #define CYTHON_FAST_PYCALL 1
178  #endif
179  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
180  #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
181  #endif
182  #ifndef CYTHON_USE_TP_FINALIZE
183  #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
184  #endif
185  #ifndef CYTHON_USE_DICT_VERSIONS
186  #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
187  #endif
188  #ifndef CYTHON_USE_EXC_INFO_STACK
189  #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
190  #endif
191 #endif
192 #if !defined(CYTHON_FAST_PYCCALL)
193 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
194 #endif
195 #if CYTHON_USE_PYLONG_INTERNALS
196  #include "longintrepr.h"
197  #undef SHIFT
198  #undef BASE
199  #undef MASK
200  #ifdef SIZEOF_VOID_P
201  enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
202  #endif
203 #endif
204 #ifndef __has_attribute
205  #define __has_attribute(x) 0
206 #endif
207 #ifndef __has_cpp_attribute
208  #define __has_cpp_attribute(x) 0
209 #endif
210 #ifndef CYTHON_RESTRICT
211  #if defined(__GNUC__)
212  #define CYTHON_RESTRICT __restrict__
213  #elif defined(_MSC_VER) && _MSC_VER >= 1400
214  #define CYTHON_RESTRICT __restrict
215  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
216  #define CYTHON_RESTRICT restrict
217  #else
218  #define CYTHON_RESTRICT
219  #endif
220 #endif
221 #ifndef CYTHON_UNUSED
222 # if defined(__GNUC__)
223 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
224 # define CYTHON_UNUSED __attribute__ ((__unused__))
225 # else
226 # define CYTHON_UNUSED
227 # endif
228 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
229 # define CYTHON_UNUSED __attribute__ ((__unused__))
230 # else
231 # define CYTHON_UNUSED
232 # endif
233 #endif
234 #ifndef CYTHON_MAYBE_UNUSED_VAR
235 # if defined(__cplusplus)
236  template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
237 # else
238 # define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
239 # endif
240 #endif
241 #ifndef CYTHON_NCP_UNUSED
242 # if CYTHON_COMPILING_IN_CPYTHON
243 # define CYTHON_NCP_UNUSED
244 # else
245 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
246 # endif
247 #endif
248 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
249 #ifdef _MSC_VER
250  #ifndef _MSC_STDINT_H_
251  #if _MSC_VER < 1300
252  typedef unsigned char uint8_t;
253  typedef unsigned int uint32_t;
254  #else
255  typedef unsigned __int8 uint8_t;
256  typedef unsigned __int32 uint32_t;
257  #endif
258  #endif
259 #else
260  #include <stdint.h>
261 #endif
262 #ifndef CYTHON_FALLTHROUGH
263  #if defined(__cplusplus) && __cplusplus >= 201103L
264  #if __has_cpp_attribute(fallthrough)
265  #define CYTHON_FALLTHROUGH [[fallthrough]]
266  #elif __has_cpp_attribute(clang::fallthrough)
267  #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
268  #elif __has_cpp_attribute(gnu::fallthrough)
269  #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
270  #endif
271  #endif
272  #ifndef CYTHON_FALLTHROUGH
273  #if __has_attribute(fallthrough)
274  #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
275  #else
276  #define CYTHON_FALLTHROUGH
277  #endif
278  #endif
279  #if defined(__clang__ ) && defined(__apple_build_version__)
280  #if __apple_build_version__ < 7000000
281  #undef CYTHON_FALLTHROUGH
282  #define CYTHON_FALLTHROUGH
283  #endif
284  #endif
285 #endif
286 
287 #ifndef CYTHON_INLINE
288  #if defined(__clang__)
289  #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
290  #elif defined(__GNUC__)
291  #define CYTHON_INLINE __inline__
292  #elif defined(_MSC_VER)
293  #define CYTHON_INLINE __inline
294  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
295  #define CYTHON_INLINE inline
296  #else
297  #define CYTHON_INLINE
298  #endif
299 #endif
300 
301 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
302  #define Py_OptimizeFlag 0
303 #endif
304 #define __PYX_BUILD_PY_SSIZE_T "n"
305 #define CYTHON_FORMAT_SSIZE_T "z"
306 #if PY_MAJOR_VERSION < 3
307  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
308  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
309  PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
310  #define __Pyx_DefaultClassType PyClass_Type
311 #else
312  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
313 #if PY_VERSION_HEX >= 0x030800A4 && PY_VERSION_HEX < 0x030800B2
314  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
315  PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
316 #else
317  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
318  PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
319 #endif
320  #define __Pyx_DefaultClassType PyType_Type
321 #endif
322 #ifndef Py_TPFLAGS_CHECKTYPES
323  #define Py_TPFLAGS_CHECKTYPES 0
324 #endif
325 #ifndef Py_TPFLAGS_HAVE_INDEX
326  #define Py_TPFLAGS_HAVE_INDEX 0
327 #endif
328 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
329  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
330 #endif
331 #ifndef Py_TPFLAGS_HAVE_FINALIZE
332  #define Py_TPFLAGS_HAVE_FINALIZE 0
333 #endif
334 #ifndef METH_STACKLESS
335  #define METH_STACKLESS 0
336 #endif
337 #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
338  #ifndef METH_FASTCALL
339  #define METH_FASTCALL 0x80
340  #endif
341  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
342  typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
343  Py_ssize_t nargs, PyObject *kwnames);
344 #else
345  #define __Pyx_PyCFunctionFast _PyCFunctionFast
346  #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
347 #endif
348 #if CYTHON_FAST_PYCCALL
349 #define __Pyx_PyFastCFunction_Check(func)\
350  ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
351 #else
352 #define __Pyx_PyFastCFunction_Check(func) 0
353 #endif
354 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
355  #define PyObject_Malloc(s) PyMem_Malloc(s)
356  #define PyObject_Free(p) PyMem_Free(p)
357  #define PyObject_Realloc(p) PyMem_Realloc(p)
358 #endif
359 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
360  #define PyMem_RawMalloc(n) PyMem_Malloc(n)
361  #define PyMem_RawRealloc(p, n) PyMem_Realloc(p, n)
362  #define PyMem_RawFree(p) PyMem_Free(p)
363 #endif
364 #if CYTHON_COMPILING_IN_PYSTON
365  #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
366  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
367 #else
368  #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
369  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
370 #endif
371 #if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
372  #define __Pyx_PyThreadState_Current PyThreadState_GET()
373 #elif PY_VERSION_HEX >= 0x03060000
374  #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
375 #elif PY_VERSION_HEX >= 0x03000000
376  #define __Pyx_PyThreadState_Current PyThreadState_GET()
377 #else
378  #define __Pyx_PyThreadState_Current _PyThreadState_Current
379 #endif
380 #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
381 #include "pythread.h"
382 #define Py_tss_NEEDS_INIT 0
383 typedef int Py_tss_t;
384 static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
385  *key = PyThread_create_key();
386  return 0;
387 }
388 static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
389  Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
390  *key = Py_tss_NEEDS_INIT;
391  return key;
392 }
393 static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
394  PyObject_Free(key);
395 }
396 static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
397  return *key != Py_tss_NEEDS_INIT;
398 }
399 static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
400  PyThread_delete_key(*key);
401  *key = Py_tss_NEEDS_INIT;
402 }
403 static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
404  return PyThread_set_key_value(*key, value);
405 }
406 static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
407  return PyThread_get_key_value(*key);
408 }
409 #endif
410 #if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
411 #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
412 #else
413 #define __Pyx_PyDict_NewPresized(n) PyDict_New()
414 #endif
415 #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
416  #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
417  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
418 #else
419  #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
420  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
421 #endif
422 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
423 #define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
424 #else
425 #define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name)
426 #endif
427 #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
428  #define CYTHON_PEP393_ENABLED 1
429  #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
430  0 : _PyUnicode_Ready((PyObject *)(op)))
431  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
432  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
433  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
434  #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
435  #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
436  #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
437  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
438  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
439 #else
440  #define CYTHON_PEP393_ENABLED 0
441  #define PyUnicode_1BYTE_KIND 1
442  #define PyUnicode_2BYTE_KIND 2
443  #define PyUnicode_4BYTE_KIND 4
444  #define __Pyx_PyUnicode_READY(op) (0)
445  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
446  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
447  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
448  #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
449  #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
450  #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
451  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
452  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
453 #endif
454 #if CYTHON_COMPILING_IN_PYPY
455  #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
456  #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
457 #else
458  #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
459  #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
460  PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
461 #endif
462 #if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
463  #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
464 #endif
465 #if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
466  #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
467 #endif
468 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
469  #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
470 #endif
471 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
472 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
473 #if PY_MAJOR_VERSION >= 3
474  #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
475 #else
476  #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
477 #endif
478 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
479  #define PyObject_ASCII(o) PyObject_Repr(o)
480 #endif
481 #if PY_MAJOR_VERSION >= 3
482  #define PyBaseString_Type PyUnicode_Type
483  #define PyStringObject PyUnicodeObject
484  #define PyString_Type PyUnicode_Type
485  #define PyString_Check PyUnicode_Check
486  #define PyString_CheckExact PyUnicode_CheckExact
487 #ifndef PyObject_Unicode
488  #define PyObject_Unicode PyObject_Str
489 #endif
490 #endif
491 #if PY_MAJOR_VERSION >= 3
492  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
493  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
494 #else
495  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
496  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
497 #endif
498 #ifndef PySet_CheckExact
499  #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
500 #endif
501 #if CYTHON_ASSUME_SAFE_MACROS
502  #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
503 #else
504  #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq)
505 #endif
506 #if PY_MAJOR_VERSION >= 3
507  #define PyIntObject PyLongObject
508  #define PyInt_Type PyLong_Type
509  #define PyInt_Check(op) PyLong_Check(op)
510  #define PyInt_CheckExact(op) PyLong_CheckExact(op)
511  #define PyInt_FromString PyLong_FromString
512  #define PyInt_FromUnicode PyLong_FromUnicode
513  #define PyInt_FromLong PyLong_FromLong
514  #define PyInt_FromSize_t PyLong_FromSize_t
515  #define PyInt_FromSsize_t PyLong_FromSsize_t
516  #define PyInt_AsLong PyLong_AsLong
517  #define PyInt_AS_LONG PyLong_AS_LONG
518  #define PyInt_AsSsize_t PyLong_AsSsize_t
519  #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
520  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
521  #define PyNumber_Int PyNumber_Long
522 #endif
523 #if PY_MAJOR_VERSION >= 3
524  #define PyBoolObject PyLongObject
525 #endif
526 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
527  #ifndef PyUnicode_InternFromString
528  #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
529  #endif
530 #endif
531 #if PY_VERSION_HEX < 0x030200A4
532  typedef long Py_hash_t;
533  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
534  #define __Pyx_PyInt_AsHash_t PyInt_AsLong
535 #else
536  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
537  #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
538 #endif
539 #if PY_MAJOR_VERSION >= 3
540  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func))
541 #else
542  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
543 #endif
544 #if CYTHON_USE_ASYNC_SLOTS
545  #if PY_VERSION_HEX >= 0x030500B1
546  #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
547  #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
548  #else
549  #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
550  #endif
551 #else
552  #define __Pyx_PyType_AsAsync(obj) NULL
553 #endif
554 #ifndef __Pyx_PyAsyncMethodsStruct
555  typedef struct {
556  unaryfunc am_await;
557  unaryfunc am_aiter;
558  unaryfunc am_anext;
559  } __Pyx_PyAsyncMethodsStruct;
560 #endif
561 
562 #if defined(WIN32) || defined(MS_WINDOWS)
563  #define _USE_MATH_DEFINES
564 #endif
565 #include <math.h>
566 #ifdef NAN
567 #define __PYX_NAN() ((float) NAN)
568 #else
569 static CYTHON_INLINE float __PYX_NAN() {
570  float value;
571  memset(&value, 0xFF, sizeof(value));
572  return value;
573 }
574 #endif
575 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
576 #define __Pyx_truncl trunc
577 #else
578 #define __Pyx_truncl truncl
579 #endif
580 
581 
582 #define __PYX_ERR(f_index, lineno, Ln_error) \
583 { \
584  __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
585 }
586 
587 #ifndef __PYX_EXTERN_C
588  #ifdef __cplusplus
589  #define __PYX_EXTERN_C extern "C"
590  #else
591  #define __PYX_EXTERN_C extern
592  #endif
593 #endif
594 
595 #define __PYX_HAVE__subsurfaceTransportFunctions
596 #define __PYX_HAVE_API__subsurfaceTransportFunctions
597 /* Early includes */
598 #include <string.h>
599 #include <stdio.h>
600 #include "numpy/arrayobject.h"
601 #include "numpy/ufuncobject.h"
602 #include "math.h"
603 #ifdef _OPENMP
604 #include <omp.h>
605 #endif /* _OPENMP */
606 
607 #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
608 #define CYTHON_WITHOUT_ASSERTIONS
609 #endif
610 
611 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
612  const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
613 
614 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
615 #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
616 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
617 #define __PYX_DEFAULT_STRING_ENCODING ""
618 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
619 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
620 #define __Pyx_uchar_cast(c) ((unsigned char)c)
621 #define __Pyx_long_cast(x) ((long)x)
622 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
623  (sizeof(type) < sizeof(Py_ssize_t)) ||\
624  (sizeof(type) > sizeof(Py_ssize_t) &&\
625  likely(v < (type)PY_SSIZE_T_MAX ||\
626  v == (type)PY_SSIZE_T_MAX) &&\
627  (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
628  v == (type)PY_SSIZE_T_MIN))) ||\
629  (sizeof(type) == sizeof(Py_ssize_t) &&\
630  (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
631  v == (type)PY_SSIZE_T_MAX))) )
632 static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
633  return (size_t) i < (size_t) limit;
634 }
635 #if defined (__cplusplus) && __cplusplus >= 201103L
636  #include <cstdlib>
637  #define __Pyx_sst_abs(value) std::abs(value)
638 #elif SIZEOF_INT >= SIZEOF_SIZE_T
639  #define __Pyx_sst_abs(value) abs(value)
640 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
641  #define __Pyx_sst_abs(value) labs(value)
642 #elif defined (_MSC_VER)
643  #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
644 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
645  #define __Pyx_sst_abs(value) llabs(value)
646 #elif defined (__GNUC__)
647  #define __Pyx_sst_abs(value) __builtin_llabs(value)
648 #else
649  #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
650 #endif
651 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
652 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
653 #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
654 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
655 #define __Pyx_PyBytes_FromString PyBytes_FromString
656 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
657 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
658 #if PY_MAJOR_VERSION < 3
659  #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
660  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
661 #else
662  #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
663  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
664 #endif
665 #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s))
666 #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s))
667 #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s))
668 #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s))
669 #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s))
670 #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s))
671 #define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s))
672 #define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
673 #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
674 #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s))
675 #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s))
676 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
677 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
678 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
679 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
680 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
681 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
682  const Py_UNICODE *u_end = u;
683  while (*u_end++) ;
684  return (size_t)(u_end - u - 1);
685 }
686 #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
687 #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
688 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
689 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
690 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
691 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
692 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
693 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
694 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
695 #define __Pyx_PySequence_Tuple(obj)\
696  (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
697 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
698 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
699 #if CYTHON_ASSUME_SAFE_MACROS
700 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
701 #else
702 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
703 #endif
704 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
705 #if PY_MAJOR_VERSION >= 3
706 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
707 #else
708 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
709 #endif
710 #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
711 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
712 static int __Pyx_sys_getdefaultencoding_not_ascii;
713 static int __Pyx_init_sys_getdefaultencoding_params(void) {
714  PyObject* sys;
715  PyObject* default_encoding = NULL;
716  PyObject* ascii_chars_u = NULL;
717  PyObject* ascii_chars_b = NULL;
718  const char* default_encoding_c;
719  sys = PyImport_ImportModule("sys");
720  if (!sys) goto bad;
721  default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
722  Py_DECREF(sys);
723  if (!default_encoding) goto bad;
724  default_encoding_c = PyBytes_AsString(default_encoding);
725  if (!default_encoding_c) goto bad;
726  if (strcmp(default_encoding_c, "ascii") == 0) {
727  __Pyx_sys_getdefaultencoding_not_ascii = 0;
728  } else {
729  char ascii_chars[128];
730  int c;
731  for (c = 0; c < 128; c++) {
732  ascii_chars[c] = c;
733  }
734  __Pyx_sys_getdefaultencoding_not_ascii = 1;
735  ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
736  if (!ascii_chars_u) goto bad;
737  ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
738  if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
739  PyErr_Format(
740  PyExc_ValueError,
741  "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
742  default_encoding_c);
743  goto bad;
744  }
745  Py_DECREF(ascii_chars_u);
746  Py_DECREF(ascii_chars_b);
747  }
748  Py_DECREF(default_encoding);
749  return 0;
750 bad:
751  Py_XDECREF(default_encoding);
752  Py_XDECREF(ascii_chars_u);
753  Py_XDECREF(ascii_chars_b);
754  return -1;
755 }
756 #endif
757 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
758 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
759 #else
760 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
761 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
762 static char* __PYX_DEFAULT_STRING_ENCODING;
763 static int __Pyx_init_sys_getdefaultencoding_params(void) {
764  PyObject* sys;
765  PyObject* default_encoding = NULL;
766  char* default_encoding_c;
767  sys = PyImport_ImportModule("sys");
768  if (!sys) goto bad;
769  default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
770  Py_DECREF(sys);
771  if (!default_encoding) goto bad;
772  default_encoding_c = PyBytes_AsString(default_encoding);
773  if (!default_encoding_c) goto bad;
774  __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
775  if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
776  strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
777  Py_DECREF(default_encoding);
778  return 0;
779 bad:
780  Py_XDECREF(default_encoding);
781  return -1;
782 }
783 #endif
784 #endif
785 
786 
787 /* Test for GCC > 2.95 */
788 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
789  #define likely(x) __builtin_expect(!!(x), 1)
790  #define unlikely(x) __builtin_expect(!!(x), 0)
791 #else /* !__GNUC__ or GCC < 2.95 */
792  #define likely(x) (x)
793  #define unlikely(x) (x)
794 #endif /* __GNUC__ */
795 static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }
796 
797 static PyObject *__pyx_m = NULL;
798 static PyObject *__pyx_d;
799 static PyObject *__pyx_b;
800 static PyObject *__pyx_cython_runtime = NULL;
801 static PyObject *__pyx_empty_tuple;
802 static PyObject *__pyx_empty_bytes;
803 static PyObject *__pyx_empty_unicode;
804 static int __pyx_lineno;
805 static int __pyx_clineno = 0;
806 static const char * __pyx_cfilenm= __FILE__;
807 static const char *__pyx_filename;
808 
809 /* Header.proto */
810 #if !defined(CYTHON_CCOMPLEX)
811  #if defined(__cplusplus)
812  #define CYTHON_CCOMPLEX 1
813  #elif defined(_Complex_I)
814  #define CYTHON_CCOMPLEX 1
815  #else
816  #define CYTHON_CCOMPLEX 0
817  #endif
818 #endif
819 #if CYTHON_CCOMPLEX
820  #ifdef __cplusplus
821  #include <complex>
822  #else
823  #include <complex.h>
824  #endif
825 #endif
826 #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
827  #undef _Complex_I
828  #define _Complex_I 1.0fj
829 #endif
830 
831 
832 static const char *__pyx_f[] = {
833  "proteus/subsurfaceTransportFunctions.pyx",
834  "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd",
835  "linux/lib/python3.7/site-packages/Cython/Includes/cpython/type.pxd",
836 };
837 /* BufferFormatStructs.proto */
838 #define IS_UNSIGNED(type) (((type) -1) > 0)
839 struct __Pyx_StructField_;
840 #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
841 typedef struct {
842  const char* name;
843  struct __Pyx_StructField_* fields;
844  size_t size;
845  size_t arraysize[8];
846  int ndim;
847  char typegroup;
848  char is_unsigned;
849  int flags;
850 } __Pyx_TypeInfo;
851 typedef struct __Pyx_StructField_ {
852  __Pyx_TypeInfo* type;
853  const char* name;
854  size_t offset;
855 } __Pyx_StructField;
856 typedef struct {
857  __Pyx_StructField* field;
858  size_t parent_offset;
859 } __Pyx_BufFmt_StackElem;
860 typedef struct {
861  __Pyx_StructField root;
862  __Pyx_BufFmt_StackElem* head;
863  size_t fmt_offset;
864  size_t new_count, enc_count;
865  size_t struct_alignment;
866  int is_complex;
867  char enc_type;
868  char new_packmode;
869  char enc_packmode;
870  char is_valid_array;
871 } __Pyx_BufFmt_Context;
872 
873 
874 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":776
875  * # in Cython to enable them only on the right systems.
876  *
877  * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
878  * ctypedef npy_int16 int16_t
879  * ctypedef npy_int32 int32_t
880  */
881 typedef npy_int8 __pyx_t_5numpy_int8_t;
882 
883 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":777
884  *
885  * ctypedef npy_int8 int8_t
886  * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
887  * ctypedef npy_int32 int32_t
888  * ctypedef npy_int64 int64_t
889  */
890 typedef npy_int16 __pyx_t_5numpy_int16_t;
891 
892 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":778
893  * ctypedef npy_int8 int8_t
894  * ctypedef npy_int16 int16_t
895  * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
896  * ctypedef npy_int64 int64_t
897  * #ctypedef npy_int96 int96_t
898  */
899 typedef npy_int32 __pyx_t_5numpy_int32_t;
900 
901 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":779
902  * ctypedef npy_int16 int16_t
903  * ctypedef npy_int32 int32_t
904  * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
905  * #ctypedef npy_int96 int96_t
906  * #ctypedef npy_int128 int128_t
907  */
908 typedef npy_int64 __pyx_t_5numpy_int64_t;
909 
910 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":783
911  * #ctypedef npy_int128 int128_t
912  *
913  * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
914  * ctypedef npy_uint16 uint16_t
915  * ctypedef npy_uint32 uint32_t
916  */
917 typedef npy_uint8 __pyx_t_5numpy_uint8_t;
918 
919 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":784
920  *
921  * ctypedef npy_uint8 uint8_t
922  * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
923  * ctypedef npy_uint32 uint32_t
924  * ctypedef npy_uint64 uint64_t
925  */
926 typedef npy_uint16 __pyx_t_5numpy_uint16_t;
927 
928 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":785
929  * ctypedef npy_uint8 uint8_t
930  * ctypedef npy_uint16 uint16_t
931  * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
932  * ctypedef npy_uint64 uint64_t
933  * #ctypedef npy_uint96 uint96_t
934  */
935 typedef npy_uint32 __pyx_t_5numpy_uint32_t;
936 
937 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":786
938  * ctypedef npy_uint16 uint16_t
939  * ctypedef npy_uint32 uint32_t
940  * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
941  * #ctypedef npy_uint96 uint96_t
942  * #ctypedef npy_uint128 uint128_t
943  */
944 typedef npy_uint64 __pyx_t_5numpy_uint64_t;
945 
946 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":790
947  * #ctypedef npy_uint128 uint128_t
948  *
949  * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
950  * ctypedef npy_float64 float64_t
951  * #ctypedef npy_float80 float80_t
952  */
953 typedef npy_float32 __pyx_t_5numpy_float32_t;
954 
955 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":791
956  *
957  * ctypedef npy_float32 float32_t
958  * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
959  * #ctypedef npy_float80 float80_t
960  * #ctypedef npy_float128 float128_t
961  */
962 typedef npy_float64 __pyx_t_5numpy_float64_t;
963 
964 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":800
965  * # The int types are mapped a bit surprising --
966  * # numpy.int corresponds to 'l' and numpy.long to 'q'
967  * ctypedef npy_long int_t # <<<<<<<<<<<<<<
968  * ctypedef npy_longlong long_t
969  * ctypedef npy_longlong longlong_t
970  */
971 typedef npy_long __pyx_t_5numpy_int_t;
972 
973 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":801
974  * # numpy.int corresponds to 'l' and numpy.long to 'q'
975  * ctypedef npy_long int_t
976  * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
977  * ctypedef npy_longlong longlong_t
978  *
979  */
980 typedef npy_longlong __pyx_t_5numpy_long_t;
981 
982 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":802
983  * ctypedef npy_long int_t
984  * ctypedef npy_longlong long_t
985  * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
986  *
987  * ctypedef npy_ulong uint_t
988  */
989 typedef npy_longlong __pyx_t_5numpy_longlong_t;
990 
991 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":804
992  * ctypedef npy_longlong longlong_t
993  *
994  * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
995  * ctypedef npy_ulonglong ulong_t
996  * ctypedef npy_ulonglong ulonglong_t
997  */
998 typedef npy_ulong __pyx_t_5numpy_uint_t;
999 
1000 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":805
1001  *
1002  * ctypedef npy_ulong uint_t
1003  * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
1004  * ctypedef npy_ulonglong ulonglong_t
1005  *
1006  */
1007 typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
1008 
1009 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":806
1010  * ctypedef npy_ulong uint_t
1011  * ctypedef npy_ulonglong ulong_t
1012  * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
1013  *
1014  * ctypedef npy_intp intp_t
1015  */
1016 typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1017 
1018 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":808
1019  * ctypedef npy_ulonglong ulonglong_t
1020  *
1021  * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
1022  * ctypedef npy_uintp uintp_t
1023  *
1024  */
1025 typedef npy_intp __pyx_t_5numpy_intp_t;
1026 
1027 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":809
1028  *
1029  * ctypedef npy_intp intp_t
1030  * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
1031  *
1032  * ctypedef npy_double float_t
1033  */
1034 typedef npy_uintp __pyx_t_5numpy_uintp_t;
1035 
1036 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":811
1037  * ctypedef npy_uintp uintp_t
1038  *
1039  * ctypedef npy_double float_t # <<<<<<<<<<<<<<
1040  * ctypedef npy_double double_t
1041  * ctypedef npy_longdouble longdouble_t
1042  */
1043 typedef npy_double __pyx_t_5numpy_float_t;
1044 
1045 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":812
1046  *
1047  * ctypedef npy_double float_t
1048  * ctypedef npy_double double_t # <<<<<<<<<<<<<<
1049  * ctypedef npy_longdouble longdouble_t
1050  *
1051  */
1052 typedef npy_double __pyx_t_5numpy_double_t;
1053 
1054 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":813
1055  * ctypedef npy_double float_t
1056  * ctypedef npy_double double_t
1057  * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
1058  *
1059  * ctypedef npy_cfloat cfloat_t
1060  */
1061 typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
1062 
1063 /* "subsurfaceTransportFunctions.pyx":14
1064  * cdef inline double double_min(double a, double b): return a if a <= b else b
1065  *
1066  * ctypedef numpy.double_t DTYPE_t # <<<<<<<<<<<<<<
1067  * #numpy.intc_t not in cython's numpy.pxd
1068  * ctypedef int ITYPE_t
1069  */
1070 typedef __pyx_t_5numpy_double_t __pyx_t_28subsurfaceTransportFunctions_DTYPE_t;
1071 
1072 /* "subsurfaceTransportFunctions.pyx":16
1073  * ctypedef numpy.double_t DTYPE_t
1074  * #numpy.intc_t not in cython's numpy.pxd
1075  * ctypedef int ITYPE_t # <<<<<<<<<<<<<<
1076  *
1077  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global,
1078  */
1079 typedef int __pyx_t_28subsurfaceTransportFunctions_ITYPE_t;
1080 /* Declarations.proto */
1081 #if CYTHON_CCOMPLEX
1082  #ifdef __cplusplus
1083  typedef ::std::complex< float > __pyx_t_float_complex;
1084  #else
1085  typedef float _Complex __pyx_t_float_complex;
1086  #endif
1087 #else
1088  typedef struct { float real, imag; } __pyx_t_float_complex;
1089 #endif
1090 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
1091 
1092 /* Declarations.proto */
1093 #if CYTHON_CCOMPLEX
1094  #ifdef __cplusplus
1095  typedef ::std::complex< double > __pyx_t_double_complex;
1096  #else
1097  typedef double _Complex __pyx_t_double_complex;
1098  #endif
1099 #else
1100  typedef struct { double real, imag; } __pyx_t_double_complex;
1101 #endif
1102 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
1103 
1104 
1105 /*--- Type declarations ---*/
1106 
1107 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":815
1108  * ctypedef npy_longdouble longdouble_t
1109  *
1110  * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
1111  * ctypedef npy_cdouble cdouble_t
1112  * ctypedef npy_clongdouble clongdouble_t
1113  */
1114 typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
1115 
1116 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":816
1117  *
1118  * ctypedef npy_cfloat cfloat_t
1119  * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
1120  * ctypedef npy_clongdouble clongdouble_t
1121  *
1122  */
1123 typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
1124 
1125 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":817
1126  * ctypedef npy_cfloat cfloat_t
1127  * ctypedef npy_cdouble cdouble_t
1128  * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
1129  *
1130  * ctypedef npy_cdouble complex_t
1131  */
1132 typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
1133 
1134 /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":819
1135  * ctypedef npy_clongdouble clongdouble_t
1136  *
1137  * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
1138  *
1139  * cdef inline object PyArray_MultiIterNew1(a):
1140  */
1141 typedef npy_cdouble __pyx_t_5numpy_complex_t;
1142 
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1144 /* Refnanny.proto */
1145 #ifndef CYTHON_REFNANNY
1146  #define CYTHON_REFNANNY 0
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1152  void (*GOTREF)(void*, PyObject*, int);
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1176  #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1177  #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1178  #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
1179  #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
1180  #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
1181  #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
1182  #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
1183 #else
1184  #define __Pyx_RefNannyDeclarations
1185  #define __Pyx_RefNannySetupContext(name, acquire_gil)
1186  #define __Pyx_RefNannyFinishContext()
1187  #define __Pyx_INCREF(r) Py_INCREF(r)
1188  #define __Pyx_DECREF(r) Py_DECREF(r)
1189  #define __Pyx_GOTREF(r)
1190  #define __Pyx_GIVEREF(r)
1191  #define __Pyx_XINCREF(r) Py_XINCREF(r)
1192  #define __Pyx_XDECREF(r) Py_XDECREF(r)
1193  #define __Pyx_XGOTREF(r)
1194  #define __Pyx_XGIVEREF(r)
1195 #endif
1196 #define __Pyx_XDECREF_SET(r, v) do {\
1197  PyObject *tmp = (PyObject *) r;\
1198  r = v; __Pyx_XDECREF(tmp);\
1199  } while (0)
1200 #define __Pyx_DECREF_SET(r, v) do {\
1201  PyObject *tmp = (PyObject *) r;\
1202  r = v; __Pyx_DECREF(tmp);\
1203  } while (0)
1204 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
1205 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
1206 
1207 /* PyObjectGetAttrStr.proto */
1208 #if CYTHON_USE_TYPE_SLOTS
1209 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
1210 #else
1211 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
1212 #endif
1213 
1214 /* GetBuiltinName.proto */
1215 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
1216 
1217 /* RaiseArgTupleInvalid.proto */
1218 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
1219  Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
1220 
1221 /* RaiseDoubleKeywords.proto */
1222 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
1223 
1224 /* ParseKeywords.proto */
1225 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
1226  PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
1227  const char* function_name);
1228 
1229 /* ArgTypeTest.proto */
1230 #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
1231  ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\
1232  __Pyx__ArgTypeTest(obj, type, name, exact))
1233 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact);
1234 
1235 /* IsLittleEndian.proto */
1236 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);
1237 
1238 /* BufferFormatCheck.proto */
1239 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
1240 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
1241  __Pyx_BufFmt_StackElem* stack,
1242  __Pyx_TypeInfo* type);
1243 
1244 /* BufferGetAndValidate.proto */
1245 #define __Pyx_GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack)\
1246  ((obj == Py_None || obj == NULL) ?\
1247  (__Pyx_ZeroBuffer(buf), 0) :\
1248  __Pyx__GetBufferAndValidate(buf, obj, dtype, flags, nd, cast, stack))
1249 static int __Pyx__GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
1250  __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
1251 static void __Pyx_ZeroBuffer(Py_buffer* buf);
1252 static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
1253 static Py_ssize_t __Pyx_minusones[] = { -1, -1, -1, -1, -1, -1, -1, -1 };
1254 static Py_ssize_t __Pyx_zeros[] = { 0, 0, 0, 0, 0, 0, 0, 0 };
1255 
1256 /* BufferIndexError.proto */
1257 static void __Pyx_RaiseBufferIndexError(int axis);
1258 
1259 #define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0)
1260 #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1)
1261 /* PyThreadStateGet.proto */
1262 #if CYTHON_FAST_THREAD_STATE
1263 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
1264 #define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current;
1265 #define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type
1266 #else
1267 #define __Pyx_PyThreadState_declare
1268 #define __Pyx_PyThreadState_assign
1269 #define __Pyx_PyErr_Occurred() PyErr_Occurred()
1270 #endif
1271 
1272 /* PyErrFetchRestore.proto */
1273 #if CYTHON_FAST_THREAD_STATE
1274 #define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
1275 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
1276 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
1277 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
1278 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
1279 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1280 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1281 #if CYTHON_COMPILING_IN_CPYTHON
1282 #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
1283 #else
1284 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1285 #endif
1286 #else
1287 #define __Pyx_PyErr_Clear() PyErr_Clear()
1288 #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
1289 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
1290 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
1291 #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb)
1292 #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb)
1293 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
1294 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
1295 #endif
1296 
1297 /* DictGetItem.proto */
1298 #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
1299 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key);
1300 #define __Pyx_PyObject_Dict_GetItem(obj, name)\
1301  (likely(PyDict_CheckExact(obj)) ?\
1302  __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name))
1303 #else
1304 #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
1305 #define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name)
1306 #endif
1307 
1308 #define __Pyx_BufPtrStrided3d(type, buf, i0, s0, i1, s1, i2, s2) (type)((char*)buf + i0 * s0 + i1 * s1 + i2 * s2)
1309 /* GetItemInt.proto */
1310 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1311  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1312  __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
1313  (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
1314  __Pyx_GetItemInt_Generic(o, to_py_func(i))))
1315 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1316  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1317  __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1318  (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
1319 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
1320  int wraparound, int boundscheck);
1321 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1322  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1323  __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1324  (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
1325 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
1326  int wraparound, int boundscheck);
1327 static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
1328 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
1329  int is_list, int wraparound, int boundscheck);
1330 
1331 /* ObjectGetItem.proto */
1332 #if CYTHON_USE_TYPE_SLOTS
1333 static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key);
1334 #else
1335 #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key)
1336 #endif
1337 
1338 /* PyFloatBinop.proto */
1339 #if !CYTHON_COMPILING_IN_PYPY
1340 static PyObject* __Pyx_PyFloat_AddObjC(PyObject *op1, PyObject *op2, double floatval, int inplace, int zerodivision_check);
1341 #else
1342 #define __Pyx_PyFloat_AddObjC(op1, op2, floatval, inplace, zerodivision_check)\
1343  (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
1344 #endif
1345 
1346 #define __Pyx_BufPtrStrided4d(type, buf, i0, s0, i1, s1, i2, s2, i3, s3) (type)((char*)buf + i0 * s0 + i1 * s1 + i2 * s2 + i3 * s3)
1347 /* PyFunctionFastCall.proto */
1348 #if CYTHON_FAST_PYCALL
1349 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
1350  __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
1351 #if 1 || PY_VERSION_HEX < 0x030600B1
1352 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs);
1353 #else
1354 #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
1355 #endif
1356 #define __Pyx_BUILD_ASSERT_EXPR(cond)\
1357  (sizeof(char [1 - 2*!(cond)]) - 1)
1358 #ifndef Py_MEMBER_SIZE
1359 #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member)
1360 #endif
1361  static size_t __pyx_pyframe_localsplus_offset = 0;
1362  #include "frameobject.h"
1363  #define __Pxy_PyFrame_Initialize_Offsets()\
1364  ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\
1365  (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus)))
1366  #define __Pyx_PyFrame_GetLocalsplus(frame)\
1367  (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset))
1368 #endif
1369 
1370 /* PyCFunctionFastCall.proto */
1371 #if CYTHON_FAST_PYCCALL
1372 static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
1373 #else
1374 #define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
1375 #endif
1376 
1377 /* PyObjectCall.proto */
1378 #if CYTHON_COMPILING_IN_CPYTHON
1379 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
1380 #else
1381 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
1382 #endif
1383 
1384 /* PyDictVersioning.proto */
1385 #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
1386 #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1)
1387 #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag)
1388 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
1389  (version_var) = __PYX_GET_DICT_VERSION(dict);\
1390  (cache_var) = (value);
1391 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
1392  static PY_UINT64_T __pyx_dict_version = 0;\
1393  static PyObject *__pyx_dict_cached_value = NULL;\
1394  if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
1395  (VAR) = __pyx_dict_cached_value;\
1396  } else {\
1397  (VAR) = __pyx_dict_cached_value = (LOOKUP);\
1398  __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
1399  }\
1400 }
1401 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj);
1402 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj);
1403 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version);
1404 #else
1405 #define __PYX_GET_DICT_VERSION(dict) (0)
1406 #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
1407 #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP);
1408 #endif
1409 
1410 /* GetModuleGlobalName.proto */
1411 #if CYTHON_USE_DICT_VERSIONS
1412 #define __Pyx_GetModuleGlobalName(var, name) {\
1413  static PY_UINT64_T __pyx_dict_version = 0;\
1414  static PyObject *__pyx_dict_cached_value = NULL;\
1415  (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
1416  (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
1417  __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1418 }
1419 #define __Pyx_GetModuleGlobalNameUncached(var, name) {\
1420  PY_UINT64_T __pyx_dict_version;\
1421  PyObject *__pyx_dict_cached_value;\
1422  (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
1423 }
1424 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
1425 #else
1426 #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1427 #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name)
1428 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
1429 #endif
1430 
1431 /* ExtTypeTest.proto */
1432 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
1433 
1434 /* PyObjectCall2Args.proto */
1435 static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2);
1436 
1437 /* PyObjectCallMethO.proto */
1438 #if CYTHON_COMPILING_IN_CPYTHON
1439 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
1440 #endif
1441 
1442 /* PyObjectCallOneArg.proto */
1443 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
1444 
1445 /* pyobject_as_double.proto */
1446 static double __Pyx__PyObject_AsDouble(PyObject* obj);
1447 #if CYTHON_COMPILING_IN_PYPY
1448 #define __Pyx_PyObject_AsDouble(obj)\
1449 (likely(PyFloat_CheckExact(obj)) ? PyFloat_AS_DOUBLE(obj) :\
1450  likely(PyInt_CheckExact(obj)) ?\
1451  PyFloat_AsDouble(obj) : __Pyx__PyObject_AsDouble(obj))
1452 #else
1453 #define __Pyx_PyObject_AsDouble(obj)\
1454 ((likely(PyFloat_CheckExact(obj))) ?\
1455  PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
1456 #endif
1457 
1458 /* RaiseException.proto */
1459 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
1460 
1461 /* RaiseTooManyValuesToUnpack.proto */
1462 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
1463 
1464 /* RaiseNeedMoreValuesToUnpack.proto */
1465 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
1466 
1467 /* RaiseNoneIterError.proto */
1468 static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
1469 
1470 /* GetTopmostException.proto */
1471 #if CYTHON_USE_EXC_INFO_STACK
1472 static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
1473 #endif
1474 
1475 /* SaveResetException.proto */
1476 #if CYTHON_FAST_THREAD_STATE
1477 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
1478 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1479 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
1480 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1481 #else
1482 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
1483 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
1484 #endif
1485 
1486 /* PyErrExceptionMatches.proto */
1487 #if CYTHON_FAST_THREAD_STATE
1488 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
1489 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
1490 #else
1491 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
1492 #endif
1493 
1494 /* GetException.proto */
1495 #if CYTHON_FAST_THREAD_STATE
1496 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
1497 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1498 #else
1499 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
1500 #endif
1501 
1502 /* TypeImport.proto */
1503 #ifndef __PYX_HAVE_RT_ImportType_proto
1504 #define __PYX_HAVE_RT_ImportType_proto
1505 enum __Pyx_ImportType_CheckSize {
1506  __Pyx_ImportType_CheckSize_Error = 0,
1507  __Pyx_ImportType_CheckSize_Warn = 1,
1508  __Pyx_ImportType_CheckSize_Ignore = 2
1509 };
1510 static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size);
1511 #endif
1512 
1513 /* Import.proto */
1514 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
1515 
1516 /* CLineInTraceback.proto */
1517 #ifdef CYTHON_CLINE_IN_TRACEBACK
1518 #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
1519 #else
1520 static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
1521 #endif
1522 
1523 /* CodeObjectCache.proto */
1524 typedef struct {
1525  PyCodeObject* code_object;
1526  int code_line;
1527 } __Pyx_CodeObjectCacheEntry;
1528 struct __Pyx_CodeObjectCache {
1529  int count;
1530  int max_count;
1531  __Pyx_CodeObjectCacheEntry* entries;
1532 };
1533 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
1534 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
1535 static PyCodeObject *__pyx_find_code_object(int code_line);
1536 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
1537 
1538 /* AddTraceback.proto */
1539 static void __Pyx_AddTraceback(const char *funcname, int c_line,
1540  int py_line, const char *filename);
1541 
1542 /* BufferStructDeclare.proto */
1543 typedef struct {
1544  Py_ssize_t shape, strides, suboffsets;
1545 } __Pyx_Buf_DimInfo;
1546 typedef struct {
1547  size_t refcount;
1548  Py_buffer pybuffer;
1549 } __Pyx_Buffer;
1550 typedef struct {
1551  __Pyx_Buffer *rcbuffer;
1552  char *data;
1553  __Pyx_Buf_DimInfo diminfo[8];
1554 } __Pyx_LocalBuf_ND;
1555 
1556 #if PY_MAJOR_VERSION < 3
1557  static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
1558  static void __Pyx_ReleaseBuffer(Py_buffer *view);
1559 #else
1560  #define __Pyx_GetBuffer PyObject_GetBuffer
1561  #define __Pyx_ReleaseBuffer PyBuffer_Release
1562 #endif
1563 
1564 
1565 /* CIntToPy.proto */
1566 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
1567 
1568 /* CIntToPy.proto */
1569 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value);
1570 
1571 /* CIntToPy.proto */
1572 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
1573 
1574 /* RealImag.proto */
1575 #if CYTHON_CCOMPLEX
1576  #ifdef __cplusplus
1577  #define __Pyx_CREAL(z) ((z).real())
1578  #define __Pyx_CIMAG(z) ((z).imag())
1579  #else
1580  #define __Pyx_CREAL(z) (__real__(z))
1581  #define __Pyx_CIMAG(z) (__imag__(z))
1582  #endif
1583 #else
1584  #define __Pyx_CREAL(z) ((z).real)
1585  #define __Pyx_CIMAG(z) ((z).imag)
1586 #endif
1587 #if defined(__cplusplus) && CYTHON_CCOMPLEX\
1588  && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
1589  #define __Pyx_SET_CREAL(z,x) ((z).real(x))
1590  #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
1591 #else
1592  #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
1593  #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
1594 #endif
1595 
1596 /* Arithmetic.proto */
1597 #if CYTHON_CCOMPLEX
1598  #define __Pyx_c_eq_float(a, b) ((a)==(b))
1599  #define __Pyx_c_sum_float(a, b) ((a)+(b))
1600  #define __Pyx_c_diff_float(a, b) ((a)-(b))
1601  #define __Pyx_c_prod_float(a, b) ((a)*(b))
1602  #define __Pyx_c_quot_float(a, b) ((a)/(b))
1603  #define __Pyx_c_neg_float(a) (-(a))
1604  #ifdef __cplusplus
1605  #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
1606  #define __Pyx_c_conj_float(z) (::std::conj(z))
1607  #if 1
1608  #define __Pyx_c_abs_float(z) (::std::abs(z))
1609  #define __Pyx_c_pow_float(a, b) (::std::pow(a, b))
1610  #endif
1611  #else
1612  #define __Pyx_c_is_zero_float(z) ((z)==0)
1613  #define __Pyx_c_conj_float(z) (conjf(z))
1614  #if 1
1615  #define __Pyx_c_abs_float(z) (cabsf(z))
1616  #define __Pyx_c_pow_float(a, b) (cpowf(a, b))
1617  #endif
1618  #endif
1619 #else
1620  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
1621  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
1622  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
1623  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
1624  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
1625  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
1626  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
1627  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
1628  #if 1
1629  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
1630  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
1631  #endif
1632 #endif
1633 
1634 /* Arithmetic.proto */
1635 #if CYTHON_CCOMPLEX
1636  #define __Pyx_c_eq_double(a, b) ((a)==(b))
1637  #define __Pyx_c_sum_double(a, b) ((a)+(b))
1638  #define __Pyx_c_diff_double(a, b) ((a)-(b))
1639  #define __Pyx_c_prod_double(a, b) ((a)*(b))
1640  #define __Pyx_c_quot_double(a, b) ((a)/(b))
1641  #define __Pyx_c_neg_double(a) (-(a))
1642  #ifdef __cplusplus
1643  #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
1644  #define __Pyx_c_conj_double(z) (::std::conj(z))
1645  #if 1
1646  #define __Pyx_c_abs_double(z) (::std::abs(z))
1647  #define __Pyx_c_pow_double(a, b) (::std::pow(a, b))
1648  #endif
1649  #else
1650  #define __Pyx_c_is_zero_double(z) ((z)==0)
1651  #define __Pyx_c_conj_double(z) (conj(z))
1652  #if 1
1653  #define __Pyx_c_abs_double(z) (cabs(z))
1654  #define __Pyx_c_pow_double(a, b) (cpow(a, b))
1655  #endif
1656  #endif
1657 #else
1658  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
1659  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
1660  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
1661  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
1662  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
1663  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
1664  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
1665  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
1666  #if 1
1667  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
1668  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
1669  #endif
1670 #endif
1671 
1672 /* CIntToPy.proto */
1673 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value);
1674 
1675 /* CIntFromPy.proto */
1676 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
1677 
1678 /* CIntFromPy.proto */
1679 static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *);
1680 
1681 /* CIntFromPy.proto */
1682 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
1683 
1684 /* FastTypeChecks.proto */
1685 #if CYTHON_COMPILING_IN_CPYTHON
1686 #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
1687 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
1688 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
1689 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
1690 #else
1691 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
1692 #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
1693 #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
1694 #endif
1695 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
1696 
1697 /* CheckBinaryVersion.proto */
1698 static int __Pyx_check_binary_version(void);
1699 
1700 /* InitStrings.proto */
1701 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
1702 
1703 
1704 /* Module declarations from 'cpython.buffer' */
1705 
1706 /* Module declarations from 'libc.string' */
1707 
1708 /* Module declarations from 'libc.stdio' */
1709 
1710 /* Module declarations from '__builtin__' */
1711 
1712 /* Module declarations from 'cpython.type' */
1713 static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
1714 
1715 /* Module declarations from 'cpython' */
1716 
1717 /* Module declarations from 'cpython.object' */
1718 
1719 /* Module declarations from 'cpython.ref' */
1720 
1721 /* Module declarations from 'cpython.mem' */
1722 
1723 /* Module declarations from 'numpy' */
1724 
1725 /* Module declarations from 'numpy' */
1726 static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
1727 static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
1728 static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
1729 static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
1730 static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
1731 static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
1732 
1733 /* Module declarations from 'subsurfaceTransportFunctions' */
1734 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t = { "ITYPE_t", NULL, sizeof(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t), 0 };
1735 static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t), { 0 }, 0, 'R', 0, 0 };
1736 #define __Pyx_MODULE_NAME "subsurfaceTransportFunctions"
1737 extern int __pyx_module_is_main_subsurfaceTransportFunctions;
1738 int __pyx_module_is_main_subsurfaceTransportFunctions = 0;
1739 
1740 /* Implementation of 'subsurfaceTransportFunctions' */
1741 static PyObject *__pyx_builtin_range;
1742 static PyObject *__pyx_builtin_ValueError;
1743 static PyObject *__pyx_builtin_RuntimeError;
1744 static PyObject *__pyx_builtin_ImportError;
1745 static const char __pyx_k_I[] = "I";
1746 static const char __pyx_k_J[] = "J";
1747 static const char __pyx_k_d[] = "d";
1748 static const char __pyx_k_i[] = "i";
1749 static const char __pyx_k_j[] = "j";
1750 static const char __pyx_k_k[] = "k";
1751 static const char __pyx_k_m[] = "m";
1752 static const char __pyx_k_n[] = "n";
1753 static const char __pyx_k_q[] = "q";
1754 static const char __pyx_k_t[] = "t";
1755 static const char __pyx_k_v[] = "v";
1756 static const char __pyx_k_w[] = "w";
1757 static const char __pyx_k_x[] = "x";
1758 static const char __pyx_k_dS[] = "dS";
1759 static const char __pyx_k_dV[] = "dV";
1760 static const char __pyx_k_df[] = "df";
1761 static const char __pyx_k_dm[] = "dm";
1762 static const char __pyx_k_eN[] = "eN";
1763 static const char __pyx_k_ii[] = "ii";
1764 static const char __pyx_k_kb[] = "kb";
1765 static const char __pyx_k_mt[] = "mt";
1766 static const char __pyx_k_nd[] = "nd";
1767 static const char __pyx_k_pi[] = "pi";
1768 static const char __pyx_k_xc[] = "xc";
1769 static const char __pyx_k_yc[] = "yc";
1770 static const char __pyx_k_KWr[] = "KWr";
1771 static const char __pyx_k_KWs[] = "KWs";
1772 static const char __pyx_k_dmt[] = "dmt";
1773 static const char __pyx_k_dot[] = "dot";
1774 static const char __pyx_k_ebN[] = "ebN";
1775 static const char __pyx_k_l2g[] = "l2g";
1776 static const char __pyx_k_nnz[] = "nnz";
1777 static const char __pyx_k_q_m[] = "q_m";
1778 static const char __pyx_k_q_r[] = "q_r";
1779 static const char __pyx_k_q_u[] = "q_u";
1780 static const char __pyx_k_q_x[] = "q_x";
1781 static const char __pyx_k_rho[] = "rho";
1782 static const char __pyx_k_sum[] = "sum";
1783 static const char __pyx_k_u_j[] = "u_j";
1784 static const char __pyx_k_vol[] = "vol";
1785 static const char __pyx_k_a_eN[] = "a_eN";
1786 static const char __pyx_k_a_up[] = "a_up";
1787 static const char __pyx_k_beta[] = "beta";
1788 static const char __pyx_k_ebNE[] = "ebNE";
1789 static const char __pyx_k_f_up[] = "f_up";
1790 static const char __pyx_k_flat[] = "flat";
1791 static const char __pyx_k_flux[] = "flux";
1792 static const char __pyx_k_main[] = "__main__";
1793 static const char __pyx_k_name[] = "__name__";
1794 static const char __pyx_k_one8[] = "one8";
1795 static const char __pyx_k_psiC[] = "psiC";
1796 static const char __pyx_k_q_dm[] = "q_dm";
1797 static const char __pyx_k_q_kr[] = "q_kr";
1798 static const char __pyx_k_q_mt[] = "q_mt";
1799 static const char __pyx_k_rho2[] = "rho2";
1800 static const char __pyx_k_rhom[] = "rhom";
1801 static const char __pyx_k_sBar[] = "sBar";
1802 static const char __pyx_k_test[] = "__test__";
1803 static const char __pyx_k_u_eN[] = "u_eN";
1804 static const char __pyx_k_vBar[] = "vBar";
1805 static const char __pyx_k_a_avg[] = "a_avg";
1806 static const char __pyx_k_alpha[] = "alpha";
1807 static const char __pyx_k_clock[] = "clock";
1808 static const char __pyx_k_denom[] = "denom";
1809 static const char __pyx_k_drhom[] = "drhom";
1810 static const char __pyx_k_kr_eN[] = "kr_eN";
1811 static const char __pyx_k_matID[] = "matID";
1812 static const char __pyx_k_numer[] = "numer";
1813 static const char __pyx_k_numpy[] = "numpy";
1814 static const char __pyx_k_pcBar[] = "pcBar";
1815 static const char __pyx_k_q_dkr[] = "q_dkr";
1816 static const char __pyx_k_q_dmt[] = "q_dmt";
1817 static const char __pyx_k_range[] = "range";
1818 static const char __pyx_k_shape[] = "shape";
1819 static const char __pyx_k_u_dof[] = "u_dof";
1820 static const char __pyx_k_u_l2g[] = "u_l2g";
1821 static const char __pyx_k_vBar2[] = "vBar2";
1822 static const char __pyx_k_vol_e[] = "vol_e";
1823 static const char __pyx_k_zeros[] = "zeros";
1824 static const char __pyx_k_a_neig[] = "a_neig";
1825 static const char __pyx_k_colind[] = "colind";
1826 static const char __pyx_k_dkr_up[] = "dkr_up";
1827 static const char __pyx_k_import[] = "__import__";
1828 static const char __pyx_k_mt_avg[] = "mt_avg";
1829 static const char __pyx_k_nSpace[] = "nSpace";
1830 static const char __pyx_k_phi_eN[] = "phi_eN";
1831 static const char __pyx_k_picard[] = "picard";
1832 static const char __pyx_k_q_alin[] = "q_alin";
1833 static const char __pyx_k_q_detJ[] = "q_detJ";
1834 static const char __pyx_k_q_flin[] = "q_flin";
1835 static const char __pyx_k_q_mass[] = "q_mass";
1836 static const char __pyx_k_q_vals[] = "q_vals";
1837 static const char __pyx_k_rowptr[] = "rowptr";
1838 static const char __pyx_k_thetaR[] = "thetaR";
1839 static const char __pyx_k_thetaS[] = "thetaS";
1840 static const char __pyx_k_thetaW[] = "thetaW";
1841 static const char __pyx_k_u_neig[] = "u_neig";
1842 static const char __pyx_k_volume[] = "volume";
1843 static const char __pyx_k_weight[] = "weight";
1844 static const char __pyx_k_df_dofs[] = "df_dofs";
1845 static const char __pyx_k_eN_left[] = "eN_left";
1846 static const char __pyx_k_gravity[] = "gravity";
1847 static const char __pyx_k_kr_neig[] = "kr_neig";
1848 static const char __pyx_k_nSpace2[] = "nSpace2";
1849 static const char __pyx_k_omega_e[] = "omega_e";
1850 static const char __pyx_k_pcBar_n[] = "pcBar_n";
1851 static const char __pyx_k_q_dmass[] = "q_dmass";
1852 static const char __pyx_k_q_kr_up[] = "q_kr_up";
1853 static const char __pyx_k_thetaSR[] = "thetaSR";
1854 static const char __pyx_k_dmtj_avg[] = "dmtj_avg";
1855 static const char __pyx_k_eN_right[] = "eN_right";
1856 static const char __pyx_k_ebq_vals[] = "ebq_vals";
1857 static const char __pyx_k_integral[] = "integral";
1858 static const char __pyx_k_material[] = "material";
1859 static const char __pyx_k_phi_neig[] = "phi_neig";
1860 static const char __pyx_k_q_grad_u[] = "q_grad_u";
1861 static const char __pyx_k_q_grad_v[] = "q_grad_v";
1862 static const char __pyx_k_q_grad_w[] = "q_grad_w";
1863 static const char __pyx_k_ebN_local[] = "ebN_local";
1864 static const char __pyx_k_pcBar_nM1[] = "pcBar_nM1";
1865 static const char __pyx_k_pcBar_nM2[] = "pcBar_nM2";
1866 static const char __pyx_k_sqrt_sBar[] = "sqrt_sBar";
1867 static const char __pyx_k_transient[] = "transient";
1868 static const char __pyx_k_volFactor[] = "volFactor";
1869 static const char __pyx_k_zVelocity[] = "zVelocity";
1870 static const char __pyx_k_zvelocity[] = "zvelocity";
1871 static const char __pyx_k_DKWr_DpsiC[] = "DKWr_DpsiC";
1872 static const char __pyx_k_ValueError[] = "ValueError";
1873 static const char __pyx_k_matID_neig[] = "matID_neig";
1874 static const char __pyx_k_nAvgWeight[] = "nAvgWeight";
1875 static const char __pyx_k_upwindFlag[] = "upwindFlag";
1876 static const char __pyx_k_DsBar_DpsiC[] = "DsBar_DpsiC";
1877 static const char __pyx_k_DvBar_DpsiC[] = "DvBar_DpsiC";
1878 static const char __pyx_k_ImportError[] = "ImportError";
1879 static const char __pyx_k_eN_neighbor[] = "eN_neighbor";
1880 static const char __pyx_k_RuntimeError[] = "RuntimeError";
1881 static const char __pyx_k_tForReversal[] = "tForReversal";
1882 static const char __pyx_k_DthetaW_DpsiC[] = "DthetaW_DpsiC";
1883 static const char __pyx_k_material_left[] = "material_left";
1884 static const char __pyx_k_weak_residual[] = "weak_residual";
1885 static const char __pyx_k_material_right[] = "material_right";
1886 static const char __pyx_k_ebq_global_vals[] = "ebq_global_vals";
1887 static const char __pyx_k_elementJacobian[] = "elementJacobian";
1888 static const char __pyx_k_elementResidual[] = "elementResidual";
1889 static const char __pyx_k_onePlus_pcBar_n[] = "onePlus_pcBar_n";
1890 static const char __pyx_k_nElements_global[] = "nElements_global";
1891 static const char __pyx_k_nDOF_test_element[] = "nDOF_test_element";
1892 static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
1893 static const char __pyx_k_material_functions[] = "material_functions";
1894 static const char __pyx_k_nDOF_trial_element[] = "nDOF_trial_element";
1895 static const char __pyx_k_updateMass_weakAvg[] = "updateMass_weakAvg";
1896 static const char __pyx_k_calculateNormalFlux[] = "calculateNormalFlux";
1897 static const char __pyx_k_thisElementIsUpwind[] = "thisElementIsUpwind";
1898 static const char __pyx_k_elementBoundaryTypes[] = "elementBoundaryTypes";
1899 static const char __pyx_k_elementMaterialTypes[] = "elementMaterialTypes";
1900 static const char __pyx_k_elementNeighborsArray[] = "elementNeighborsArray";
1901 static const char __pyx_k_elementBoundariesArray[] = "elementBoundariesArray";
1902 static const char __pyx_k_jacobian_weak_residual[] = "jacobian_weak_residual";
1903 static const char __pyx_k_characteristic_velocity[] = "characteristic_velocity";
1904 static const char __pyx_k_elementBarycentersArray[] = "elementBarycentersArray";
1905 static const char __pyx_k_nElementBoundaries_global[] = "nElementBoundaries_global";
1906 static const char __pyx_k_setElementBoundariesArray[] = "setElementBoundariesArray";
1907 static const char __pyx_k_RE_NCP1_getElementJacobian[] = "RE_NCP1_getElementJacobian";
1908 static const char __pyx_k_RE_NCP1_getElementResidual[] = "RE_NCP1_getElementResidual";
1909 static const char __pyx_k_nElementBoundaries_element[] = "nElementBoundaries_element";
1910 static const char __pyx_k_updateMassJacobian_weakAvg[] = "updateMassJacobian_weakAvg";
1911 static const char __pyx_k_vortexElementVelocityEval3[] = "vortexElementVelocityEval3";
1912 static const char __pyx_k_vortexElementVelocityEval4[] = "vortexElementVelocityEval4";
1913 static const char __pyx_k_helicalElementVelocityEval3[] = "helicalElementVelocityEval3";
1914 static const char __pyx_k_helicalElementVelocityEval4[] = "helicalElementVelocityEval4";
1915 static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
1916 static const char __pyx_k_characteristic_velocity_dofs[] = "characteristic_velocity_dofs";
1917 static const char __pyx_k_elementBoundaryElementsArray[] = "elementBoundaryElementsArray";
1918 static const char __pyx_k_elementBoundaryMaterialTypes[] = "elementBoundaryMaterialTypes";
1919 static const char __pyx_k_subsurfaceTransportFunctions[] = "subsurfaceTransportFunctions";
1920 static const char __pyx_k_exteriorElementBoundariesArray[] = "exteriorElementBoundariesArray";
1921 static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
1922 static const char __pyx_k_setExteriorElementBoundaryTypes[] = "setExteriorElementBoundaryTypes";
1923 static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
1924 static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
1925 static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
1926 static const char __pyx_k_RE_NCP1_evaluateElementCoefficie[] = "RE_NCP1_evaluateElementCoefficients_Linear";
1927 static const char __pyx_k_computeSimpleCharacteristicVeloc[] = "computeSimpleCharacteristicVelocityFromElementVelocity";
1928 static const char __pyx_k_evaluateScalarMaterialFunctionOv[] = "evaluateScalarMaterialFunctionOverElements";
1929 static const char __pyx_k_evaluateSparseTensorMaterialFunc[] = "evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage";
1930 static const char __pyx_k_evaluateVectorMaterialFunctionOv[] = "evaluateVectorMaterialFunctionOverElements";
1931 static const char __pyx_k_exteriorElementBoundaryMaterialT[] = "exteriorElementBoundaryMaterialTypes";
1932 static const char __pyx_k_nExteriorElementBoundaries_globa[] = "nExteriorElementBoundaries_global";
1933 static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
1934 static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
1935 static const char __pyx_k_proteus_subsurfaceTransportFunct[] = "proteus/subsurfaceTransportFunctions.pyx";
1936 static const char __pyx_k_rotatingGaussianElementVelocityE[] = "rotatingGaussianElementVelocityEval3";
1937 static const char __pyx_k_setScalarMaterialFunctionOverEle[] = "setScalarMaterialFunctionOverElements";
1938 static const char __pyx_k_setScalarMaterialFunctionOverGlo[] = "setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage";
1939 static const char __pyx_k_setSparseTensorMaterialFunctionO[] = "setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage";
1940 static const char __pyx_k_setVectorMaterialFunctionOverEle[] = "setVectorMaterialFunctionOverElements";
1941 static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
1942 static const char __pyx_k_RE_NCP1_evaluateElementCoefficie_2[] = "RE_NCP1_evaluateElementCoefficients_VGM";
1943 static const char __pyx_k_computeSimpleCharacteristicVeloc_2[] = "computeSimpleCharacteristicVelocityFromVelocityDOFs";
1944 static const char __pyx_k_evaluateScalarMaterialFunctionOv_2[] = "evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage";
1945 static const char __pyx_k_evaluateScalarMaterialFunctionOv_3[] = "evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage";
1946 static const char __pyx_k_evaluateSparseTensorMaterialFunc_2[] = "evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage";
1947 static const char __pyx_k_rotatingGaussianElementVelocityE_2[] = "rotatingGaussianElementVelocityEval4";
1948 static const char __pyx_k_setScalarMaterialFunctionOverEle_2[] = "setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage";
1949 static const char __pyx_k_setSparseTensorMaterialFunctionO_2[] = "setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage";
1950 static PyObject *__pyx_n_s_DKWr_DpsiC;
1951 static PyObject *__pyx_n_s_DsBar_DpsiC;
1952 static PyObject *__pyx_n_s_DthetaW_DpsiC;
1953 static PyObject *__pyx_n_s_DvBar_DpsiC;
1954 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
1955 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
1956 static PyObject *__pyx_n_s_I;
1957 static PyObject *__pyx_n_s_ImportError;
1958 static PyObject *__pyx_n_s_J;
1959 static PyObject *__pyx_n_s_KWr;
1960 static PyObject *__pyx_n_s_KWs;
1961 static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
1962 static PyObject *__pyx_n_s_RE_NCP1_evaluateElementCoefficie;
1963 static PyObject *__pyx_n_s_RE_NCP1_evaluateElementCoefficie_2;
1964 static PyObject *__pyx_n_s_RE_NCP1_getElementJacobian;
1965 static PyObject *__pyx_n_s_RE_NCP1_getElementResidual;
1966 static PyObject *__pyx_n_s_RuntimeError;
1967 static PyObject *__pyx_n_s_ValueError;
1968 static PyObject *__pyx_n_s_a_avg;
1969 static PyObject *__pyx_n_s_a_eN;
1970 static PyObject *__pyx_n_s_a_neig;
1971 static PyObject *__pyx_n_s_a_up;
1972 static PyObject *__pyx_n_s_alpha;
1973 static PyObject *__pyx_n_s_beta;
1974 static PyObject *__pyx_n_s_calculateNormalFlux;
1975 static PyObject *__pyx_n_s_characteristic_velocity;
1976 static PyObject *__pyx_n_s_characteristic_velocity_dofs;
1977 static PyObject *__pyx_n_s_cline_in_traceback;
1978 static PyObject *__pyx_n_s_clock;
1979 static PyObject *__pyx_n_s_colind;
1980 static PyObject *__pyx_n_s_computeSimpleCharacteristicVeloc;
1981 static PyObject *__pyx_n_s_computeSimpleCharacteristicVeloc_2;
1982 static PyObject *__pyx_n_s_d;
1983 static PyObject *__pyx_n_s_dS;
1984 static PyObject *__pyx_n_s_dV;
1985 static PyObject *__pyx_n_s_denom;
1986 static PyObject *__pyx_n_s_df;
1987 static PyObject *__pyx_n_s_df_dofs;
1988 static PyObject *__pyx_n_s_dkr_up;
1989 static PyObject *__pyx_n_s_dm;
1990 static PyObject *__pyx_n_s_dmt;
1991 static PyObject *__pyx_n_s_dmtj_avg;
1992 static PyObject *__pyx_n_s_dot;
1993 static PyObject *__pyx_n_s_drhom;
1994 static PyObject *__pyx_n_s_eN;
1995 static PyObject *__pyx_n_s_eN_left;
1996 static PyObject *__pyx_n_s_eN_neighbor;
1997 static PyObject *__pyx_n_s_eN_right;
1998 static PyObject *__pyx_n_s_ebN;
1999 static PyObject *__pyx_n_s_ebNE;
2000 static PyObject *__pyx_n_s_ebN_local;
2001 static PyObject *__pyx_n_s_ebq_global_vals;
2002 static PyObject *__pyx_n_s_ebq_vals;
2003 static PyObject *__pyx_n_s_elementBarycentersArray;
2004 static PyObject *__pyx_n_s_elementBoundariesArray;
2005 static PyObject *__pyx_n_s_elementBoundaryElementsArray;
2006 static PyObject *__pyx_n_s_elementBoundaryMaterialTypes;
2007 static PyObject *__pyx_n_s_elementBoundaryTypes;
2008 static PyObject *__pyx_n_s_elementJacobian;
2009 static PyObject *__pyx_n_s_elementMaterialTypes;
2010 static PyObject *__pyx_n_s_elementNeighborsArray;
2011 static PyObject *__pyx_n_s_elementResidual;
2012 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv;
2013 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv_2;
2014 static PyObject *__pyx_n_s_evaluateScalarMaterialFunctionOv_3;
2015 static PyObject *__pyx_n_s_evaluateSparseTensorMaterialFunc;
2016 static PyObject *__pyx_n_s_evaluateSparseTensorMaterialFunc_2;
2017 static PyObject *__pyx_n_s_evaluateVectorMaterialFunctionOv;
2018 static PyObject *__pyx_n_s_exteriorElementBoundariesArray;
2019 static PyObject *__pyx_n_s_exteriorElementBoundaryMaterialT;
2020 static PyObject *__pyx_n_s_f_up;
2021 static PyObject *__pyx_n_s_flat;
2022 static PyObject *__pyx_n_s_flux;
2023 static PyObject *__pyx_n_s_gravity;
2024 static PyObject *__pyx_n_s_helicalElementVelocityEval3;
2025 static PyObject *__pyx_n_s_helicalElementVelocityEval4;
2026 static PyObject *__pyx_n_s_i;
2027 static PyObject *__pyx_n_s_ii;
2028 static PyObject *__pyx_n_s_import;
2029 static PyObject *__pyx_n_s_integral;
2030 static PyObject *__pyx_n_s_j;
2031 static PyObject *__pyx_n_s_jacobian_weak_residual;
2032 static PyObject *__pyx_n_s_k;
2033 static PyObject *__pyx_n_s_kb;
2034 static PyObject *__pyx_n_s_kr_eN;
2035 static PyObject *__pyx_n_s_kr_neig;
2036 static PyObject *__pyx_n_s_l2g;
2037 static PyObject *__pyx_n_s_m;
2038 static PyObject *__pyx_n_s_main;
2039 static PyObject *__pyx_n_s_matID;
2040 static PyObject *__pyx_n_s_matID_neig;
2041 static PyObject *__pyx_n_s_material;
2042 static PyObject *__pyx_n_s_material_functions;
2043 static PyObject *__pyx_n_s_material_left;
2044 static PyObject *__pyx_n_s_material_right;
2045 static PyObject *__pyx_n_s_mt;
2046 static PyObject *__pyx_n_s_mt_avg;
2047 static PyObject *__pyx_n_s_n;
2048 static PyObject *__pyx_n_s_nAvgWeight;
2049 static PyObject *__pyx_n_s_nDOF_test_element;
2050 static PyObject *__pyx_n_s_nDOF_trial_element;
2051 static PyObject *__pyx_n_s_nElementBoundaries_element;
2052 static PyObject *__pyx_n_s_nElementBoundaries_global;
2053 static PyObject *__pyx_n_s_nElements_global;
2054 static PyObject *__pyx_n_s_nExteriorElementBoundaries_globa;
2055 static PyObject *__pyx_n_s_nSpace;
2056 static PyObject *__pyx_n_s_nSpace2;
2057 static PyObject *__pyx_n_s_name;
2058 static PyObject *__pyx_n_s_nd;
2059 static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
2060 static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
2061 static PyObject *__pyx_n_s_nnz;
2062 static PyObject *__pyx_n_s_numer;
2063 static PyObject *__pyx_n_s_numpy;
2064 static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to;
2065 static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor;
2066 static PyObject *__pyx_n_s_omega_e;
2067 static PyObject *__pyx_n_s_one8;
2068 static PyObject *__pyx_n_s_onePlus_pcBar_n;
2069 static PyObject *__pyx_n_s_pcBar;
2070 static PyObject *__pyx_n_s_pcBar_n;
2071 static PyObject *__pyx_n_s_pcBar_nM1;
2072 static PyObject *__pyx_n_s_pcBar_nM2;
2073 static PyObject *__pyx_n_s_phi_eN;
2074 static PyObject *__pyx_n_s_phi_neig;
2075 static PyObject *__pyx_n_s_pi;
2076 static PyObject *__pyx_n_s_picard;
2077 static PyObject *__pyx_kp_s_proteus_subsurfaceTransportFunct;
2078 static PyObject *__pyx_n_s_psiC;
2079 static PyObject *__pyx_n_s_q;
2080 static PyObject *__pyx_n_s_q_alin;
2081 static PyObject *__pyx_n_s_q_detJ;
2082 static PyObject *__pyx_n_s_q_dkr;
2083 static PyObject *__pyx_n_s_q_dm;
2084 static PyObject *__pyx_n_s_q_dmass;
2085 static PyObject *__pyx_n_s_q_dmt;
2086 static PyObject *__pyx_n_s_q_flin;
2087 static PyObject *__pyx_n_s_q_grad_u;
2088 static PyObject *__pyx_n_s_q_grad_v;
2089 static PyObject *__pyx_n_s_q_grad_w;
2090 static PyObject *__pyx_n_s_q_kr;
2091 static PyObject *__pyx_n_s_q_kr_up;
2092 static PyObject *__pyx_n_s_q_m;
2093 static PyObject *__pyx_n_s_q_mass;
2094 static PyObject *__pyx_n_s_q_mt;
2095 static PyObject *__pyx_n_s_q_r;
2096 static PyObject *__pyx_n_s_q_u;
2097 static PyObject *__pyx_n_s_q_vals;
2098 static PyObject *__pyx_n_s_q_x;
2099 static PyObject *__pyx_n_s_range;
2100 static PyObject *__pyx_n_s_rho;
2101 static PyObject *__pyx_n_s_rho2;
2102 static PyObject *__pyx_n_s_rhom;
2103 static PyObject *__pyx_n_s_rotatingGaussianElementVelocityE;
2104 static PyObject *__pyx_n_s_rotatingGaussianElementVelocityE_2;
2105 static PyObject *__pyx_n_s_rowptr;
2106 static PyObject *__pyx_n_s_sBar;
2107 static PyObject *__pyx_n_s_setElementBoundariesArray;
2108 static PyObject *__pyx_n_s_setExteriorElementBoundaryTypes;
2109 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverEle;
2110 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverEle_2;
2111 static PyObject *__pyx_n_s_setScalarMaterialFunctionOverGlo;
2112 static PyObject *__pyx_n_s_setSparseTensorMaterialFunctionO;
2113 static PyObject *__pyx_n_s_setSparseTensorMaterialFunctionO_2;
2114 static PyObject *__pyx_n_s_setVectorMaterialFunctionOverEle;
2115 static PyObject *__pyx_n_s_shape;
2116 static PyObject *__pyx_n_s_sqrt_sBar;
2117 static PyObject *__pyx_n_s_subsurfaceTransportFunctions;
2118 static PyObject *__pyx_n_s_sum;
2119 static PyObject *__pyx_n_s_t;
2120 static PyObject *__pyx_n_s_tForReversal;
2121 static PyObject *__pyx_n_s_test;
2122 static PyObject *__pyx_n_s_thetaR;
2123 static PyObject *__pyx_n_s_thetaS;
2124 static PyObject *__pyx_n_s_thetaSR;
2125 static PyObject *__pyx_n_s_thetaW;
2126 static PyObject *__pyx_n_s_thisElementIsUpwind;
2127 static PyObject *__pyx_n_s_transient;
2128 static PyObject *__pyx_n_s_u_dof;
2129 static PyObject *__pyx_n_s_u_eN;
2130 static PyObject *__pyx_n_s_u_j;
2131 static PyObject *__pyx_n_s_u_l2g;
2132 static PyObject *__pyx_n_s_u_neig;
2133 static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
2134 static PyObject *__pyx_n_s_updateMassJacobian_weakAvg;
2135 static PyObject *__pyx_n_s_updateMass_weakAvg;
2136 static PyObject *__pyx_n_s_upwindFlag;
2137 static PyObject *__pyx_n_s_v;
2138 static PyObject *__pyx_n_s_vBar;
2139 static PyObject *__pyx_n_s_vBar2;
2140 static PyObject *__pyx_n_s_vol;
2141 static PyObject *__pyx_n_s_volFactor;
2142 static PyObject *__pyx_n_s_vol_e;
2143 static PyObject *__pyx_n_s_volume;
2144 static PyObject *__pyx_n_s_vortexElementVelocityEval3;
2145 static PyObject *__pyx_n_s_vortexElementVelocityEval4;
2146 static PyObject *__pyx_n_s_w;
2147 static PyObject *__pyx_n_s_weak_residual;
2148 static PyObject *__pyx_n_s_weight;
2149 static PyObject *__pyx_n_s_x;
2150 static PyObject *__pyx_n_s_xc;
2151 static PyObject *__pyx_n_s_yc;
2152 static PyObject *__pyx_n_s_zVelocity;
2153 static PyObject *__pyx_n_s_zeros;
2154 static PyObject *__pyx_n_s_zvelocity;
2155 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_setExteriorElementBoundaryTypes(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_exteriorElementBoundaryMaterialTypes); /* proto */
2156 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_2setElementBoundariesArray(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nElementBoundaries_global, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_elementBoundaryMaterialTypes); /* proto */
2157 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_4setScalarMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
2158 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_6setVectorMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
2159 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_8setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
2160 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_10setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
2161 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_12setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
2162 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_14setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
2163 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_16evaluateScalarMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
2164 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_18evaluateVectorMaterialFunctionOverElements(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_q_vals, PyObject *__pyx_v_material_functions); /* proto */
2165 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_20evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
2166 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_22evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, double __pyx_v_t, PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_vals, PyObject *__pyx_v_material_functions); /* proto */
2167 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_24evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
2168 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_26evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nd, double __pyx_v_t, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryTypes, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_ebq_global_vals, PyObject *__pyx_v_material_functions); /* proto */
2169 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_28RE_NCP1_evaluateElementCoefficients_Linear(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_rho, PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, PyArrayObject *__pyx_v_KWs, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, PyArrayObject *__pyx_v_elementNeighborsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin); /* proto */
2170 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_30RE_NCP1_evaluateElementCoefficients_VGM(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_rho, double __pyx_v_beta, PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_alpha, PyArrayObject *__pyx_v_n, PyArrayObject *__pyx_v_thetaR, PyArrayObject *__pyx_v_thetaSR, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, PyArrayObject *__pyx_v_elementNeighborsArray, PyArrayObject *__pyx_v_elementBarycentersArray, PyArrayObject *__pyx_v_elementMaterialTypes, int __pyx_v_nDOF_trial_element, PyArrayObject *__pyx_v_u_l2g, PyArrayObject *__pyx_v_u_dof, CYTHON_UNUSED PyArrayObject *__pyx_v_q_x, PyArrayObject *__pyx_v_q_u, PyArrayObject *__pyx_v_q_mass, PyArrayObject *__pyx_v_q_dmass, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, PyArrayObject *__pyx_v_q_dkr, PyArrayObject *__pyx_v_q_kr_up); /* proto */
2171 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_32RE_NCP1_getElementResidual(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray, int __pyx_v_nDOF_test_element, PyArrayObject *__pyx_v_q_u, PyArrayObject *__pyx_v_q_grad_u, PyArrayObject *__pyx_v_q_grad_w, PyArrayObject *__pyx_v_q_detJ, PyArrayObject *__pyx_v_q_m, PyArrayObject *__pyx_v_q_mt, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, PyArrayObject *__pyx_v_q_kr_up, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin, PyArrayObject *__pyx_v_elementResidual); /* proto */
2172 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyArrayObject *__pyx_v_gravity, PyArrayObject *__pyx_v_rowptr, PyArrayObject *__pyx_v_colind, int __pyx_v_nSpace, int __pyx_v_nElements_global, int __pyx_v_nElementBoundaries_element, CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray, CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray, int __pyx_v_nDOF_test_element, int __pyx_v_nDOF_trial_element, PyArrayObject *__pyx_v_q_u, CYTHON_UNUSED PyArrayObject *__pyx_v_q_grad_u, PyArrayObject *__pyx_v_q_grad_w, PyArrayObject *__pyx_v_q_grad_v, PyArrayObject *__pyx_v_q_detJ, PyArrayObject *__pyx_v_q_m, CYTHON_UNUSED PyArrayObject *__pyx_v_q_dm, PyArrayObject *__pyx_v_q_mt, PyArrayObject *__pyx_v_q_dmt, PyArrayObject *__pyx_v_q_r, PyArrayObject *__pyx_v_q_kr, CYTHON_UNUSED PyArrayObject *__pyx_v_q_dkr, PyArrayObject *__pyx_v_q_kr_up, PyArrayObject *__pyx_v_q_flin, PyArrayObject *__pyx_v_q_alin, PyArrayObject *__pyx_v_elementJacobian); /* proto */
2173 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_36updateMass_weakAvg(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_mt, PyArrayObject *__pyx_v_w, PyArrayObject *__pyx_v_dV, PyArrayObject *__pyx_v_weak_residual); /* proto */
2174 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_38updateMassJacobian_weakAvg(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_dmt, PyArrayObject *__pyx_v_w, PyArrayObject *__pyx_v_v, PyArrayObject *__pyx_v_dV, PyArrayObject *__pyx_v_jacobian_weak_residual); /* proto */
2175 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_40calculateNormalFlux(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_v, PyArrayObject *__pyx_v_n, PyArrayObject *__pyx_v_dS, PyArrayObject *__pyx_v_flux); /* proto */
2176 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_42computeSimpleCharacteristicVelocityFromElementVelocity(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_df, PyArrayObject *__pyx_v_characteristic_velocity, PyArrayObject *__pyx_v_dm, PyArrayObject *__pyx_v_dV); /* proto */
2177 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_44computeSimpleCharacteristicVelocityFromVelocityDOFs(CYTHON_UNUSED PyObject *__pyx_self, PyArrayObject *__pyx_v_df_dofs, PyArrayObject *__pyx_v_characteristic_velocity_dofs, PyArrayObject *__pyx_v_l2g, PyArrayObject *__pyx_v_dm, PyArrayObject *__pyx_v_dV); /* proto */
2178 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_46rotatingGaussianElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v, double __pyx_v_zvelocity); /* proto */
2179 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_48rotatingGaussianElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v, double __pyx_v_zvelocity); /* proto */
2180 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_50helicalElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_zVelocity, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
2181 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_52helicalElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_transient, double __pyx_v_t, double __pyx_v_tForReversal, double __pyx_v_clock, double __pyx_v_zVelocity, double __pyx_v_xc, double __pyx_v_yc, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
2182 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_54vortexElementVelocityEval3(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
2183 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_56vortexElementVelocityEval4(CYTHON_UNUSED PyObject *__pyx_self, double __pyx_v_t, PyArrayObject *__pyx_v_x, PyArrayObject *__pyx_v_v); /* proto */
2184 static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
2185 static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
2186 static PyObject *__pyx_float_0_0;
2187 static PyObject *__pyx_float_0_5;
2188 static PyObject *__pyx_float_2_0;
2189 static PyObject *__pyx_float_1_0eneg_20;
2190 static PyObject *__pyx_slice_;
2191 static PyObject *__pyx_tuple__2;
2192 static PyObject *__pyx_tuple__3;
2193 static PyObject *__pyx_tuple__4;
2194 static PyObject *__pyx_tuple__5;
2195 static PyObject *__pyx_tuple__6;
2196 static PyObject *__pyx_tuple__7;
2197 static PyObject *__pyx_tuple__8;
2198 static PyObject *__pyx_tuple__9;
2199 static PyObject *__pyx_tuple__11;
2200 static PyObject *__pyx_tuple__13;
2201 static PyObject *__pyx_tuple__15;
2202 static PyObject *__pyx_tuple__17;
2203 static PyObject *__pyx_tuple__19;
2204 static PyObject *__pyx_tuple__21;
2205 static PyObject *__pyx_tuple__23;
2206 static PyObject *__pyx_tuple__25;
2207 static PyObject *__pyx_tuple__27;
2208 static PyObject *__pyx_tuple__29;
2209 static PyObject *__pyx_tuple__31;
2210 static PyObject *__pyx_tuple__33;
2211 static PyObject *__pyx_tuple__35;
2212 static PyObject *__pyx_tuple__37;
2213 static PyObject *__pyx_tuple__39;
2214 static PyObject *__pyx_tuple__41;
2215 static PyObject *__pyx_tuple__43;
2216 static PyObject *__pyx_tuple__45;
2217 static PyObject *__pyx_tuple__47;
2218 static PyObject *__pyx_tuple__49;
2219 static PyObject *__pyx_tuple__51;
2220 static PyObject *__pyx_tuple__53;
2221 static PyObject *__pyx_tuple__55;
2222 static PyObject *__pyx_tuple__57;
2223 static PyObject *__pyx_tuple__59;
2224 static PyObject *__pyx_tuple__61;
2225 static PyObject *__pyx_tuple__63;
2226 static PyObject *__pyx_tuple__65;
2227 static PyObject *__pyx_codeobj__10;
2228 static PyObject *__pyx_codeobj__12;
2229 static PyObject *__pyx_codeobj__14;
2230 static PyObject *__pyx_codeobj__16;
2231 static PyObject *__pyx_codeobj__18;
2232 static PyObject *__pyx_codeobj__20;
2233 static PyObject *__pyx_codeobj__22;
2234 static PyObject *__pyx_codeobj__24;
2235 static PyObject *__pyx_codeobj__26;
2236 static PyObject *__pyx_codeobj__28;
2237 static PyObject *__pyx_codeobj__30;
2238 static PyObject *__pyx_codeobj__32;
2239 static PyObject *__pyx_codeobj__34;
2240 static PyObject *__pyx_codeobj__36;
2241 static PyObject *__pyx_codeobj__38;
2242 static PyObject *__pyx_codeobj__40;
2243 static PyObject *__pyx_codeobj__42;
2244 static PyObject *__pyx_codeobj__44;
2245 static PyObject *__pyx_codeobj__46;
2246 static PyObject *__pyx_codeobj__48;
2247 static PyObject *__pyx_codeobj__50;
2248 static PyObject *__pyx_codeobj__52;
2249 static PyObject *__pyx_codeobj__54;
2250 static PyObject *__pyx_codeobj__56;
2251 static PyObject *__pyx_codeobj__58;
2252 static PyObject *__pyx_codeobj__60;
2253 static PyObject *__pyx_codeobj__62;
2254 static PyObject *__pyx_codeobj__64;
2255 static PyObject *__pyx_codeobj__66;
2256 /* Late includes */
2257 
2258 /* "subsurfaceTransportFunctions.pyx":11
2259  * double sin(double x)
2260  * double M_PI
2261  * cdef inline double double_max(double a, double b): return a if a >= b else b # <<<<<<<<<<<<<<
2262  * cdef inline double double_min(double a, double b): return a if a <= b else b
2263  *
2264  */
2265 
2266 static CYTHON_INLINE double __pyx_f_28subsurfaceTransportFunctions_double_max(double __pyx_v_a, double __pyx_v_b) {
2267  double __pyx_r;
2268  __Pyx_RefNannyDeclarations
2269  double __pyx_t_1;
2270  __Pyx_RefNannySetupContext("double_max", 0);
2271  if (((__pyx_v_a >= __pyx_v_b) != 0)) {
2272  __pyx_t_1 = __pyx_v_a;
2273  } else {
2274  __pyx_t_1 = __pyx_v_b;
2275  }
2276  __pyx_r = __pyx_t_1;
2277  goto __pyx_L0;
2278 
2279  /* function exit code */
2280  __pyx_L0:;
2281  __Pyx_RefNannyFinishContext();
2282  return __pyx_r;
2283 }
2284 
2285 /* "subsurfaceTransportFunctions.pyx":12
2286  * double M_PI
2287  * cdef inline double double_max(double a, double b): return a if a >= b else b
2288  * cdef inline double double_min(double a, double b): return a if a <= b else b # <<<<<<<<<<<<<<
2289  *
2290  * ctypedef numpy.double_t DTYPE_t
2291  */
2292 
2293 static CYTHON_INLINE double __pyx_f_28subsurfaceTransportFunctions_double_min(double __pyx_v_a, double __pyx_v_b) {
2294  double __pyx_r;
2295  __Pyx_RefNannyDeclarations
2296  double __pyx_t_1;
2297  __Pyx_RefNannySetupContext("double_min", 0);
2298  if (((__pyx_v_a <= __pyx_v_b) != 0)) {
2299  __pyx_t_1 = __pyx_v_a;
2300  } else {
2301  __pyx_t_1 = __pyx_v_b;
2302  }
2303  __pyx_r = __pyx_t_1;
2304  goto __pyx_L0;
2305 
2306  /* function exit code */
2307  __pyx_L0:;
2308  __Pyx_RefNannyFinishContext();
2309  return __pyx_r;
2310 }
2311 
2312 /* "subsurfaceTransportFunctions.pyx":18
2313  * ctypedef int ITYPE_t
2314  *
2315  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
2316  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
2317  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
2318  */
2319 
2320 /* Python wrapper */
2321 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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2326  PyArrayObject *__pyx_v_elementBoundaryElementsArray = 0;
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2334  PyObject* values[5] = {0,0,0,0,0};
2335  if (unlikely(__pyx_kwds)) {
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2358  case 1:
2359  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_exteriorElementBoundariesArray)) != 0)) kw_args--;
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2485  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundaryMaterialTypes):
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2497  * cdef int ebNE,ebN,eN
2498  * for ebNE in range(nExteriorElementBoundaries_global):
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2500  * eN = elementBoundaryElementsArray[ebN,0]
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2516  * for ebNE in range(nExteriorElementBoundaries_global):
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2540  * ebN = exteriorElementBoundariesArray[ebNE]
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2570  * ctypedef int ITYPE_t
2571  *
2572  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
2573  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
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2604 /* "subsurfaceTransportFunctions.pyx":29
2605  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
2606  *
2607  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
2608  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
2609  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
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2611 
2612 /* Python wrapper */
2613 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_3setElementBoundariesArray(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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2615 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_3setElementBoundariesArray(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
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2618  PyArrayObject *__pyx_v_elementMaterialTypes = 0;
2619  PyArrayObject *__pyx_v_elementBoundaryMaterialTypes = 0;
2620  PyObject *__pyx_r = 0;
2621  __Pyx_RefNannyDeclarations
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2625  PyObject* values[4] = {0,0,0,0};
2626  if (unlikely(__pyx_kwds)) {
2627  Py_ssize_t kw_args;
2628  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
2629  switch (pos_args) {
2630  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
2631  CYTHON_FALLTHROUGH;
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2633  CYTHON_FALLTHROUGH;
2634  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2635  CYTHON_FALLTHROUGH;
2636  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2637  CYTHON_FALLTHROUGH;
2638  case 0: break;
2639  default: goto __pyx_L5_argtuple_error;
2640  }
2641  kw_args = PyDict_Size(__pyx_kwds);
2642  switch (pos_args) {
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2644  if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nElementBoundaries_global)) != 0)) kw_args--;
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2648  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementBoundaryElementsArray)) != 0)) kw_args--;
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2668  } else if (PyTuple_GET_SIZE(__pyx_args) != 4) {
2669  goto __pyx_L5_argtuple_error;
2670  } else {
2671  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2672  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2673  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
2674  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
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2676  __pyx_v_nElementBoundaries_global = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_nElementBoundaries_global == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 29, __pyx_L3_error)
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2681  goto __pyx_L4_argument_unpacking_done;
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2683  __Pyx_RaiseArgtupleInvalid("setElementBoundariesArray", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 29, __pyx_L3_error)
2684  __pyx_L3_error:;
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2694  /* function exit code */
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2702 
2703 static PyObject *__pyx_pf_28subsurfaceTransportFunctions_2setElementBoundariesArray(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_nElementBoundaries_global, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementMaterialTypes, PyArrayObject *__pyx_v_elementBoundaryMaterialTypes) {
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2710  __Pyx_Buffer __pyx_pybuffer_elementBoundaryMaterialTypes;
2711  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementMaterialTypes;
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2714  __Pyx_RefNannyDeclarations
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2719  Py_ssize_t __pyx_t_5;
2720  int __pyx_t_6;
2721  Py_ssize_t __pyx_t_7;
2722  Py_ssize_t __pyx_t_8;
2723  Py_ssize_t __pyx_t_9;
2724  Py_ssize_t __pyx_t_10;
2725  Py_ssize_t __pyx_t_11;
2726  Py_ssize_t __pyx_t_12;
2727  Py_ssize_t __pyx_t_13;
2728  Py_ssize_t __pyx_t_14;
2729  int __pyx_t_15;
2730  Py_ssize_t __pyx_t_16;
2731  Py_ssize_t __pyx_t_17;
2732  Py_ssize_t __pyx_t_18;
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2736  __pyx_pybuffernd_elementBoundaryElementsArray.data = NULL;
2737  __pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer = &__pyx_pybuffer_elementBoundaryElementsArray;
2738  __pyx_pybuffer_elementMaterialTypes.pybuffer.buf = NULL;
2739  __pyx_pybuffer_elementMaterialTypes.refcount = 0;
2740  __pyx_pybuffernd_elementMaterialTypes.data = NULL;
2741  __pyx_pybuffernd_elementMaterialTypes.rcbuffer = &__pyx_pybuffer_elementMaterialTypes;
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2745  __pyx_pybuffernd_elementBoundaryMaterialTypes.rcbuffer = &__pyx_pybuffer_elementBoundaryMaterialTypes;
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2747  __Pyx_BufFmt_StackElem __pyx_stack[1];
2748  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_elementBoundaryElementsArray.rcbuffer->pybuffer, (PyObject*)__pyx_v_elementBoundaryElementsArray, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 29, __pyx_L1_error)
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2757  __Pyx_BufFmt_StackElem __pyx_stack[1];
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2761 
2762  /* "subsurfaceTransportFunctions.pyx":34
2763  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryMaterialTypes):
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2765  * for ebN in range(nElementBoundaries_global): # <<<<<<<<<<<<<<
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2775  * cdef int ebN,eN_left,eN_right
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2783  __pyx_t_6 = -1;
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2797 
2798  /* "subsurfaceTransportFunctions.pyx":36
2799  * for ebN in range(nElementBoundaries_global):
2800  * eN_left = elementBoundaryElementsArray[ebN,0]
2801  * eN_right= elementBoundaryElementsArray[ebN,1] # <<<<<<<<<<<<<<
2802  * elementBoundaryMaterialTypes[ebN,0] = elementMaterialTypes[eN_left]
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2821 
2822  /* "subsurfaceTransportFunctions.pyx":37
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2889 
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2891  * elementBoundaryMaterialTypes[ebN,0] = elementMaterialTypes[eN_left]
2892  * elementBoundaryMaterialTypes[ebN,1] = elementMaterialTypes[eN_left]
2893  * if eN_right >= 0: # <<<<<<<<<<<<<<
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2901  * elementBoundaryMaterialTypes[ebN,1] = elementMaterialTypes[eN_left]
2902  * if eN_right >= 0:
2903  * elementBoundaryMaterialTypes[ebN,1] = elementMaterialTypes[eN_right] # <<<<<<<<<<<<<<
2904  *
2905  * ###
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2908  __pyx_t_6 = -1;
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2981  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
2982  * dict material_functions):
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3474  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
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3502  CYTHON_FALLTHROUGH;
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3504  CYTHON_FALLTHROUGH;
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3590  npy_intp __pyx_t_5;
3591  int __pyx_t_6;
3592  Py_ssize_t __pyx_t_7;
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3594  int __pyx_t_9;
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3711  * ebN = elementBoundariesArray[eN,ebN_local]
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3714  * for k in range(ebq_vals.shape[2]):
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3822  *
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3825  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
3826  * numpy.ndarray[DTYPE_t,ndim=3] ebq_vals,
3827  */
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3858  * material_functions[material_right])
3859  *
3860  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
3861  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
3862  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
3863  */
3864 
3865 /* Python wrapper */
3866 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_11setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
3867 static char __pyx_doc_28subsurfaceTransportFunctions_10setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage[] = "\n loop over quadrature array and evaluate function \ten f_{mn} = f^L_{j,mn} f^R_{k,mn}/(f^L_{j,mn}+f^R_{k,mn})\n assuming element on left is material j and element on right is material k\n\n likely little improvement right now without correct typing of material_functions\n \n ";
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4399  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
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4401  * def setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
4402  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
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4736  *
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4739  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
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4745 static char __pyx_doc_28subsurfaceTransportFunctions_14setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage[] = "\n loop over quadrature array and evaluate function \ten f_{mn} = f^L_{j,mn}f^R_{k,mn}/(f^L_{j,mn}+f^R_{k,mn})\n assuming element on left is material j and element on right is material k\n\n likely little improvement right now without correct typing of material_functions\n \n ";
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4920  * cdef double numer,denom
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4935  * material_right= elementBoundaryTypes[ebN,1]
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5941  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
5942  */
5943 
5944 /* Python wrapper */
5945 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_21evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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5952  PyArrayObject *__pyx_v_x = 0;
5953  PyArrayObject *__pyx_v_ebq_vals = 0;
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5970  CYTHON_FALLTHROUGH;
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5972  CYTHON_FALLTHROUGH;
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6144  *
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6146  * for ebN_local in range(x.shape[1]):
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6215  * ebN = elementBoundariesArray[eN,ebN_local]
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6510  * material_functions[material_right](x[eN,ebN_local,k],t))
6511  *
6512  * def evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
6513  * double t,
6514  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
6515  */
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8685  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
8686  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
8687  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
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9374  __pyx_t_19 = -1;
9375  if (__pyx_t_20 < 0) {
9376  __pyx_t_20 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9377  if (unlikely(__pyx_t_20 < 0)) __pyx_t_19 = 0;
9378  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_19 = 0;
9379  if (unlikely(__pyx_t_19 != -1)) {
9380  __Pyx_RaiseBufferIndexError(__pyx_t_19);
9381  __PYX_ERR(0, 339, __pyx_L1_error)
9382  }
9383  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_eN.rcbuffer->pybuffer.buf, __pyx_t_20, __pyx_pybuffernd_a_eN.diminfo[0].strides) = (__pyx_v_rho * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_KWs.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_KWs.diminfo[0].strides, __pyx_t_18, __pyx_pybuffernd_KWs.diminfo[1].strides)));
9384  }
9385 
9386  /* "subsurfaceTransportFunctions.pyx":340
9387  * for ii in range(nnz):
9388  * a_eN[ii] = rho*KWs[matID,ii]
9389  * for ebN in range(nElementBoundaries_element): # <<<<<<<<<<<<<<
9390  * eN_neighbor = elementNeighborsArray[eN,ebN]
9391  * for ii in range(nnz):
9392  */
9393  __pyx_t_14 = __pyx_v_nElementBoundaries_element;
9394  __pyx_t_15 = __pyx_t_14;
9395  for (__pyx_t_16 = 0; __pyx_t_16 < __pyx_t_15; __pyx_t_16+=1) {
9396  __pyx_v_ebN = __pyx_t_16;
9397 
9398  /* "subsurfaceTransportFunctions.pyx":341
9399  * a_eN[ii] = rho*KWs[matID,ii]
9400  * for ebN in range(nElementBoundaries_element):
9401  * eN_neighbor = elementNeighborsArray[eN,ebN] # <<<<<<<<<<<<<<
9402  * for ii in range(nnz):
9403  * a_neig[ii] = a_eN[ii]
9404  */
9405  __pyx_t_21 = __pyx_v_eN;
9406  __pyx_t_22 = __pyx_v_ebN;
9407  __pyx_t_19 = -1;
9408  if (__pyx_t_21 < 0) {
9409  __pyx_t_21 += __pyx_pybuffernd_elementNeighborsArray.diminfo[0].shape;
9410  if (unlikely(__pyx_t_21 < 0)) __pyx_t_19 = 0;
9411  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_elementNeighborsArray.diminfo[0].shape)) __pyx_t_19 = 0;
9412  if (__pyx_t_22 < 0) {
9413  __pyx_t_22 += __pyx_pybuffernd_elementNeighborsArray.diminfo[1].shape;
9414  if (unlikely(__pyx_t_22 < 0)) __pyx_t_19 = 1;
9415  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_elementNeighborsArray.diminfo[1].shape)) __pyx_t_19 = 1;
9416  if (unlikely(__pyx_t_19 != -1)) {
9417  __Pyx_RaiseBufferIndexError(__pyx_t_19);
9418  __PYX_ERR(0, 341, __pyx_L1_error)
9419  }
9420  __pyx_v_eN_neighbor = (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_elementNeighborsArray.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_elementNeighborsArray.diminfo[0].strides, __pyx_t_22, __pyx_pybuffernd_elementNeighborsArray.diminfo[1].strides));
9421 
9422  /* "subsurfaceTransportFunctions.pyx":342
9423  * for ebN in range(nElementBoundaries_element):
9424  * eN_neighbor = elementNeighborsArray[eN,ebN]
9425  * for ii in range(nnz): # <<<<<<<<<<<<<<
9426  * a_neig[ii] = a_eN[ii]
9427  * if eN_neighbor >= 0:
9428  */
9429  __pyx_t_19 = __pyx_v_nnz;
9430  __pyx_t_23 = __pyx_t_19;
9431  for (__pyx_t_24 = 0; __pyx_t_24 < __pyx_t_23; __pyx_t_24+=1) {
9432  __pyx_v_ii = __pyx_t_24;
9433 
9434  /* "subsurfaceTransportFunctions.pyx":343
9435  * eN_neighbor = elementNeighborsArray[eN,ebN]
9436  * for ii in range(nnz):
9437  * a_neig[ii] = a_eN[ii] # <<<<<<<<<<<<<<
9438  * if eN_neighbor >= 0:
9439  * matID_neig = elementMaterialTypes[eN_neighbor]
9440  */
9441  __pyx_t_25 = __pyx_v_ii;
9442  __pyx_t_26 = -1;
9443  if (__pyx_t_25 < 0) {
9444  __pyx_t_25 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9445  if (unlikely(__pyx_t_25 < 0)) __pyx_t_26 = 0;
9446  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_26 = 0;
9447  if (unlikely(__pyx_t_26 != -1)) {
9448  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9449  __PYX_ERR(0, 343, __pyx_L1_error)
9450  }
9451  __pyx_t_27 = __pyx_v_ii;
9452  __pyx_t_26 = -1;
9453  if (__pyx_t_27 < 0) {
9454  __pyx_t_27 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9455  if (unlikely(__pyx_t_27 < 0)) __pyx_t_26 = 0;
9456  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_26 = 0;
9457  if (unlikely(__pyx_t_26 != -1)) {
9458  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9459  __PYX_ERR(0, 343, __pyx_L1_error)
9460  }
9461  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_neig.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_a_neig.diminfo[0].strides) = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_eN.rcbuffer->pybuffer.buf, __pyx_t_25, __pyx_pybuffernd_a_eN.diminfo[0].strides));
9462  }
9463 
9464  /* "subsurfaceTransportFunctions.pyx":344
9465  * for ii in range(nnz):
9466  * a_neig[ii] = a_eN[ii]
9467  * if eN_neighbor >= 0: # <<<<<<<<<<<<<<
9468  * matID_neig = elementMaterialTypes[eN_neighbor]
9469  * for ii in range(nnz):
9470  */
9471  __pyx_t_28 = ((__pyx_v_eN_neighbor >= 0) != 0);
9472  if (__pyx_t_28) {
9473 
9474  /* "subsurfaceTransportFunctions.pyx":345
9475  * a_neig[ii] = a_eN[ii]
9476  * if eN_neighbor >= 0:
9477  * matID_neig = elementMaterialTypes[eN_neighbor] # <<<<<<<<<<<<<<
9478  * for ii in range(nnz):
9479  * a_neig[ii] = rho*KWs[matID_neig,ii]
9480  */
9481  __pyx_t_29 = __pyx_v_eN_neighbor;
9482  __pyx_t_19 = -1;
9483  if (__pyx_t_29 < 0) {
9484  __pyx_t_29 += __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape;
9485  if (unlikely(__pyx_t_29 < 0)) __pyx_t_19 = 0;
9486  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape)) __pyx_t_19 = 0;
9487  if (unlikely(__pyx_t_19 != -1)) {
9488  __Pyx_RaiseBufferIndexError(__pyx_t_19);
9489  __PYX_ERR(0, 345, __pyx_L1_error)
9490  }
9491  __pyx_v_matID_neig = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer.buf, __pyx_t_29, __pyx_pybuffernd_elementMaterialTypes.diminfo[0].strides));
9492 
9493  /* "subsurfaceTransportFunctions.pyx":346
9494  * if eN_neighbor >= 0:
9495  * matID_neig = elementMaterialTypes[eN_neighbor]
9496  * for ii in range(nnz): # <<<<<<<<<<<<<<
9497  * a_neig[ii] = rho*KWs[matID_neig,ii]
9498  * for ii in range(nnz):
9499  */
9500  __pyx_t_19 = __pyx_v_nnz;
9501  __pyx_t_23 = __pyx_t_19;
9502  for (__pyx_t_24 = 0; __pyx_t_24 < __pyx_t_23; __pyx_t_24+=1) {
9503  __pyx_v_ii = __pyx_t_24;
9504 
9505  /* "subsurfaceTransportFunctions.pyx":347
9506  * matID_neig = elementMaterialTypes[eN_neighbor]
9507  * for ii in range(nnz):
9508  * a_neig[ii] = rho*KWs[matID_neig,ii] # <<<<<<<<<<<<<<
9509  * for ii in range(nnz):
9510  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9511  */
9512  __pyx_t_30 = __pyx_v_matID_neig;
9513  __pyx_t_31 = __pyx_v_ii;
9514  __pyx_t_26 = -1;
9515  if (__pyx_t_30 < 0) {
9516  __pyx_t_30 += __pyx_pybuffernd_KWs.diminfo[0].shape;
9517  if (unlikely(__pyx_t_30 < 0)) __pyx_t_26 = 0;
9518  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_KWs.diminfo[0].shape)) __pyx_t_26 = 0;
9519  if (__pyx_t_31 < 0) {
9520  __pyx_t_31 += __pyx_pybuffernd_KWs.diminfo[1].shape;
9521  if (unlikely(__pyx_t_31 < 0)) __pyx_t_26 = 1;
9522  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_KWs.diminfo[1].shape)) __pyx_t_26 = 1;
9523  if (unlikely(__pyx_t_26 != -1)) {
9524  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9525  __PYX_ERR(0, 347, __pyx_L1_error)
9526  }
9527  __pyx_t_32 = __pyx_v_ii;
9528  __pyx_t_26 = -1;
9529  if (__pyx_t_32 < 0) {
9530  __pyx_t_32 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9531  if (unlikely(__pyx_t_32 < 0)) __pyx_t_26 = 0;
9532  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_26 = 0;
9533  if (unlikely(__pyx_t_26 != -1)) {
9534  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9535  __PYX_ERR(0, 347, __pyx_L1_error)
9536  }
9537  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_neig.rcbuffer->pybuffer.buf, __pyx_t_32, __pyx_pybuffernd_a_neig.diminfo[0].strides) = (__pyx_v_rho * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_KWs.rcbuffer->pybuffer.buf, __pyx_t_30, __pyx_pybuffernd_KWs.diminfo[0].strides, __pyx_t_31, __pyx_pybuffernd_KWs.diminfo[1].strides)));
9538  }
9539 
9540  /* "subsurfaceTransportFunctions.pyx":344
9541  * for ii in range(nnz):
9542  * a_neig[ii] = a_eN[ii]
9543  * if eN_neighbor >= 0: # <<<<<<<<<<<<<<
9544  * matID_neig = elementMaterialTypes[eN_neighbor]
9545  * for ii in range(nnz):
9546  */
9547  }
9548 
9549  /* "subsurfaceTransportFunctions.pyx":348
9550  * for ii in range(nnz):
9551  * a_neig[ii] = rho*KWs[matID_neig,ii]
9552  * for ii in range(nnz): # <<<<<<<<<<<<<<
9553  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9554  * q_alin[eN,ebN,ii] = a_avg[ii]
9555  */
9556  __pyx_t_19 = __pyx_v_nnz;
9557  __pyx_t_23 = __pyx_t_19;
9558  for (__pyx_t_24 = 0; __pyx_t_24 < __pyx_t_23; __pyx_t_24+=1) {
9559  __pyx_v_ii = __pyx_t_24;
9560 
9561  /* "subsurfaceTransportFunctions.pyx":349
9562  * a_neig[ii] = rho*KWs[matID_neig,ii]
9563  * for ii in range(nnz):
9564  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20) # <<<<<<<<<<<<<<
9565  * q_alin[eN,ebN,ii] = a_avg[ii]
9566  * for I in range(nSpace):
9567  */
9568  __pyx_t_33 = __pyx_v_ii;
9569  __pyx_t_26 = -1;
9570  if (__pyx_t_33 < 0) {
9571  __pyx_t_33 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9572  if (unlikely(__pyx_t_33 < 0)) __pyx_t_26 = 0;
9573  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_26 = 0;
9574  if (unlikely(__pyx_t_26 != -1)) {
9575  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9576  __PYX_ERR(0, 349, __pyx_L1_error)
9577  }
9578  __pyx_t_34 = __pyx_v_ii;
9579  __pyx_t_26 = -1;
9580  if (__pyx_t_34 < 0) {
9581  __pyx_t_34 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9582  if (unlikely(__pyx_t_34 < 0)) __pyx_t_26 = 0;
9583  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_26 = 0;
9584  if (unlikely(__pyx_t_26 != -1)) {
9585  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9586  __PYX_ERR(0, 349, __pyx_L1_error)
9587  }
9588  __pyx_t_35 = ((2.0 * (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_eN.rcbuffer->pybuffer.buf, __pyx_t_33, __pyx_pybuffernd_a_eN.diminfo[0].strides))) * (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_neig.rcbuffer->pybuffer.buf, __pyx_t_34, __pyx_pybuffernd_a_neig.diminfo[0].strides)));
9589  __pyx_t_36 = __pyx_v_ii;
9590  __pyx_t_26 = -1;
9591  if (__pyx_t_36 < 0) {
9592  __pyx_t_36 += __pyx_pybuffernd_a_eN.diminfo[0].shape;
9593  if (unlikely(__pyx_t_36 < 0)) __pyx_t_26 = 0;
9594  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_a_eN.diminfo[0].shape)) __pyx_t_26 = 0;
9595  if (unlikely(__pyx_t_26 != -1)) {
9596  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9597  __PYX_ERR(0, 349, __pyx_L1_error)
9598  }
9599  __pyx_t_37 = __pyx_v_ii;
9600  __pyx_t_26 = -1;
9601  if (__pyx_t_37 < 0) {
9602  __pyx_t_37 += __pyx_pybuffernd_a_neig.diminfo[0].shape;
9603  if (unlikely(__pyx_t_37 < 0)) __pyx_t_26 = 0;
9604  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_a_neig.diminfo[0].shape)) __pyx_t_26 = 0;
9605  if (unlikely(__pyx_t_26 != -1)) {
9606  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9607  __PYX_ERR(0, 349, __pyx_L1_error)
9608  }
9609  __pyx_t_38 = (((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_eN.rcbuffer->pybuffer.buf, __pyx_t_36, __pyx_pybuffernd_a_eN.diminfo[0].strides)) + (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_neig.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_a_neig.diminfo[0].strides))) + 1.0e-20);
9610  if (unlikely(__pyx_t_38 == 0)) {
9611  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
9612  __PYX_ERR(0, 349, __pyx_L1_error)
9613  }
9614  __pyx_t_39 = __pyx_v_ii;
9615  __pyx_t_26 = -1;
9616  if (__pyx_t_39 < 0) {
9617  __pyx_t_39 += __pyx_pybuffernd_a_avg.diminfo[0].shape;
9618  if (unlikely(__pyx_t_39 < 0)) __pyx_t_26 = 0;
9619  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_a_avg.diminfo[0].shape)) __pyx_t_26 = 0;
9620  if (unlikely(__pyx_t_26 != -1)) {
9621  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9622  __PYX_ERR(0, 349, __pyx_L1_error)
9623  }
9624  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_avg.rcbuffer->pybuffer.buf, __pyx_t_39, __pyx_pybuffernd_a_avg.diminfo[0].strides) = (__pyx_t_35 / __pyx_t_38);
9625 
9626  /* "subsurfaceTransportFunctions.pyx":350
9627  * for ii in range(nnz):
9628  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9629  * q_alin[eN,ebN,ii] = a_avg[ii] # <<<<<<<<<<<<<<
9630  * for I in range(nSpace):
9631  * q_flin[eN,ebN,I] = 0.0
9632  */
9633  __pyx_t_40 = __pyx_v_ii;
9634  __pyx_t_26 = -1;
9635  if (__pyx_t_40 < 0) {
9636  __pyx_t_40 += __pyx_pybuffernd_a_avg.diminfo[0].shape;
9637  if (unlikely(__pyx_t_40 < 0)) __pyx_t_26 = 0;
9638  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_a_avg.diminfo[0].shape)) __pyx_t_26 = 0;
9639  if (unlikely(__pyx_t_26 != -1)) {
9640  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9641  __PYX_ERR(0, 350, __pyx_L1_error)
9642  }
9643  __pyx_t_41 = __pyx_v_eN;
9644  __pyx_t_42 = __pyx_v_ebN;
9645  __pyx_t_43 = __pyx_v_ii;
9646  __pyx_t_26 = -1;
9647  if (__pyx_t_41 < 0) {
9648  __pyx_t_41 += __pyx_pybuffernd_q_alin.diminfo[0].shape;
9649  if (unlikely(__pyx_t_41 < 0)) __pyx_t_26 = 0;
9650  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_26 = 0;
9651  if (__pyx_t_42 < 0) {
9652  __pyx_t_42 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
9653  if (unlikely(__pyx_t_42 < 0)) __pyx_t_26 = 1;
9654  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_26 = 1;
9655  if (__pyx_t_43 < 0) {
9656  __pyx_t_43 += __pyx_pybuffernd_q_alin.diminfo[2].shape;
9657  if (unlikely(__pyx_t_43 < 0)) __pyx_t_26 = 2;
9658  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_q_alin.diminfo[2].shape)) __pyx_t_26 = 2;
9659  if (unlikely(__pyx_t_26 != -1)) {
9660  __Pyx_RaiseBufferIndexError(__pyx_t_26);
9661  __PYX_ERR(0, 350, __pyx_L1_error)
9662  }
9663  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_alin.rcbuffer->pybuffer.buf, __pyx_t_41, __pyx_pybuffernd_q_alin.diminfo[0].strides, __pyx_t_42, __pyx_pybuffernd_q_alin.diminfo[1].strides, __pyx_t_43, __pyx_pybuffernd_q_alin.diminfo[2].strides) = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_avg.rcbuffer->pybuffer.buf, __pyx_t_40, __pyx_pybuffernd_a_avg.diminfo[0].strides));
9664  }
9665 
9666  /* "subsurfaceTransportFunctions.pyx":351
9667  * a_avg[ii] = 2.0*a_eN[ii]*a_neig[ii]/(a_eN[ii]+a_neig[ii]+1.0e-20)
9668  * q_alin[eN,ebN,ii] = a_avg[ii]
9669  * for I in range(nSpace): # <<<<<<<<<<<<<<
9670  * q_flin[eN,ebN,I] = 0.0
9671  * for ii in range(rowptr[I],rowptr[I+1]):
9672  */
9673  __pyx_t_19 = __pyx_v_nSpace;
9674  __pyx_t_23 = __pyx_t_19;
9675  for (__pyx_t_24 = 0; __pyx_t_24 < __pyx_t_23; __pyx_t_24+=1) {
9676  __pyx_v_I = __pyx_t_24;
9677 
9678  /* "subsurfaceTransportFunctions.pyx":352
9679  * q_alin[eN,ebN,ii] = a_avg[ii]
9680  * for I in range(nSpace):
9681  * q_flin[eN,ebN,I] = 0.0 # <<<<<<<<<<<<<<
9682  * for ii in range(rowptr[I],rowptr[I+1]):
9683  * q_flin[eN,ebN,I] += rho*a_avg[ii]*gravity[colind[ii]]
9684  */
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9860  *
9861  *
9862  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
9863  * double beta,
9864  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
9865  */
9866 
9867 /* Python wrapper */
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10002  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 7); __PYX_ERR(0, 359, __pyx_L3_error)
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10020  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 10); __PYX_ERR(0, 359, __pyx_L3_error)
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10022  CYTHON_FALLTHROUGH;
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10026  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 11); __PYX_ERR(0, 359, __pyx_L3_error)
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10028  CYTHON_FALLTHROUGH;
10029  case 12:
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10032  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 12); __PYX_ERR(0, 359, __pyx_L3_error)
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10035  case 13:
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10038  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 13); __PYX_ERR(0, 359, __pyx_L3_error)
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10044  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 14); __PYX_ERR(0, 359, __pyx_L3_error)
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10050  __Pyx_RaiseArgtupleInvalid("RE_NCP1_evaluateElementCoefficients_VGM", 1, 24, 24, 15); __PYX_ERR(0, 359, __pyx_L3_error)
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10480 
10481  /* "subsurfaceTransportFunctions.pyx":399
10482  * """
10483  * #check some sizes
10484  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]: # <<<<<<<<<<<<<<
10485  * assert q.shape[1] == nSpace+1
10486  * assert nDOF_trial_element == nSpace + 1
10487  */
10488  __pyx_t_1 = PyTuple_New(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 399, __pyx_L1_error)
10489  __Pyx_GOTREF(__pyx_t_1);
10490  __Pyx_INCREF(((PyObject *)__pyx_v_q_u));
10491  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_u));
10492  PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_q_u));
10493  __Pyx_INCREF(((PyObject *)__pyx_v_q_mass));
10494  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_mass));
10495  PyTuple_SET_ITEM(__pyx_t_1, 1, ((PyObject *)__pyx_v_q_mass));
10496  __Pyx_INCREF(((PyObject *)__pyx_v_q_r));
10497  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_r));
10498  PyTuple_SET_ITEM(__pyx_t_1, 2, ((PyObject *)__pyx_v_q_r));
10499  __Pyx_INCREF(((PyObject *)__pyx_v_q_kr));
10500  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_kr));
10501  PyTuple_SET_ITEM(__pyx_t_1, 3, ((PyObject *)__pyx_v_q_kr));
10502  __Pyx_INCREF(((PyObject *)__pyx_v_q_dkr));
10503  __Pyx_GIVEREF(((PyObject *)__pyx_v_q_dkr));
10504  PyTuple_SET_ITEM(__pyx_t_1, 4, ((PyObject *)__pyx_v_q_dkr));
10505  __pyx_t_2 = __pyx_t_1; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
10506  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10507  for (;;) {
10508  if (__pyx_t_3 >= 5) break;
10509  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10510  __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_1); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 399, __pyx_L1_error)
10511  #else
10512  __pyx_t_1 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 399, __pyx_L1_error)
10513  __Pyx_GOTREF(__pyx_t_1);
10514  #endif
10515  __Pyx_XDECREF_SET(__pyx_v_q, __pyx_t_1);
10516  __pyx_t_1 = 0;
10517 
10518  /* "subsurfaceTransportFunctions.pyx":400
10519  * #check some sizes
10520  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]:
10521  * assert q.shape[1] == nSpace+1 # <<<<<<<<<<<<<<
10522  * assert nDOF_trial_element == nSpace + 1
10523  * #temporaries
10524  */
10525  #ifndef CYTHON_WITHOUT_ASSERTIONS
10526  if (unlikely(!Py_OptimizeFlag)) {
10527  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_q, __pyx_n_s_shape); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 400, __pyx_L1_error)
10528  __Pyx_GOTREF(__pyx_t_1);
10529  __pyx_t_4 = __Pyx_GetItemInt(__pyx_t_1, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 400, __pyx_L1_error)
10530  __Pyx_GOTREF(__pyx_t_4);
10531  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10532  __pyx_t_1 = __Pyx_PyInt_From_long((__pyx_v_nSpace + 1)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 400, __pyx_L1_error)
10533  __Pyx_GOTREF(__pyx_t_1);
10534  __pyx_t_5 = PyObject_RichCompare(__pyx_t_4, __pyx_t_1, Py_EQ); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 400, __pyx_L1_error)
10535  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
10536  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10537  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(0, 400, __pyx_L1_error)
10538  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
10539  if (unlikely(!__pyx_t_6)) {
10540  PyErr_SetNone(PyExc_AssertionError);
10541  __PYX_ERR(0, 400, __pyx_L1_error)
10542  }
10543  }
10544  #endif
10545 
10546  /* "subsurfaceTransportFunctions.pyx":399
10547  * """
10548  * #check some sizes
10549  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]: # <<<<<<<<<<<<<<
10550  * assert q.shape[1] == nSpace+1
10551  * assert nDOF_trial_element == nSpace + 1
10552  */
10553  }
10554  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10555 
10556  /* "subsurfaceTransportFunctions.pyx":401
10557  * for q in [q_u,q_mass,q_r,q_kr,q_dkr]:
10558  * assert q.shape[1] == nSpace+1
10559  * assert nDOF_trial_element == nSpace + 1 # <<<<<<<<<<<<<<
10560  * #temporaries
10561  * cdef double psiC,pcBar,pcBar_n,pcBar_nM1,pcBar_nM2,onePlus_pcBar_n,sBar,sqrt_sBar,DsBar_DpsiC,thetaW,DthetaW_DpsiC
10562  */
10563  #ifndef CYTHON_WITHOUT_ASSERTIONS
10564  if (unlikely(!Py_OptimizeFlag)) {
10565  if (unlikely(!((__pyx_v_nDOF_trial_element == (__pyx_v_nSpace + 1)) != 0))) {
10566  PyErr_SetNone(PyExc_AssertionError);
10567  __PYX_ERR(0, 401, __pyx_L1_error)
10568  }
10569  }
10570  #endif
10571 
10572  /* "subsurfaceTransportFunctions.pyx":404
10573  * #temporaries
10574  * cdef double psiC,pcBar,pcBar_n,pcBar_nM1,pcBar_nM2,onePlus_pcBar_n,sBar,sqrt_sBar,DsBar_DpsiC,thetaW,DthetaW_DpsiC
10575  * cdef double vBar,vBar2,DvBar_DpsiC,KWr,DKWr_DpsiC,rho2=rho*rho,thetaS,rhom,drhom,m # <<<<<<<<<<<<<<
10576  *
10577  * cdef double u_j,u_eN,u_neig,kr_eN,kr_neig,phi_eN,phi_neig
10578  */
10579  __pyx_v_rho2 = (__pyx_v_rho * __pyx_v_rho);
10580 
10581  /* "subsurfaceTransportFunctions.pyx":409
10582  * cdef int eN,eN_neighbor,ebN,ii,I,j,matID
10583  * #for averaging/integration weights
10584  * cdef double nAvgWeight = 1.0/(nSpace+1.) # <<<<<<<<<<<<<<
10585  *
10586  * #loop through and evaluate
10587  */
10588  __pyx_t_7 = (__pyx_v_nSpace + 1.);
10589  if (unlikely(__pyx_t_7 == 0)) {
10590  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10591  __PYX_ERR(0, 409, __pyx_L1_error)
10592  }
10593  __pyx_v_nAvgWeight = (1.0 / __pyx_t_7);
10594 
10595  /* "subsurfaceTransportFunctions.pyx":412
10596  *
10597  * #loop through and evaluate
10598  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
10599  * matID = elementMaterialTypes[eN]
10600  * for j in range(nDOF_trial_element):
10601  */
10602  __pyx_t_8 = __pyx_v_nElements_global;
10603  __pyx_t_9 = __pyx_t_8;
10604  for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
10605  __pyx_v_eN = __pyx_t_10;
10606 
10607  /* "subsurfaceTransportFunctions.pyx":413
10608  * #loop through and evaluate
10609  * for eN in range(nElements_global):
10610  * matID = elementMaterialTypes[eN] # <<<<<<<<<<<<<<
10611  * for j in range(nDOF_trial_element):
10612  * u_j = u_dof[u_l2g[eN,j]]
10613  */
10614  __pyx_t_11 = __pyx_v_eN;
10615  __pyx_t_12 = -1;
10616  if (__pyx_t_11 < 0) {
10617  __pyx_t_11 += __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape;
10618  if (unlikely(__pyx_t_11 < 0)) __pyx_t_12 = 0;
10619  } else if (unlikely(__pyx_t_11 >= __pyx_pybuffernd_elementMaterialTypes.diminfo[0].shape)) __pyx_t_12 = 0;
10620  if (unlikely(__pyx_t_12 != -1)) {
10621  __Pyx_RaiseBufferIndexError(__pyx_t_12);
10622  __PYX_ERR(0, 413, __pyx_L1_error)
10623  }
10624  __pyx_v_matID = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_elementMaterialTypes.rcbuffer->pybuffer.buf, __pyx_t_11, __pyx_pybuffernd_elementMaterialTypes.diminfo[0].strides));
10625 
10626  /* "subsurfaceTransportFunctions.pyx":414
10627  * for eN in range(nElements_global):
10628  * matID = elementMaterialTypes[eN]
10629  * for j in range(nDOF_trial_element): # <<<<<<<<<<<<<<
10630  * u_j = u_dof[u_l2g[eN,j]]
10631  * q_u[eN,j] = u_j
10632  */
10633  __pyx_t_12 = __pyx_v_nDOF_trial_element;
10634  __pyx_t_13 = __pyx_t_12;
10635  for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
10636  __pyx_v_j = __pyx_t_14;
10637 
10638  /* "subsurfaceTransportFunctions.pyx":415
10639  * matID = elementMaterialTypes[eN]
10640  * for j in range(nDOF_trial_element):
10641  * u_j = u_dof[u_l2g[eN,j]] # <<<<<<<<<<<<<<
10642  * q_u[eN,j] = u_j
10643  *
10644  */
10645  __pyx_t_15 = __pyx_v_eN;
10646  __pyx_t_16 = __pyx_v_j;
10647  __pyx_t_17 = -1;
10648  if (__pyx_t_15 < 0) {
10649  __pyx_t_15 += __pyx_pybuffernd_u_l2g.diminfo[0].shape;
10650  if (unlikely(__pyx_t_15 < 0)) __pyx_t_17 = 0;
10651  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_u_l2g.diminfo[0].shape)) __pyx_t_17 = 0;
10652  if (__pyx_t_16 < 0) {
10653  __pyx_t_16 += __pyx_pybuffernd_u_l2g.diminfo[1].shape;
10654  if (unlikely(__pyx_t_16 < 0)) __pyx_t_17 = 1;
10655  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_u_l2g.diminfo[1].shape)) __pyx_t_17 = 1;
10656  if (unlikely(__pyx_t_17 != -1)) {
10657  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10658  __PYX_ERR(0, 415, __pyx_L1_error)
10659  }
10660  __pyx_t_18 = (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_u_l2g.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_u_l2g.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_u_l2g.diminfo[1].strides));
10661  __pyx_t_17 = -1;
10662  if (__pyx_t_18 < 0) {
10663  __pyx_t_18 += __pyx_pybuffernd_u_dof.diminfo[0].shape;
10664  if (unlikely(__pyx_t_18 < 0)) __pyx_t_17 = 0;
10665  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_u_dof.diminfo[0].shape)) __pyx_t_17 = 0;
10666  if (unlikely(__pyx_t_17 != -1)) {
10667  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10668  __PYX_ERR(0, 415, __pyx_L1_error)
10669  }
10670  __pyx_v_u_j = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_u_dof.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_u_dof.diminfo[0].strides));
10671 
10672  /* "subsurfaceTransportFunctions.pyx":416
10673  * for j in range(nDOF_trial_element):
10674  * u_j = u_dof[u_l2g[eN,j]]
10675  * q_u[eN,j] = u_j # <<<<<<<<<<<<<<
10676  *
10677  * #VGM evaluation
10678  */
10679  __pyx_t_19 = __pyx_v_eN;
10680  __pyx_t_20 = __pyx_v_j;
10681  __pyx_t_17 = -1;
10682  if (__pyx_t_19 < 0) {
10683  __pyx_t_19 += __pyx_pybuffernd_q_u.diminfo[0].shape;
10684  if (unlikely(__pyx_t_19 < 0)) __pyx_t_17 = 0;
10685  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_q_u.diminfo[0].shape)) __pyx_t_17 = 0;
10686  if (__pyx_t_20 < 0) {
10687  __pyx_t_20 += __pyx_pybuffernd_q_u.diminfo[1].shape;
10688  if (unlikely(__pyx_t_20 < 0)) __pyx_t_17 = 1;
10689  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_q_u.diminfo[1].shape)) __pyx_t_17 = 1;
10690  if (unlikely(__pyx_t_17 != -1)) {
10691  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10692  __PYX_ERR(0, 416, __pyx_L1_error)
10693  }
10694  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_u.rcbuffer->pybuffer.buf, __pyx_t_19, __pyx_pybuffernd_q_u.diminfo[0].strides, __pyx_t_20, __pyx_pybuffernd_q_u.diminfo[1].strides) = __pyx_v_u_j;
10695 
10696  /* "subsurfaceTransportFunctions.pyx":419
10697  *
10698  * #VGM evaluation
10699  * psiC = -u_j # <<<<<<<<<<<<<<
10700  * m = 1.0 - 1.0/n[matID]
10701  * thetaS = thetaR[matID] + thetaSR[matID]
10702  */
10703  __pyx_v_psiC = (-__pyx_v_u_j);
10704 
10705  /* "subsurfaceTransportFunctions.pyx":420
10706  * #VGM evaluation
10707  * psiC = -u_j
10708  * m = 1.0 - 1.0/n[matID] # <<<<<<<<<<<<<<
10709  * thetaS = thetaR[matID] + thetaSR[matID]
10710  * if psiC > 0.0:
10711  */
10712  __pyx_t_21 = __pyx_v_matID;
10713  __pyx_t_17 = -1;
10714  if (__pyx_t_21 < 0) {
10715  __pyx_t_21 += __pyx_pybuffernd_n.diminfo[0].shape;
10716  if (unlikely(__pyx_t_21 < 0)) __pyx_t_17 = 0;
10717  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_17 = 0;
10718  if (unlikely(__pyx_t_17 != -1)) {
10719  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10720  __PYX_ERR(0, 420, __pyx_L1_error)
10721  }
10722  __pyx_t_22 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_21, __pyx_pybuffernd_n.diminfo[0].strides));
10723  if (unlikely(__pyx_t_22 == 0)) {
10724  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10725  __PYX_ERR(0, 420, __pyx_L1_error)
10726  }
10727  __pyx_v_m = (1.0 - (1.0 / __pyx_t_22));
10728 
10729  /* "subsurfaceTransportFunctions.pyx":421
10730  * psiC = -u_j
10731  * m = 1.0 - 1.0/n[matID]
10732  * thetaS = thetaR[matID] + thetaSR[matID] # <<<<<<<<<<<<<<
10733  * if psiC > 0.0:
10734  * pcBar = alpha[matID]*psiC
10735  */
10736  __pyx_t_23 = __pyx_v_matID;
10737  __pyx_t_17 = -1;
10738  if (__pyx_t_23 < 0) {
10739  __pyx_t_23 += __pyx_pybuffernd_thetaR.diminfo[0].shape;
10740  if (unlikely(__pyx_t_23 < 0)) __pyx_t_17 = 0;
10741  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_thetaR.diminfo[0].shape)) __pyx_t_17 = 0;
10742  if (unlikely(__pyx_t_17 != -1)) {
10743  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10744  __PYX_ERR(0, 421, __pyx_L1_error)
10745  }
10746  __pyx_t_24 = __pyx_v_matID;
10747  __pyx_t_17 = -1;
10748  if (__pyx_t_24 < 0) {
10749  __pyx_t_24 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10750  if (unlikely(__pyx_t_24 < 0)) __pyx_t_17 = 0;
10751  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_17 = 0;
10752  if (unlikely(__pyx_t_17 != -1)) {
10753  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10754  __PYX_ERR(0, 421, __pyx_L1_error)
10755  }
10756  __pyx_v_thetaS = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaR.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_thetaR.diminfo[0].strides)) + (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_24, __pyx_pybuffernd_thetaSR.diminfo[0].strides)));
10757 
10758  /* "subsurfaceTransportFunctions.pyx":422
10759  * m = 1.0 - 1.0/n[matID]
10760  * thetaS = thetaR[matID] + thetaSR[matID]
10761  * if psiC > 0.0: # <<<<<<<<<<<<<<
10762  * pcBar = alpha[matID]*psiC
10763  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10764  */
10765  __pyx_t_6 = ((__pyx_v_psiC > 0.0) != 0);
10766  if (__pyx_t_6) {
10767 
10768  /* "subsurfaceTransportFunctions.pyx":423
10769  * thetaS = thetaR[matID] + thetaSR[matID]
10770  * if psiC > 0.0:
10771  * pcBar = alpha[matID]*psiC # <<<<<<<<<<<<<<
10772  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10773  * pcBar_nM1 = pcBar_nM2*pcBar
10774  */
10775  __pyx_t_25 = __pyx_v_matID;
10776  __pyx_t_17 = -1;
10777  if (__pyx_t_25 < 0) {
10778  __pyx_t_25 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10779  if (unlikely(__pyx_t_25 < 0)) __pyx_t_17 = 0;
10780  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_17 = 0;
10781  if (unlikely(__pyx_t_17 != -1)) {
10782  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10783  __PYX_ERR(0, 423, __pyx_L1_error)
10784  }
10785  __pyx_v_pcBar = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_25, __pyx_pybuffernd_alpha.diminfo[0].strides)) * __pyx_v_psiC);
10786 
10787  /* "subsurfaceTransportFunctions.pyx":424
10788  * if psiC > 0.0:
10789  * pcBar = alpha[matID]*psiC
10790  * pcBar_nM2 = pow(pcBar,n[matID]-2) # <<<<<<<<<<<<<<
10791  * pcBar_nM1 = pcBar_nM2*pcBar
10792  * pcBar_n = pcBar_nM1*pcBar
10793  */
10794  __pyx_t_26 = __pyx_v_matID;
10795  __pyx_t_17 = -1;
10796  if (__pyx_t_26 < 0) {
10797  __pyx_t_26 += __pyx_pybuffernd_n.diminfo[0].shape;
10798  if (unlikely(__pyx_t_26 < 0)) __pyx_t_17 = 0;
10799  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_17 = 0;
10800  if (unlikely(__pyx_t_17 != -1)) {
10801  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10802  __PYX_ERR(0, 424, __pyx_L1_error)
10803  }
10804  __pyx_v_pcBar_nM2 = pow(__pyx_v_pcBar, ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_26, __pyx_pybuffernd_n.diminfo[0].strides)) - 2.0));
10805 
10806  /* "subsurfaceTransportFunctions.pyx":425
10807  * pcBar = alpha[matID]*psiC
10808  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10809  * pcBar_nM1 = pcBar_nM2*pcBar # <<<<<<<<<<<<<<
10810  * pcBar_n = pcBar_nM1*pcBar
10811  * onePlus_pcBar_n = 1.0 + pcBar_n
10812  */
10813  __pyx_v_pcBar_nM1 = (__pyx_v_pcBar_nM2 * __pyx_v_pcBar);
10814 
10815  /* "subsurfaceTransportFunctions.pyx":426
10816  * pcBar_nM2 = pow(pcBar,n[matID]-2)
10817  * pcBar_nM1 = pcBar_nM2*pcBar
10818  * pcBar_n = pcBar_nM1*pcBar # <<<<<<<<<<<<<<
10819  * onePlus_pcBar_n = 1.0 + pcBar_n
10820  *
10821  */
10822  __pyx_v_pcBar_n = (__pyx_v_pcBar_nM1 * __pyx_v_pcBar);
10823 
10824  /* "subsurfaceTransportFunctions.pyx":427
10825  * pcBar_nM1 = pcBar_nM2*pcBar
10826  * pcBar_n = pcBar_nM1*pcBar
10827  * onePlus_pcBar_n = 1.0 + pcBar_n # <<<<<<<<<<<<<<
10828  *
10829  * sBar = pow(onePlus_pcBar_n,-m)
10830  */
10831  __pyx_v_onePlus_pcBar_n = (1.0 + __pyx_v_pcBar_n);
10832 
10833  /* "subsurfaceTransportFunctions.pyx":429
10834  * onePlus_pcBar_n = 1.0 + pcBar_n
10835  *
10836  * sBar = pow(onePlus_pcBar_n,-m) # <<<<<<<<<<<<<<
10837  * # using -mn = 1-n
10838  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1
10839  */
10840  __pyx_v_sBar = pow(__pyx_v_onePlus_pcBar_n, (-__pyx_v_m));
10841 
10842  /* "subsurfaceTransportFunctions.pyx":431
10843  * sBar = pow(onePlus_pcBar_n,-m)
10844  * # using -mn = 1-n
10845  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1 # <<<<<<<<<<<<<<
10846  *
10847  * vBar = 1.0-pcBar_nM1*sBar
10848  */
10849  __pyx_t_27 = __pyx_v_matID;
10850  __pyx_t_17 = -1;
10851  if (__pyx_t_27 < 0) {
10852  __pyx_t_27 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10853  if (unlikely(__pyx_t_27 < 0)) __pyx_t_17 = 0;
10854  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_17 = 0;
10855  if (unlikely(__pyx_t_17 != -1)) {
10856  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10857  __PYX_ERR(0, 431, __pyx_L1_error)
10858  }
10859  __pyx_t_28 = __pyx_v_matID;
10860  __pyx_t_17 = -1;
10861  if (__pyx_t_28 < 0) {
10862  __pyx_t_28 += __pyx_pybuffernd_n.diminfo[0].shape;
10863  if (unlikely(__pyx_t_28 < 0)) __pyx_t_17 = 0;
10864  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_17 = 0;
10865  if (unlikely(__pyx_t_17 != -1)) {
10866  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10867  __PYX_ERR(0, 431, __pyx_L1_error)
10868  }
10869  if (unlikely(__pyx_v_onePlus_pcBar_n == 0)) {
10870  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10871  __PYX_ERR(0, 431, __pyx_L1_error)
10872  }
10873  __pyx_v_DsBar_DpsiC = ((((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_alpha.diminfo[0].strides)) * (1.0 - (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_28, __pyx_pybuffernd_n.diminfo[0].strides)))) * (__pyx_v_sBar / __pyx_v_onePlus_pcBar_n)) * __pyx_v_pcBar_nM1);
10874 
10875  /* "subsurfaceTransportFunctions.pyx":433
10876  * DsBar_DpsiC = alpha[matID]*(1.0-n[matID])*(sBar/onePlus_pcBar_n)*pcBar_nM1
10877  *
10878  * vBar = 1.0-pcBar_nM1*sBar # <<<<<<<<<<<<<<
10879  * vBar2 = vBar*vBar
10880  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10881  */
10882  __pyx_v_vBar = (1.0 - (__pyx_v_pcBar_nM1 * __pyx_v_sBar));
10883 
10884  /* "subsurfaceTransportFunctions.pyx":434
10885  *
10886  * vBar = 1.0-pcBar_nM1*sBar
10887  * vBar2 = vBar*vBar # <<<<<<<<<<<<<<
10888  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10889  *
10890  */
10891  __pyx_v_vBar2 = (__pyx_v_vBar * __pyx_v_vBar);
10892 
10893  /* "subsurfaceTransportFunctions.pyx":435
10894  * vBar = 1.0-pcBar_nM1*sBar
10895  * vBar2 = vBar*vBar
10896  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC # <<<<<<<<<<<<<<
10897  *
10898  * thetaW = thetaSR[matID]*sBar + thetaR[matID]
10899  */
10900  __pyx_t_29 = __pyx_v_matID;
10901  __pyx_t_17 = -1;
10902  if (__pyx_t_29 < 0) {
10903  __pyx_t_29 += __pyx_pybuffernd_alpha.diminfo[0].shape;
10904  if (unlikely(__pyx_t_29 < 0)) __pyx_t_17 = 0;
10905  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_alpha.diminfo[0].shape)) __pyx_t_17 = 0;
10906  if (unlikely(__pyx_t_17 != -1)) {
10907  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10908  __PYX_ERR(0, 435, __pyx_L1_error)
10909  }
10910  __pyx_t_30 = __pyx_v_matID;
10911  __pyx_t_17 = -1;
10912  if (__pyx_t_30 < 0) {
10913  __pyx_t_30 += __pyx_pybuffernd_n.diminfo[0].shape;
10914  if (unlikely(__pyx_t_30 < 0)) __pyx_t_17 = 0;
10915  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_n.diminfo[0].shape)) __pyx_t_17 = 0;
10916  if (unlikely(__pyx_t_17 != -1)) {
10917  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10918  __PYX_ERR(0, 435, __pyx_L1_error)
10919  }
10920  __pyx_v_DvBar_DpsiC = (((((-(*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_alpha.rcbuffer->pybuffer.buf, __pyx_t_29, __pyx_pybuffernd_alpha.diminfo[0].strides))) * ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_n.rcbuffer->pybuffer.buf, __pyx_t_30, __pyx_pybuffernd_n.diminfo[0].strides)) - 1.0)) * __pyx_v_pcBar_nM2) * __pyx_v_sBar) - (__pyx_v_pcBar_nM1 * __pyx_v_DsBar_DpsiC));
10921 
10922  /* "subsurfaceTransportFunctions.pyx":437
10923  * DvBar_DpsiC = -alpha[matID]*(n[matID]-1.0)*pcBar_nM2*sBar - pcBar_nM1*DsBar_DpsiC
10924  *
10925  * thetaW = thetaSR[matID]*sBar + thetaR[matID] # <<<<<<<<<<<<<<
10926  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC
10927  *
10928  */
10929  __pyx_t_31 = __pyx_v_matID;
10930  __pyx_t_17 = -1;
10931  if (__pyx_t_31 < 0) {
10932  __pyx_t_31 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10933  if (unlikely(__pyx_t_31 < 0)) __pyx_t_17 = 0;
10934  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_17 = 0;
10935  if (unlikely(__pyx_t_17 != -1)) {
10936  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10937  __PYX_ERR(0, 437, __pyx_L1_error)
10938  }
10939  __pyx_t_32 = __pyx_v_matID;
10940  __pyx_t_17 = -1;
10941  if (__pyx_t_32 < 0) {
10942  __pyx_t_32 += __pyx_pybuffernd_thetaR.diminfo[0].shape;
10943  if (unlikely(__pyx_t_32 < 0)) __pyx_t_17 = 0;
10944  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_thetaR.diminfo[0].shape)) __pyx_t_17 = 0;
10945  if (unlikely(__pyx_t_17 != -1)) {
10946  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10947  __PYX_ERR(0, 437, __pyx_L1_error)
10948  }
10949  __pyx_v_thetaW = (((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_31, __pyx_pybuffernd_thetaSR.diminfo[0].strides)) * __pyx_v_sBar) + (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaR.rcbuffer->pybuffer.buf, __pyx_t_32, __pyx_pybuffernd_thetaR.diminfo[0].strides)));
10950 
10951  /* "subsurfaceTransportFunctions.pyx":438
10952  *
10953  * thetaW = thetaSR[matID]*sBar + thetaR[matID]
10954  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC # <<<<<<<<<<<<<<
10955  *
10956  * sqrt_sBar = sqrt(sBar)
10957  */
10958  __pyx_t_33 = __pyx_v_matID;
10959  __pyx_t_17 = -1;
10960  if (__pyx_t_33 < 0) {
10961  __pyx_t_33 += __pyx_pybuffernd_thetaSR.diminfo[0].shape;
10962  if (unlikely(__pyx_t_33 < 0)) __pyx_t_17 = 0;
10963  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_thetaSR.diminfo[0].shape)) __pyx_t_17 = 0;
10964  if (unlikely(__pyx_t_17 != -1)) {
10965  __Pyx_RaiseBufferIndexError(__pyx_t_17);
10966  __PYX_ERR(0, 438, __pyx_L1_error)
10967  }
10968  __pyx_v_DthetaW_DpsiC = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_thetaSR.rcbuffer->pybuffer.buf, __pyx_t_33, __pyx_pybuffernd_thetaSR.diminfo[0].strides)) * __pyx_v_DsBar_DpsiC);
10969 
10970  /* "subsurfaceTransportFunctions.pyx":440
10971  * DthetaW_DpsiC = thetaSR[matID] * DsBar_DpsiC
10972  *
10973  * sqrt_sBar = sqrt(sBar) # <<<<<<<<<<<<<<
10974  * KWr= sqrt_sBar*vBar2
10975  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
10976  */
10977  __pyx_v_sqrt_sBar = sqrt(__pyx_v_sBar);
10978 
10979  /* "subsurfaceTransportFunctions.pyx":441
10980  *
10981  * sqrt_sBar = sqrt(sBar)
10982  * KWr= sqrt_sBar*vBar2 # <<<<<<<<<<<<<<
10983  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
10984  * else:
10985  */
10986  __pyx_v_KWr = (__pyx_v_sqrt_sBar * __pyx_v_vBar2);
10987 
10988  /* "subsurfaceTransportFunctions.pyx":442
10989  * sqrt_sBar = sqrt(sBar)
10990  * KWr= sqrt_sBar*vBar2
10991  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC) # <<<<<<<<<<<<<<
10992  * else:
10993  * thetaW = thetaS
10994  */
10995  if (unlikely(__pyx_v_sqrt_sBar == 0)) {
10996  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
10997  __PYX_ERR(0, 442, __pyx_L1_error)
10998  }
10999  __pyx_v_DKWr_DpsiC = ((((0.5 / __pyx_v_sqrt_sBar) * __pyx_v_DsBar_DpsiC) * __pyx_v_vBar2) + (((2.0 * __pyx_v_sqrt_sBar) * __pyx_v_vBar) * __pyx_v_DvBar_DpsiC));
11000 
11001  /* "subsurfaceTransportFunctions.pyx":422
11002  * m = 1.0 - 1.0/n[matID]
11003  * thetaS = thetaR[matID] + thetaSR[matID]
11004  * if psiC > 0.0: # <<<<<<<<<<<<<<
11005  * pcBar = alpha[matID]*psiC
11006  * pcBar_nM2 = pow(pcBar,n[matID]-2)
11007  */
11008  goto __pyx_L9;
11009  }
11010 
11011  /* "subsurfaceTransportFunctions.pyx":444
11012  * DKWr_DpsiC= ((0.5/sqrt_sBar)*DsBar_DpsiC*vBar2 + 2.0*sqrt_sBar*vBar*DvBar_DpsiC)
11013  * else:
11014  * thetaW = thetaS # <<<<<<<<<<<<<<
11015  * DthetaW_DpsiC = 0.0
11016  * KWr = 1.0
11017  */
11018  /*else*/ {
11019  __pyx_v_thetaW = __pyx_v_thetaS;
11020 
11021  /* "subsurfaceTransportFunctions.pyx":445
11022  * else:
11023  * thetaW = thetaS
11024  * DthetaW_DpsiC = 0.0 # <<<<<<<<<<<<<<
11025  * KWr = 1.0
11026  * DKWr_DpsiC = 0.0
11027  */
11028  __pyx_v_DthetaW_DpsiC = 0.0;
11029 
11030  /* "subsurfaceTransportFunctions.pyx":446
11031  * thetaW = thetaS
11032  * DthetaW_DpsiC = 0.0
11033  * KWr = 1.0 # <<<<<<<<<<<<<<
11034  * DKWr_DpsiC = 0.0
11035  * #
11036  */
11037  __pyx_v_KWr = 1.0;
11038 
11039  /* "subsurfaceTransportFunctions.pyx":447
11040  * DthetaW_DpsiC = 0.0
11041  * KWr = 1.0
11042  * DKWr_DpsiC = 0.0 # <<<<<<<<<<<<<<
11043  * #
11044  * rhom = rho*exp(beta*u_j)
11045  */
11046  __pyx_v_DKWr_DpsiC = 0.0;
11047  }
11048  __pyx_L9:;
11049 
11050  /* "subsurfaceTransportFunctions.pyx":449
11051  * DKWr_DpsiC = 0.0
11052  * #
11053  * rhom = rho*exp(beta*u_j) # <<<<<<<<<<<<<<
11054  * drhom= beta*rhom
11055  * q_mass[eN,j] = rhom*thetaW
11056  */
11057  __pyx_v_rhom = (__pyx_v_rho * exp((__pyx_v_beta * __pyx_v_u_j)));
11058 
11059  /* "subsurfaceTransportFunctions.pyx":450
11060  * #
11061  * rhom = rho*exp(beta*u_j)
11062  * drhom= beta*rhom # <<<<<<<<<<<<<<
11063  * q_mass[eN,j] = rhom*thetaW
11064  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
11065  */
11066  __pyx_v_drhom = (__pyx_v_beta * __pyx_v_rhom);
11067 
11068  /* "subsurfaceTransportFunctions.pyx":451
11069  * rhom = rho*exp(beta*u_j)
11070  * drhom= beta*rhom
11071  * q_mass[eN,j] = rhom*thetaW # <<<<<<<<<<<<<<
11072  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
11073  *
11074  */
11075  __pyx_t_34 = __pyx_v_eN;
11076  __pyx_t_35 = __pyx_v_j;
11077  __pyx_t_17 = -1;
11078  if (__pyx_t_34 < 0) {
11079  __pyx_t_34 += __pyx_pybuffernd_q_mass.diminfo[0].shape;
11080  if (unlikely(__pyx_t_34 < 0)) __pyx_t_17 = 0;
11081  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_q_mass.diminfo[0].shape)) __pyx_t_17 = 0;
11082  if (__pyx_t_35 < 0) {
11083  __pyx_t_35 += __pyx_pybuffernd_q_mass.diminfo[1].shape;
11084  if (unlikely(__pyx_t_35 < 0)) __pyx_t_17 = 1;
11085  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_mass.diminfo[1].shape)) __pyx_t_17 = 1;
11086  if (unlikely(__pyx_t_17 != -1)) {
11087  __Pyx_RaiseBufferIndexError(__pyx_t_17);
11088  __PYX_ERR(0, 451, __pyx_L1_error)
11089  }
11090  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_mass.rcbuffer->pybuffer.buf, __pyx_t_34, __pyx_pybuffernd_q_mass.diminfo[0].strides, __pyx_t_35, __pyx_pybuffernd_q_mass.diminfo[1].strides) = (__pyx_v_rhom * __pyx_v_thetaW);
11091 
11092  /* "subsurfaceTransportFunctions.pyx":452
11093  * drhom= beta*rhom
11094  * q_mass[eN,j] = rhom*thetaW
11095  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW # <<<<<<<<<<<<<<
11096  *
11097  * q_kr[eN,j] = KWr
11098  */
11099  __pyx_t_36 = __pyx_v_eN;
11100  __pyx_t_37 = __pyx_v_j;
11101  __pyx_t_17 = -1;
11102  if (__pyx_t_36 < 0) {
11103  __pyx_t_36 += __pyx_pybuffernd_q_dmass.diminfo[0].shape;
11104  if (unlikely(__pyx_t_36 < 0)) __pyx_t_17 = 0;
11105  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_q_dmass.diminfo[0].shape)) __pyx_t_17 = 0;
11106  if (__pyx_t_37 < 0) {
11107  __pyx_t_37 += __pyx_pybuffernd_q_dmass.diminfo[1].shape;
11108  if (unlikely(__pyx_t_37 < 0)) __pyx_t_17 = 1;
11109  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_q_dmass.diminfo[1].shape)) __pyx_t_17 = 1;
11110  if (unlikely(__pyx_t_17 != -1)) {
11111  __Pyx_RaiseBufferIndexError(__pyx_t_17);
11112  __PYX_ERR(0, 452, __pyx_L1_error)
11113  }
11114  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_dmass.rcbuffer->pybuffer.buf, __pyx_t_36, __pyx_pybuffernd_q_dmass.diminfo[0].strides, __pyx_t_37, __pyx_pybuffernd_q_dmass.diminfo[1].strides) = (((-__pyx_v_rhom) * __pyx_v_DthetaW_DpsiC) + (__pyx_v_drhom * __pyx_v_thetaW));
11115 
11116  /* "subsurfaceTransportFunctions.pyx":454
11117  * q_dmass[eN,j]=-rhom*DthetaW_DpsiC+drhom*thetaW
11118  *
11119  * q_kr[eN,j] = KWr # <<<<<<<<<<<<<<
11120  * q_dkr[eN,j]= -DKWr_DpsiC
11121  *
11122  */
11123  __pyx_t_38 = __pyx_v_eN;
11124  __pyx_t_39 = __pyx_v_j;
11125  __pyx_t_17 = -1;
11126  if (__pyx_t_38 < 0) {
11127  __pyx_t_38 += __pyx_pybuffernd_q_kr.diminfo[0].shape;
11128  if (unlikely(__pyx_t_38 < 0)) __pyx_t_17 = 0;
11129  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_q_kr.diminfo[0].shape)) __pyx_t_17 = 0;
11130  if (__pyx_t_39 < 0) {
11131  __pyx_t_39 += __pyx_pybuffernd_q_kr.diminfo[1].shape;
11132  if (unlikely(__pyx_t_39 < 0)) __pyx_t_17 = 1;
11133  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_q_kr.diminfo[1].shape)) __pyx_t_17 = 1;
11134  if (unlikely(__pyx_t_17 != -1)) {
11135  __Pyx_RaiseBufferIndexError(__pyx_t_17);
11136  __PYX_ERR(0, 454, __pyx_L1_error)
11137  }
11138  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_q_kr.diminfo[0].strides, __pyx_t_39, __pyx_pybuffernd_q_kr.diminfo[1].strides) = __pyx_v_KWr;
11139 
11140  /* "subsurfaceTransportFunctions.pyx":455
11141  *
11142  * q_kr[eN,j] = KWr
11143  * q_dkr[eN,j]= -DKWr_DpsiC # <<<<<<<<<<<<<<
11144  *
11145  * #j
11146  */
11147  __pyx_t_40 = __pyx_v_eN;
11148  __pyx_t_41 = __pyx_v_j;
11149  __pyx_t_17 = -1;
11150  if (__pyx_t_40 < 0) {
11151  __pyx_t_40 += __pyx_pybuffernd_q_dkr.diminfo[0].shape;
11152  if (unlikely(__pyx_t_40 < 0)) __pyx_t_17 = 0;
11153  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_q_dkr.diminfo[0].shape)) __pyx_t_17 = 0;
11154  if (__pyx_t_41 < 0) {
11155  __pyx_t_41 += __pyx_pybuffernd_q_dkr.diminfo[1].shape;
11156  if (unlikely(__pyx_t_41 < 0)) __pyx_t_17 = 1;
11157  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_dkr.diminfo[1].shape)) __pyx_t_17 = 1;
11158  if (unlikely(__pyx_t_17 != -1)) {
11159  __Pyx_RaiseBufferIndexError(__pyx_t_17);
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11675  * #eN for upwind
11676  *
11677  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
11678  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
11679  * numpy.ndarray[ITYPE_t,ndim=1] colind,
11680  */
11681 
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11750  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
11751  CYTHON_FALLTHROUGH;
11752  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
11753  CYTHON_FALLTHROUGH;
11754  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
11755  CYTHON_FALLTHROUGH;
11756  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
11757  CYTHON_FALLTHROUGH;
11758  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
11759  CYTHON_FALLTHROUGH;
11760  case 0: break;
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11763  kw_args = PyDict_Size(__pyx_kwds);
11764  switch (pos_args) {
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11766  if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_gravity)) != 0)) kw_args--;
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11768  CYTHON_FALLTHROUGH;
11769  case 1:
11770  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_rowptr)) != 0)) kw_args--;
11771  else {
11772  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 1); __PYX_ERR(0, 486, __pyx_L3_error)
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11774  CYTHON_FALLTHROUGH;
11775  case 2:
11776  if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_colind)) != 0)) kw_args--;
11777  else {
11778  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 2); __PYX_ERR(0, 486, __pyx_L3_error)
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11780  CYTHON_FALLTHROUGH;
11781  case 3:
11782  if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nSpace)) != 0)) kw_args--;
11783  else {
11784  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 3); __PYX_ERR(0, 486, __pyx_L3_error)
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11786  CYTHON_FALLTHROUGH;
11787  case 4:
11788  if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nElements_global)) != 0)) kw_args--;
11789  else {
11790  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 4); __PYX_ERR(0, 486, __pyx_L3_error)
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11792  CYTHON_FALLTHROUGH;
11793  case 5:
11794  if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nElementBoundaries_element)) != 0)) kw_args--;
11795  else {
11796  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 5); __PYX_ERR(0, 486, __pyx_L3_error)
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11798  CYTHON_FALLTHROUGH;
11799  case 6:
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11801  else {
11802  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 6); __PYX_ERR(0, 486, __pyx_L3_error)
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11804  CYTHON_FALLTHROUGH;
11805  case 7:
11806  if (likely((values[7] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementBarycentersArray)) != 0)) kw_args--;
11807  else {
11808  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 7); __PYX_ERR(0, 486, __pyx_L3_error)
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11810  CYTHON_FALLTHROUGH;
11811  case 8:
11812  if (likely((values[8] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nDOF_test_element)) != 0)) kw_args--;
11813  else {
11814  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 8); __PYX_ERR(0, 486, __pyx_L3_error)
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11816  CYTHON_FALLTHROUGH;
11817  case 9:
11818  if (likely((values[9] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_u)) != 0)) kw_args--;
11819  else {
11820  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 9); __PYX_ERR(0, 486, __pyx_L3_error)
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11822  CYTHON_FALLTHROUGH;
11823  case 10:
11824  if (likely((values[10] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_grad_u)) != 0)) kw_args--;
11825  else {
11826  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 10); __PYX_ERR(0, 486, __pyx_L3_error)
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11828  CYTHON_FALLTHROUGH;
11829  case 11:
11830  if (likely((values[11] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_grad_w)) != 0)) kw_args--;
11831  else {
11832  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 11); __PYX_ERR(0, 486, __pyx_L3_error)
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11834  CYTHON_FALLTHROUGH;
11835  case 12:
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11838  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 12); __PYX_ERR(0, 486, __pyx_L3_error)
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11840  CYTHON_FALLTHROUGH;
11841  case 13:
11842  if (likely((values[13] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_m)) != 0)) kw_args--;
11843  else {
11844  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 13); __PYX_ERR(0, 486, __pyx_L3_error)
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11846  CYTHON_FALLTHROUGH;
11847  case 14:
11848  if (likely((values[14] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_mt)) != 0)) kw_args--;
11849  else {
11850  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 14); __PYX_ERR(0, 486, __pyx_L3_error)
11851  }
11852  CYTHON_FALLTHROUGH;
11853  case 15:
11854  if (likely((values[15] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_r)) != 0)) kw_args--;
11855  else {
11856  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 15); __PYX_ERR(0, 486, __pyx_L3_error)
11857  }
11858  CYTHON_FALLTHROUGH;
11859  case 16:
11860  if (likely((values[16] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_kr)) != 0)) kw_args--;
11861  else {
11862  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 16); __PYX_ERR(0, 486, __pyx_L3_error)
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11864  CYTHON_FALLTHROUGH;
11865  case 17:
11866  if (likely((values[17] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_kr_up)) != 0)) kw_args--;
11867  else {
11868  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 17); __PYX_ERR(0, 486, __pyx_L3_error)
11869  }
11870  CYTHON_FALLTHROUGH;
11871  case 18:
11872  if (likely((values[18] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_flin)) != 0)) kw_args--;
11873  else {
11874  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 18); __PYX_ERR(0, 486, __pyx_L3_error)
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11876  CYTHON_FALLTHROUGH;
11877  case 19:
11878  if (likely((values[19] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_alin)) != 0)) kw_args--;
11879  else {
11880  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 19); __PYX_ERR(0, 486, __pyx_L3_error)
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11882  CYTHON_FALLTHROUGH;
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11884  if (likely((values[20] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementResidual)) != 0)) kw_args--;
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11886  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementResidual", 1, 21, 21, 20); __PYX_ERR(0, 486, __pyx_L3_error)
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11895  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
11896  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
11897  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
11898  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
11899  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
11900  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
11901  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
11902  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
11903  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
11904  values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
11905  values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
11906  values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
11907  values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
11908  values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
11909  values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
11910  values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
11911  values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
11912  values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
11913  values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
11914  values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
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11939  goto __pyx_L4_argument_unpacking_done;
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11966  /* function exit code */
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11978  int __pyx_v_nnz;
11979  int __pyx_v_eN;
11980  int __pyx_v_ii;
11981  int __pyx_v_I;
11982  int __pyx_v_i;
11983  int __pyx_v_ebN;
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11991  __Pyx_Buffer __pyx_pybuffer_a_up;
11992  __Pyx_LocalBuf_ND __pyx_pybuffernd_colind;
11993  __Pyx_Buffer __pyx_pybuffer_colind;
11994  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementBarycentersArray;
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11996  __Pyx_LocalBuf_ND __pyx_pybuffernd_elementNeighborsArray;
11997  __Pyx_Buffer __pyx_pybuffer_elementNeighborsArray;
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11999  __Pyx_Buffer __pyx_pybuffer_elementResidual;
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12001  __Pyx_Buffer __pyx_pybuffer_f_up;
12002  __Pyx_LocalBuf_ND __pyx_pybuffernd_gravity;
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12007  __Pyx_Buffer __pyx_pybuffer_q_detJ;
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12009  __Pyx_Buffer __pyx_pybuffer_q_flin;
12010  __Pyx_LocalBuf_ND __pyx_pybuffernd_q_grad_u;
12011  __Pyx_Buffer __pyx_pybuffer_q_grad_u;
12012  __Pyx_LocalBuf_ND __pyx_pybuffernd_q_grad_w;
12013  __Pyx_Buffer __pyx_pybuffer_q_grad_w;
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12015  __Pyx_Buffer __pyx_pybuffer_q_kr;
12016  __Pyx_LocalBuf_ND __pyx_pybuffernd_q_kr_up;
12017  __Pyx_Buffer __pyx_pybuffer_q_kr_up;
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12019  __Pyx_Buffer __pyx_pybuffer_q_m;
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12025  __Pyx_Buffer __pyx_pybuffer_q_u;
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12523  __PYX_ERR(0, 537, __pyx_L1_error)
12524  } else {__pyx_pybuffernd_f_up.diminfo[0].strides = __pyx_pybuffernd_f_up.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_f_up.diminfo[0].shape = __pyx_pybuffernd_f_up.rcbuffer->pybuffer.shape[0];
12525  }
12526  }
12527  __pyx_t_11 = 0;
12528  __pyx_v_f_up = ((PyArrayObject *)__pyx_t_2);
12529  __pyx_t_2 = 0;
12530 
12531  /* "subsurfaceTransportFunctions.pyx":539
12532  * cdef numpy.ndarray[DTYPE_t,ndim=1] f_up= numpy.zeros(nSpace,'d')
12533  * #for averaging/integration weights
12534  * cdef double nAvgWeight = 1.0/(nSpace+1.) # <<<<<<<<<<<<<<
12535  * cdef double weight=1.0,volFactor = 1.0
12536  * if nSpace == 2:
12537  */
12538  __pyx_t_12 = (__pyx_v_nSpace + 1.);
12539  if (unlikely(__pyx_t_12 == 0)) {
12540  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
12541  __PYX_ERR(0, 539, __pyx_L1_error)
12542  }
12543  __pyx_v_nAvgWeight = (1.0 / __pyx_t_12);
12544 
12545  /* "subsurfaceTransportFunctions.pyx":540
12546  * #for averaging/integration weights
12547  * cdef double nAvgWeight = 1.0/(nSpace+1.)
12548  * cdef double weight=1.0,volFactor = 1.0 # <<<<<<<<<<<<<<
12549  * if nSpace == 2:
12550  * volFactor = 0.5
12551  */
12552  __pyx_v_weight = 1.0;
12553  __pyx_v_volFactor = 1.0;
12554 
12555  /* "subsurfaceTransportFunctions.pyx":541
12556  * cdef double nAvgWeight = 1.0/(nSpace+1.)
12557  * cdef double weight=1.0,volFactor = 1.0
12558  * if nSpace == 2: # <<<<<<<<<<<<<<
12559  * volFactor = 0.5
12560  * if nSpace == 3:
12561  */
12562  __pyx_t_6 = ((__pyx_v_nSpace == 2) != 0);
12563  if (__pyx_t_6) {
12564 
12565  /* "subsurfaceTransportFunctions.pyx":542
12566  * cdef double weight=1.0,volFactor = 1.0
12567  * if nSpace == 2:
12568  * volFactor = 0.5 # <<<<<<<<<<<<<<
12569  * if nSpace == 3:
12570  * volFactor = 1.0/6.0
12571  */
12572  __pyx_v_volFactor = 0.5;
12573 
12574  /* "subsurfaceTransportFunctions.pyx":541
12575  * cdef double nAvgWeight = 1.0/(nSpace+1.)
12576  * cdef double weight=1.0,volFactor = 1.0
12577  * if nSpace == 2: # <<<<<<<<<<<<<<
12578  * volFactor = 0.5
12579  * if nSpace == 3:
12580  */
12581  }
12582 
12583  /* "subsurfaceTransportFunctions.pyx":543
12584  * if nSpace == 2:
12585  * volFactor = 0.5
12586  * if nSpace == 3: # <<<<<<<<<<<<<<
12587  * volFactor = 1.0/6.0
12588  * #
12589  */
12590  __pyx_t_6 = ((__pyx_v_nSpace == 3) != 0);
12591  if (__pyx_t_6) {
12592 
12593  /* "subsurfaceTransportFunctions.pyx":544
12594  * volFactor = 0.5
12595  * if nSpace == 3:
12596  * volFactor = 1.0/6.0 # <<<<<<<<<<<<<<
12597  * #
12598  * for eN in range(nElements_global):
12599  */
12600  __pyx_v_volFactor = (1.0 / 6.0);
12601 
12602  /* "subsurfaceTransportFunctions.pyx":543
12603  * if nSpace == 2:
12604  * volFactor = 0.5
12605  * if nSpace == 3: # <<<<<<<<<<<<<<
12606  * volFactor = 1.0/6.0
12607  * #
12608  */
12609  }
12610 
12611  /* "subsurfaceTransportFunctions.pyx":546
12612  * volFactor = 1.0/6.0
12613  * #
12614  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
12615  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
12616  * weight = nAvgWeight*volume
12617  */
12618  __pyx_t_8 = __pyx_v_nElements_global;
12619  __pyx_t_13 = __pyx_t_8;
12620  for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
12621  __pyx_v_eN = __pyx_t_14;
12622 
12623  /* "subsurfaceTransportFunctions.pyx":547
12624  * #
12625  * for eN in range(nElements_global):
12626  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation # <<<<<<<<<<<<<<
12627  * weight = nAvgWeight*volume
12628  *
12629  */
12630  __pyx_t_15 = __pyx_v_eN;
12631  __pyx_t_16 = 0;
12632  __pyx_t_17 = -1;
12633  if (__pyx_t_15 < 0) {
12634  __pyx_t_15 += __pyx_pybuffernd_q_detJ.diminfo[0].shape;
12635  if (unlikely(__pyx_t_15 < 0)) __pyx_t_17 = 0;
12636  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_q_detJ.diminfo[0].shape)) __pyx_t_17 = 0;
12637  if (__pyx_t_16 < 0) {
12638  __pyx_t_16 += __pyx_pybuffernd_q_detJ.diminfo[1].shape;
12639  if (unlikely(__pyx_t_16 < 0)) __pyx_t_17 = 1;
12640  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_q_detJ.diminfo[1].shape)) __pyx_t_17 = 1;
12641  if (unlikely(__pyx_t_17 != -1)) {
12642  __Pyx_RaiseBufferIndexError(__pyx_t_17);
12643  __PYX_ERR(0, 547, __pyx_L1_error)
12644  }
12645  __pyx_v_volume = (__pyx_v_volFactor * fabs((*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_detJ.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_q_detJ.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_q_detJ.diminfo[1].strides))));
12646 
12647  /* "subsurfaceTransportFunctions.pyx":548
12648  * for eN in range(nElements_global):
12649  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
12650  * weight = nAvgWeight*volume # <<<<<<<<<<<<<<
12651  *
12652  * for i in range(nDOF_test_element):
12653  */
12654  __pyx_v_weight = (__pyx_v_nAvgWeight * __pyx_v_volume);
12655 
12656  /* "subsurfaceTransportFunctions.pyx":550
12657  * weight = nAvgWeight*volume
12658  *
12659  * for i in range(nDOF_test_element): # <<<<<<<<<<<<<<
12660  * #nodal quadrature so diagonal
12661  * ##mass
12662  */
12663  __pyx_t_17 = __pyx_v_nDOF_test_element;
12664  __pyx_t_18 = __pyx_t_17;
12665  for (__pyx_t_19 = 0; __pyx_t_19 < __pyx_t_18; __pyx_t_19+=1) {
12666  __pyx_v_i = __pyx_t_19;
12667 
12668  /* "subsurfaceTransportFunctions.pyx":553
12669  * #nodal quadrature so diagonal
12670  * ##mass
12671  * elementResidual[eN,i] += weight*q_mt[eN,i] # <<<<<<<<<<<<<<
12672  * ##sources
12673  * elementResidual[eN,i] += weight*q_r[eN,i]
12674  */
12675  __pyx_t_20 = __pyx_v_eN;
12676  __pyx_t_21 = __pyx_v_i;
12677  __pyx_t_22 = -1;
12678  if (__pyx_t_20 < 0) {
12679  __pyx_t_20 += __pyx_pybuffernd_q_mt.diminfo[0].shape;
12680  if (unlikely(__pyx_t_20 < 0)) __pyx_t_22 = 0;
12681  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_q_mt.diminfo[0].shape)) __pyx_t_22 = 0;
12682  if (__pyx_t_21 < 0) {
12683  __pyx_t_21 += __pyx_pybuffernd_q_mt.diminfo[1].shape;
12684  if (unlikely(__pyx_t_21 < 0)) __pyx_t_22 = 1;
12685  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_q_mt.diminfo[1].shape)) __pyx_t_22 = 1;
12686  if (unlikely(__pyx_t_22 != -1)) {
12687  __Pyx_RaiseBufferIndexError(__pyx_t_22);
12688  __PYX_ERR(0, 553, __pyx_L1_error)
12689  }
12690  __pyx_t_23 = __pyx_v_eN;
12691  __pyx_t_24 = __pyx_v_i;
12692  __pyx_t_22 = -1;
12693  if (__pyx_t_23 < 0) {
12694  __pyx_t_23 += __pyx_pybuffernd_elementResidual.diminfo[0].shape;
12695  if (unlikely(__pyx_t_23 < 0)) __pyx_t_22 = 0;
12696  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_elementResidual.diminfo[0].shape)) __pyx_t_22 = 0;
12697  if (__pyx_t_24 < 0) {
12698  __pyx_t_24 += __pyx_pybuffernd_elementResidual.diminfo[1].shape;
12699  if (unlikely(__pyx_t_24 < 0)) __pyx_t_22 = 1;
12700  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_elementResidual.diminfo[1].shape)) __pyx_t_22 = 1;
12701  if (unlikely(__pyx_t_22 != -1)) {
12702  __Pyx_RaiseBufferIndexError(__pyx_t_22);
12703  __PYX_ERR(0, 553, __pyx_L1_error)
12704  }
12705  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_elementResidual.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_elementResidual.diminfo[0].strides, __pyx_t_24, __pyx_pybuffernd_elementResidual.diminfo[1].strides) += (__pyx_v_weight * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_mt.rcbuffer->pybuffer.buf, __pyx_t_20, __pyx_pybuffernd_q_mt.diminfo[0].strides, __pyx_t_21, __pyx_pybuffernd_q_mt.diminfo[1].strides)));
12706 
12707  /* "subsurfaceTransportFunctions.pyx":555
12708  * elementResidual[eN,i] += weight*q_mt[eN,i]
12709  * ##sources
12710  * elementResidual[eN,i] += weight*q_r[eN,i] # <<<<<<<<<<<<<<
12711  *
12712  * #have to actually compute loop over other nodes for stiffness terms
12713  */
12714  __pyx_t_25 = __pyx_v_eN;
12715  __pyx_t_26 = __pyx_v_i;
12716  __pyx_t_22 = -1;
12717  if (__pyx_t_25 < 0) {
12718  __pyx_t_25 += __pyx_pybuffernd_q_r.diminfo[0].shape;
12719  if (unlikely(__pyx_t_25 < 0)) __pyx_t_22 = 0;
12720  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_q_r.diminfo[0].shape)) __pyx_t_22 = 0;
12721  if (__pyx_t_26 < 0) {
12722  __pyx_t_26 += __pyx_pybuffernd_q_r.diminfo[1].shape;
12723  if (unlikely(__pyx_t_26 < 0)) __pyx_t_22 = 1;
12724  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_q_r.diminfo[1].shape)) __pyx_t_22 = 1;
12725  if (unlikely(__pyx_t_22 != -1)) {
12726  __Pyx_RaiseBufferIndexError(__pyx_t_22);
12727  __PYX_ERR(0, 555, __pyx_L1_error)
12728  }
12729  __pyx_t_27 = __pyx_v_eN;
12730  __pyx_t_28 = __pyx_v_i;
12731  __pyx_t_22 = -1;
12732  if (__pyx_t_27 < 0) {
12733  __pyx_t_27 += __pyx_pybuffernd_elementResidual.diminfo[0].shape;
12734  if (unlikely(__pyx_t_27 < 0)) __pyx_t_22 = 0;
12735  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_elementResidual.diminfo[0].shape)) __pyx_t_22 = 0;
12736  if (__pyx_t_28 < 0) {
12737  __pyx_t_28 += __pyx_pybuffernd_elementResidual.diminfo[1].shape;
12738  if (unlikely(__pyx_t_28 < 0)) __pyx_t_22 = 1;
12739  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_elementResidual.diminfo[1].shape)) __pyx_t_22 = 1;
12740  if (unlikely(__pyx_t_22 != -1)) {
12741  __Pyx_RaiseBufferIndexError(__pyx_t_22);
12742  __PYX_ERR(0, 555, __pyx_L1_error)
12743  }
12744  *__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_elementResidual.rcbuffer->pybuffer.buf, __pyx_t_27, __pyx_pybuffernd_elementResidual.diminfo[0].strides, __pyx_t_28, __pyx_pybuffernd_elementResidual.diminfo[1].strides) += (__pyx_v_weight * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_r.rcbuffer->pybuffer.buf, __pyx_t_25, __pyx_pybuffernd_q_r.diminfo[0].strides, __pyx_t_26, __pyx_pybuffernd_q_r.diminfo[1].strides)));
12745 
12746  /* "subsurfaceTransportFunctions.pyx":558
12747  *
12748  * #have to actually compute loop over other nodes for stiffness terms
12749  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_ # <<<<<<<<<<<<<<
12750  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12751  * for ii in range(nnz):
12752  */
12753  __pyx_t_22 = __pyx_v_nElementBoundaries_element;
12754  __pyx_t_29 = __pyx_t_22;
12755  for (__pyx_t_30 = 0; __pyx_t_30 < __pyx_t_29; __pyx_t_30+=1) {
12756  __pyx_v_ebN = __pyx_t_30;
12757 
12758  /* "subsurfaceTransportFunctions.pyx":560
12759  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_
12760  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12761  * for ii in range(nnz): # <<<<<<<<<<<<<<
12762  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12763  * for I in range(nSpace):
12764  */
12765  __pyx_t_31 = __pyx_v_nnz;
12766  __pyx_t_32 = __pyx_t_31;
12767  for (__pyx_t_33 = 0; __pyx_t_33 < __pyx_t_32; __pyx_t_33+=1) {
12768  __pyx_v_ii = __pyx_t_33;
12769 
12770  /* "subsurfaceTransportFunctions.pyx":561
12771  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
12772  * for ii in range(nnz):
12773  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
12774  * for I in range(nSpace):
12775  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
12776  */
12777  __pyx_t_34 = __pyx_v_eN;
12778  __pyx_t_35 = __pyx_v_ebN;
12779  __pyx_t_36 = __pyx_v_ii;
12780  __pyx_t_37 = -1;
12781  if (__pyx_t_34 < 0) {
12782  __pyx_t_34 += __pyx_pybuffernd_q_alin.diminfo[0].shape;
12783  if (unlikely(__pyx_t_34 < 0)) __pyx_t_37 = 0;
12784  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_37 = 0;
12785  if (__pyx_t_35 < 0) {
12786  __pyx_t_35 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
12787  if (unlikely(__pyx_t_35 < 0)) __pyx_t_37 = 1;
12788  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_37 = 1;
12789  if (__pyx_t_36 < 0) {
12790  __pyx_t_36 += __pyx_pybuffernd_q_alin.diminfo[2].shape;
12791  if (unlikely(__pyx_t_36 < 0)) __pyx_t_37 = 2;
12792  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_q_alin.diminfo[2].shape)) __pyx_t_37 = 2;
12793  if (unlikely(__pyx_t_37 != -1)) {
12794  __Pyx_RaiseBufferIndexError(__pyx_t_37);
12795  __PYX_ERR(0, 561, __pyx_L1_error)
12796  }
12797  __pyx_t_38 = __pyx_v_eN;
12798  __pyx_t_39 = __pyx_v_ebN;
12799  __pyx_t_37 = -1;
12800  if (__pyx_t_38 < 0) {
12801  __pyx_t_38 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
12802  if (unlikely(__pyx_t_38 < 0)) __pyx_t_37 = 0;
12803  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_37 = 0;
12804  if (__pyx_t_39 < 0) {
12805  __pyx_t_39 += __pyx_pybuffernd_q_kr_up.diminfo[1].shape;
12806  if (unlikely(__pyx_t_39 < 0)) __pyx_t_37 = 1;
12807  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_37 = 1;
12808  if (unlikely(__pyx_t_37 != -1)) {
12809  __Pyx_RaiseBufferIndexError(__pyx_t_37);
12810  __PYX_ERR(0, 561, __pyx_L1_error)
12811  }
12812  __pyx_t_40 = __pyx_v_ii;
12813  __pyx_t_37 = -1;
12814  if (__pyx_t_40 < 0) {
12815  __pyx_t_40 += __pyx_pybuffernd_a_up.diminfo[0].shape;
12816  if (unlikely(__pyx_t_40 < 0)) __pyx_t_37 = 0;
12817  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_a_up.diminfo[0].shape)) __pyx_t_37 = 0;
12818  if (unlikely(__pyx_t_37 != -1)) {
12819  __Pyx_RaiseBufferIndexError(__pyx_t_37);
12820  __PYX_ERR(0, 561, __pyx_L1_error)
12821  }
12822  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_up.rcbuffer->pybuffer.buf, __pyx_t_40, __pyx_pybuffernd_a_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_alin.rcbuffer->pybuffer.buf, __pyx_t_34, __pyx_pybuffernd_q_alin.diminfo[0].strides, __pyx_t_35, __pyx_pybuffernd_q_alin.diminfo[1].strides, __pyx_t_36, __pyx_pybuffernd_q_alin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_39, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
12823  }
12824 
12825  /* "subsurfaceTransportFunctions.pyx":562
12826  * for ii in range(nnz):
12827  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12828  * for I in range(nSpace): # <<<<<<<<<<<<<<
12829  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
12830  * #
12831  */
12832  __pyx_t_31 = __pyx_v_nSpace;
12833  __pyx_t_32 = __pyx_t_31;
12834  for (__pyx_t_33 = 0; __pyx_t_33 < __pyx_t_32; __pyx_t_33+=1) {
12835  __pyx_v_I = __pyx_t_33;
12836 
12837  /* "subsurfaceTransportFunctions.pyx":563
12838  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
12839  * for I in range(nSpace):
12840  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
12841  * #
12842  * #accumulate advection and stiffness contributions
12843  */
12844  __pyx_t_41 = __pyx_v_eN;
12845  __pyx_t_42 = __pyx_v_ebN;
12846  __pyx_t_43 = __pyx_v_I;
12847  __pyx_t_37 = -1;
12848  if (__pyx_t_41 < 0) {
12849  __pyx_t_41 += __pyx_pybuffernd_q_flin.diminfo[0].shape;
12850  if (unlikely(__pyx_t_41 < 0)) __pyx_t_37 = 0;
12851  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_flin.diminfo[0].shape)) __pyx_t_37 = 0;
12852  if (__pyx_t_42 < 0) {
12853  __pyx_t_42 += __pyx_pybuffernd_q_flin.diminfo[1].shape;
12854  if (unlikely(__pyx_t_42 < 0)) __pyx_t_37 = 1;
12855  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_q_flin.diminfo[1].shape)) __pyx_t_37 = 1;
12856  if (__pyx_t_43 < 0) {
12857  __pyx_t_43 += __pyx_pybuffernd_q_flin.diminfo[2].shape;
12858  if (unlikely(__pyx_t_43 < 0)) __pyx_t_37 = 2;
12859  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_q_flin.diminfo[2].shape)) __pyx_t_37 = 2;
12860  if (unlikely(__pyx_t_37 != -1)) {
12861  __Pyx_RaiseBufferIndexError(__pyx_t_37);
12862  __PYX_ERR(0, 563, __pyx_L1_error)
12863  }
12864  __pyx_t_44 = __pyx_v_eN;
12865  __pyx_t_45 = __pyx_v_ebN;
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12894  * #accumulate advection and stiffness contributions
12895  * for I in range(nSpace): # <<<<<<<<<<<<<<
12896  * elementResidual[eN,i] -= weight*f_up[I]*q_grad_w[eN,ebN,i,I]
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12905  * #accumulate advection and stiffness contributions
12906  * for I in range(nSpace):
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12908  * for ii in range(rowptr[I],rowptr[I+1]):
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12996  * elementResidual[eN,i] -= weight*f_up[I]*q_grad_w[eN,ebN,i,I]
12997  * for ii in range(rowptr[I],rowptr[I+1]):
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12999  * #I
13000  * #j
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13090  * #eN for upwind
13091  *
13092  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
13093  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
13094  * numpy.ndarray[ITYPE_t,ndim=1] colind,
13095  */
13096 
13097  /* function exit code */
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13137  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_elementNeighborsArray.rcbuffer->pybuffer);
13138  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_elementResidual.rcbuffer->pybuffer);
13139  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_f_up.rcbuffer->pybuffer);
13140  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_gravity.rcbuffer->pybuffer);
13141  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_alin.rcbuffer->pybuffer);
13142  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_detJ.rcbuffer->pybuffer);
13143  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_flin.rcbuffer->pybuffer);
13144  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_grad_u.rcbuffer->pybuffer);
13145  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_grad_w.rcbuffer->pybuffer);
13146  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_kr.rcbuffer->pybuffer);
13147  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer);
13148  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_m.rcbuffer->pybuffer);
13149  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_mt.rcbuffer->pybuffer);
13150  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_r.rcbuffer->pybuffer);
13151  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_q_u.rcbuffer->pybuffer);
13152  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_rowptr.rcbuffer->pybuffer);
13153  __pyx_L2:;
13154  __Pyx_XDECREF(__pyx_v_q);
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13161 
13162 /* "subsurfaceTransportFunctions.pyx":574
13163  * #i
13164  * #eN
13165  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
13166  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
13167  * numpy.ndarray[ITYPE_t,ndim=1] colind,
13168  */
13169 
13170 /* Python wrapper */
13171 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
13172 static char __pyx_doc_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian[] = "\n residual routine for NCP1 approximation for conservative head formulation of Richards equation \n\n Approximation:\n uses nodal quadrature where the nodes are face barycenters\n uses harmonic average for intrinsic permeability/ hydraulic conductivity\n upwinds relative permeability based on element averages\n applies dirichlet boundary conditions strongly but keeps dofs in system\n\n TODO:\n everything\n \n ";
13173 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian = {"RE_NCP1_getElementJacobian", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian, METH_VARARGS|METH_KEYWORDS, __pyx_doc_28subsurfaceTransportFunctions_34RE_NCP1_getElementJacobian};
13174 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
13175  CYTHON_UNUSED PyArrayObject *__pyx_v_gravity = 0;
13176  PyArrayObject *__pyx_v_rowptr = 0;
13177  PyArrayObject *__pyx_v_colind = 0;
13178  int __pyx_v_nSpace;
13179  int __pyx_v_nElements_global;
13180  int __pyx_v_nElementBoundaries_element;
13181  CYTHON_UNUSED PyArrayObject *__pyx_v_elementNeighborsArray = 0;
13182  CYTHON_UNUSED PyArrayObject *__pyx_v_elementBarycentersArray = 0;
13183  int __pyx_v_nDOF_test_element;
13184  int __pyx_v_nDOF_trial_element;
13185  PyArrayObject *__pyx_v_q_u = 0;
13186  CYTHON_UNUSED PyArrayObject *__pyx_v_q_grad_u = 0;
13187  PyArrayObject *__pyx_v_q_grad_w = 0;
13188  PyArrayObject *__pyx_v_q_grad_v = 0;
13189  PyArrayObject *__pyx_v_q_detJ = 0;
13190  PyArrayObject *__pyx_v_q_m = 0;
13191  CYTHON_UNUSED PyArrayObject *__pyx_v_q_dm = 0;
13192  PyArrayObject *__pyx_v_q_mt = 0;
13193  PyArrayObject *__pyx_v_q_dmt = 0;
13194  PyArrayObject *__pyx_v_q_r = 0;
13195  PyArrayObject *__pyx_v_q_kr = 0;
13196  CYTHON_UNUSED PyArrayObject *__pyx_v_q_dkr = 0;
13197  PyArrayObject *__pyx_v_q_kr_up = 0;
13198  PyArrayObject *__pyx_v_q_flin = 0;
13199  PyArrayObject *__pyx_v_q_alin = 0;
13200  PyArrayObject *__pyx_v_elementJacobian = 0;
13201  PyObject *__pyx_r = 0;
13202  __Pyx_RefNannyDeclarations
13203  __Pyx_RefNannySetupContext("RE_NCP1_getElementJacobian (wrapper)", 0);
13204  {
13205  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_gravity,&__pyx_n_s_rowptr,&__pyx_n_s_colind,&__pyx_n_s_nSpace,&__pyx_n_s_nElements_global,&__pyx_n_s_nElementBoundaries_element,&__pyx_n_s_elementNeighborsArray,&__pyx_n_s_elementBarycentersArray,&__pyx_n_s_nDOF_test_element,&__pyx_n_s_nDOF_trial_element,&__pyx_n_s_q_u,&__pyx_n_s_q_grad_u,&__pyx_n_s_q_grad_w,&__pyx_n_s_q_grad_v,&__pyx_n_s_q_detJ,&__pyx_n_s_q_m,&__pyx_n_s_q_dm,&__pyx_n_s_q_mt,&__pyx_n_s_q_dmt,&__pyx_n_s_q_r,&__pyx_n_s_q_kr,&__pyx_n_s_q_dkr,&__pyx_n_s_q_kr_up,&__pyx_n_s_q_flin,&__pyx_n_s_q_alin,&__pyx_n_s_elementJacobian,0};
13206  PyObject* values[26] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
13207  if (unlikely(__pyx_kwds)) {
13208  Py_ssize_t kw_args;
13209  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
13210  switch (pos_args) {
13211  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
13212  CYTHON_FALLTHROUGH;
13213  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
13214  CYTHON_FALLTHROUGH;
13215  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
13216  CYTHON_FALLTHROUGH;
13217  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
13218  CYTHON_FALLTHROUGH;
13219  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
13220  CYTHON_FALLTHROUGH;
13221  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
13222  CYTHON_FALLTHROUGH;
13223  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
13224  CYTHON_FALLTHROUGH;
13225  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
13226  CYTHON_FALLTHROUGH;
13227  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
13228  CYTHON_FALLTHROUGH;
13229  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
13230  CYTHON_FALLTHROUGH;
13231  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
13232  CYTHON_FALLTHROUGH;
13233  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
13234  CYTHON_FALLTHROUGH;
13235  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
13236  CYTHON_FALLTHROUGH;
13237  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
13238  CYTHON_FALLTHROUGH;
13239  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
13240  CYTHON_FALLTHROUGH;
13241  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
13242  CYTHON_FALLTHROUGH;
13243  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
13244  CYTHON_FALLTHROUGH;
13245  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
13246  CYTHON_FALLTHROUGH;
13247  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
13248  CYTHON_FALLTHROUGH;
13249  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
13250  CYTHON_FALLTHROUGH;
13251  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
13252  CYTHON_FALLTHROUGH;
13253  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
13254  CYTHON_FALLTHROUGH;
13255  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
13256  CYTHON_FALLTHROUGH;
13257  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13258  CYTHON_FALLTHROUGH;
13259  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13260  CYTHON_FALLTHROUGH;
13261  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13262  CYTHON_FALLTHROUGH;
13263  case 0: break;
13264  default: goto __pyx_L5_argtuple_error;
13265  }
13266  kw_args = PyDict_Size(__pyx_kwds);
13267  switch (pos_args) {
13268  case 0:
13269  if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_gravity)) != 0)) kw_args--;
13270  else goto __pyx_L5_argtuple_error;
13271  CYTHON_FALLTHROUGH;
13272  case 1:
13273  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_rowptr)) != 0)) kw_args--;
13274  else {
13275  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 1); __PYX_ERR(0, 574, __pyx_L3_error)
13276  }
13277  CYTHON_FALLTHROUGH;
13278  case 2:
13279  if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_colind)) != 0)) kw_args--;
13280  else {
13281  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 2); __PYX_ERR(0, 574, __pyx_L3_error)
13282  }
13283  CYTHON_FALLTHROUGH;
13284  case 3:
13285  if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nSpace)) != 0)) kw_args--;
13286  else {
13287  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 3); __PYX_ERR(0, 574, __pyx_L3_error)
13288  }
13289  CYTHON_FALLTHROUGH;
13290  case 4:
13291  if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nElements_global)) != 0)) kw_args--;
13292  else {
13293  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 4); __PYX_ERR(0, 574, __pyx_L3_error)
13294  }
13295  CYTHON_FALLTHROUGH;
13296  case 5:
13297  if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nElementBoundaries_element)) != 0)) kw_args--;
13298  else {
13299  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 5); __PYX_ERR(0, 574, __pyx_L3_error)
13300  }
13301  CYTHON_FALLTHROUGH;
13302  case 6:
13303  if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementNeighborsArray)) != 0)) kw_args--;
13304  else {
13305  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 6); __PYX_ERR(0, 574, __pyx_L3_error)
13306  }
13307  CYTHON_FALLTHROUGH;
13308  case 7:
13309  if (likely((values[7] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementBarycentersArray)) != 0)) kw_args--;
13310  else {
13311  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 7); __PYX_ERR(0, 574, __pyx_L3_error)
13312  }
13313  CYTHON_FALLTHROUGH;
13314  case 8:
13315  if (likely((values[8] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nDOF_test_element)) != 0)) kw_args--;
13316  else {
13317  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 8); __PYX_ERR(0, 574, __pyx_L3_error)
13318  }
13319  CYTHON_FALLTHROUGH;
13320  case 9:
13321  if (likely((values[9] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_nDOF_trial_element)) != 0)) kw_args--;
13322  else {
13323  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 9); __PYX_ERR(0, 574, __pyx_L3_error)
13324  }
13325  CYTHON_FALLTHROUGH;
13326  case 10:
13327  if (likely((values[10] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_u)) != 0)) kw_args--;
13328  else {
13329  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 10); __PYX_ERR(0, 574, __pyx_L3_error)
13330  }
13331  CYTHON_FALLTHROUGH;
13332  case 11:
13333  if (likely((values[11] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_grad_u)) != 0)) kw_args--;
13334  else {
13335  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 11); __PYX_ERR(0, 574, __pyx_L3_error)
13336  }
13337  CYTHON_FALLTHROUGH;
13338  case 12:
13339  if (likely((values[12] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_grad_w)) != 0)) kw_args--;
13340  else {
13341  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 12); __PYX_ERR(0, 574, __pyx_L3_error)
13342  }
13343  CYTHON_FALLTHROUGH;
13344  case 13:
13345  if (likely((values[13] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_grad_v)) != 0)) kw_args--;
13346  else {
13347  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 13); __PYX_ERR(0, 574, __pyx_L3_error)
13348  }
13349  CYTHON_FALLTHROUGH;
13350  case 14:
13351  if (likely((values[14] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_detJ)) != 0)) kw_args--;
13352  else {
13353  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 14); __PYX_ERR(0, 574, __pyx_L3_error)
13354  }
13355  CYTHON_FALLTHROUGH;
13356  case 15:
13357  if (likely((values[15] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_m)) != 0)) kw_args--;
13358  else {
13359  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 15); __PYX_ERR(0, 574, __pyx_L3_error)
13360  }
13361  CYTHON_FALLTHROUGH;
13362  case 16:
13363  if (likely((values[16] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_dm)) != 0)) kw_args--;
13364  else {
13365  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 16); __PYX_ERR(0, 574, __pyx_L3_error)
13366  }
13367  CYTHON_FALLTHROUGH;
13368  case 17:
13369  if (likely((values[17] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_mt)) != 0)) kw_args--;
13370  else {
13371  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 17); __PYX_ERR(0, 574, __pyx_L3_error)
13372  }
13373  CYTHON_FALLTHROUGH;
13374  case 18:
13375  if (likely((values[18] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_dmt)) != 0)) kw_args--;
13376  else {
13377  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 18); __PYX_ERR(0, 574, __pyx_L3_error)
13378  }
13379  CYTHON_FALLTHROUGH;
13380  case 19:
13381  if (likely((values[19] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_r)) != 0)) kw_args--;
13382  else {
13383  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 19); __PYX_ERR(0, 574, __pyx_L3_error)
13384  }
13385  CYTHON_FALLTHROUGH;
13386  case 20:
13387  if (likely((values[20] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_kr)) != 0)) kw_args--;
13388  else {
13389  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 20); __PYX_ERR(0, 574, __pyx_L3_error)
13390  }
13391  CYTHON_FALLTHROUGH;
13392  case 21:
13393  if (likely((values[21] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_dkr)) != 0)) kw_args--;
13394  else {
13395  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 21); __PYX_ERR(0, 574, __pyx_L3_error)
13396  }
13397  CYTHON_FALLTHROUGH;
13398  case 22:
13399  if (likely((values[22] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_kr_up)) != 0)) kw_args--;
13400  else {
13401  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 22); __PYX_ERR(0, 574, __pyx_L3_error)
13402  }
13403  CYTHON_FALLTHROUGH;
13404  case 23:
13405  if (likely((values[23] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_flin)) != 0)) kw_args--;
13406  else {
13407  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 23); __PYX_ERR(0, 574, __pyx_L3_error)
13408  }
13409  CYTHON_FALLTHROUGH;
13410  case 24:
13411  if (likely((values[24] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_q_alin)) != 0)) kw_args--;
13412  else {
13413  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 24); __PYX_ERR(0, 574, __pyx_L3_error)
13414  }
13415  CYTHON_FALLTHROUGH;
13416  case 25:
13417  if (likely((values[25] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_elementJacobian)) != 0)) kw_args--;
13418  else {
13419  __Pyx_RaiseArgtupleInvalid("RE_NCP1_getElementJacobian", 1, 26, 26, 25); __PYX_ERR(0, 574, __pyx_L3_error)
13420  }
13421  }
13422  if (unlikely(kw_args > 0)) {
13423  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "RE_NCP1_getElementJacobian") < 0)) __PYX_ERR(0, 574, __pyx_L3_error)
13424  }
13425  } else if (PyTuple_GET_SIZE(__pyx_args) != 26) {
13426  goto __pyx_L5_argtuple_error;
13427  } else {
13428  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
13429  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
13430  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
13431  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
13432  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
13433  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
13434  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
13435  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
13436  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
13437  values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
13438  values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
13439  values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
13440  values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
13441  values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
13442  values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
13443  values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
13444  values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
13445  values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
13446  values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
13447  values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
13448  values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
13449  values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
13450  values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
13451  values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
13452  values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
13453  values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
13454  }
13455  __pyx_v_gravity = ((PyArrayObject *)values[0]);
13456  __pyx_v_rowptr = ((PyArrayObject *)values[1]);
13457  __pyx_v_colind = ((PyArrayObject *)values[2]);
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13850 
13851  /* "subsurfaceTransportFunctions.pyx":620
13852  *
13853  * """
13854  * cdef int upwindFlag = 1 # <<<<<<<<<<<<<<
13855  * cdef int picard = 1
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14184  * if nSpace == 2: # <<<<<<<<<<<<<<
14185  * volFactor = 0.5
14186  * if nSpace == 3:
14187  */
14188  }
14189 
14190  /* "subsurfaceTransportFunctions.pyx":638
14191  * if nSpace == 2:
14192  * volFactor = 0.5
14193  * if nSpace == 3: # <<<<<<<<<<<<<<
14194  * volFactor = 1.0/6.0
14195  * #
14196  */
14197  __pyx_t_6 = ((__pyx_v_nSpace == 3) != 0);
14198  if (__pyx_t_6) {
14199 
14200  /* "subsurfaceTransportFunctions.pyx":639
14201  * volFactor = 0.5
14202  * if nSpace == 3:
14203  * volFactor = 1.0/6.0 # <<<<<<<<<<<<<<
14204  * #
14205  * for eN in range(nElements_global):
14206  */
14207  __pyx_v_volFactor = (1.0 / 6.0);
14208 
14209  /* "subsurfaceTransportFunctions.pyx":638
14210  * if nSpace == 2:
14211  * volFactor = 0.5
14212  * if nSpace == 3: # <<<<<<<<<<<<<<
14213  * volFactor = 1.0/6.0
14214  * #
14215  */
14216  }
14217 
14218  /* "subsurfaceTransportFunctions.pyx":641
14219  * volFactor = 1.0/6.0
14220  * #
14221  * for eN in range(nElements_global): # <<<<<<<<<<<<<<
14222  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
14223  * weight = nAvgWeight*volume
14224  */
14225  __pyx_t_8 = __pyx_v_nElements_global;
14226  __pyx_t_13 = __pyx_t_8;
14227  for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
14228  __pyx_v_eN = __pyx_t_14;
14229 
14230  /* "subsurfaceTransportFunctions.pyx":642
14231  * #
14232  * for eN in range(nElements_global):
14233  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation # <<<<<<<<<<<<<<
14234  * weight = nAvgWeight*volume
14235  *
14236  */
14237  __pyx_t_15 = __pyx_v_eN;
14238  __pyx_t_16 = 0;
14239  __pyx_t_17 = -1;
14240  if (__pyx_t_15 < 0) {
14241  __pyx_t_15 += __pyx_pybuffernd_q_detJ.diminfo[0].shape;
14242  if (unlikely(__pyx_t_15 < 0)) __pyx_t_17 = 0;
14243  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_q_detJ.diminfo[0].shape)) __pyx_t_17 = 0;
14244  if (__pyx_t_16 < 0) {
14245  __pyx_t_16 += __pyx_pybuffernd_q_detJ.diminfo[1].shape;
14246  if (unlikely(__pyx_t_16 < 0)) __pyx_t_17 = 1;
14247  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_q_detJ.diminfo[1].shape)) __pyx_t_17 = 1;
14248  if (unlikely(__pyx_t_17 != -1)) {
14249  __Pyx_RaiseBufferIndexError(__pyx_t_17);
14250  __PYX_ERR(0, 642, __pyx_L1_error)
14251  }
14252  __pyx_v_volume = (__pyx_v_volFactor * fabs((*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_detJ.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_q_detJ.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_q_detJ.diminfo[1].strides))));
14253 
14254  /* "subsurfaceTransportFunctions.pyx":643
14255  * for eN in range(nElements_global):
14256  * volume = volFactor*fabs(q_detJ[eN,0]) #affine transformation
14257  * weight = nAvgWeight*volume # <<<<<<<<<<<<<<
14258  *
14259  *
14260  */
14261  __pyx_v_weight = (__pyx_v_nAvgWeight * __pyx_v_volume);
14262 
14263  /* "subsurfaceTransportFunctions.pyx":646
14264  *
14265  *
14266  * for i in range(nDOF_test_element): # <<<<<<<<<<<<<<
14267  * #nodal quadrature so diagonal
14268  * ##mass
14269  */
14270  __pyx_t_17 = __pyx_v_nDOF_test_element;
14271  __pyx_t_18 = __pyx_t_17;
14272  for (__pyx_t_19 = 0; __pyx_t_19 < __pyx_t_18; __pyx_t_19+=1) {
14273  __pyx_v_i = __pyx_t_19;
14274 
14275  /* "subsurfaceTransportFunctions.pyx":650
14276  * ##mass
14277  * #elementResidual[eN,i] += weight*q_m[eN,i]
14278  * elementJacobian[eN,i,i] += weight*q_dmt[eN,i] # <<<<<<<<<<<<<<
14279  *
14280  * #have to actually compute loop over other nodes for stiffness terms
14281  */
14282  __pyx_t_20 = __pyx_v_eN;
14283  __pyx_t_21 = __pyx_v_i;
14284  __pyx_t_22 = -1;
14285  if (__pyx_t_20 < 0) {
14286  __pyx_t_20 += __pyx_pybuffernd_q_dmt.diminfo[0].shape;
14287  if (unlikely(__pyx_t_20 < 0)) __pyx_t_22 = 0;
14288  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_q_dmt.diminfo[0].shape)) __pyx_t_22 = 0;
14289  if (__pyx_t_21 < 0) {
14290  __pyx_t_21 += __pyx_pybuffernd_q_dmt.diminfo[1].shape;
14291  if (unlikely(__pyx_t_21 < 0)) __pyx_t_22 = 1;
14292  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_q_dmt.diminfo[1].shape)) __pyx_t_22 = 1;
14293  if (unlikely(__pyx_t_22 != -1)) {
14294  __Pyx_RaiseBufferIndexError(__pyx_t_22);
14295  __PYX_ERR(0, 650, __pyx_L1_error)
14296  }
14297  __pyx_t_23 = __pyx_v_eN;
14298  __pyx_t_24 = __pyx_v_i;
14299  __pyx_t_25 = __pyx_v_i;
14300  __pyx_t_22 = -1;
14301  if (__pyx_t_23 < 0) {
14302  __pyx_t_23 += __pyx_pybuffernd_elementJacobian.diminfo[0].shape;
14303  if (unlikely(__pyx_t_23 < 0)) __pyx_t_22 = 0;
14304  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_elementJacobian.diminfo[0].shape)) __pyx_t_22 = 0;
14305  if (__pyx_t_24 < 0) {
14306  __pyx_t_24 += __pyx_pybuffernd_elementJacobian.diminfo[1].shape;
14307  if (unlikely(__pyx_t_24 < 0)) __pyx_t_22 = 1;
14308  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_elementJacobian.diminfo[1].shape)) __pyx_t_22 = 1;
14309  if (__pyx_t_25 < 0) {
14310  __pyx_t_25 += __pyx_pybuffernd_elementJacobian.diminfo[2].shape;
14311  if (unlikely(__pyx_t_25 < 0)) __pyx_t_22 = 2;
14312  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_elementJacobian.diminfo[2].shape)) __pyx_t_22 = 2;
14313  if (unlikely(__pyx_t_22 != -1)) {
14314  __Pyx_RaiseBufferIndexError(__pyx_t_22);
14315  __PYX_ERR(0, 650, __pyx_L1_error)
14316  }
14317  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_elementJacobian.rcbuffer->pybuffer.buf, __pyx_t_23, __pyx_pybuffernd_elementJacobian.diminfo[0].strides, __pyx_t_24, __pyx_pybuffernd_elementJacobian.diminfo[1].strides, __pyx_t_25, __pyx_pybuffernd_elementJacobian.diminfo[2].strides) += (__pyx_v_weight * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_dmt.rcbuffer->pybuffer.buf, __pyx_t_20, __pyx_pybuffernd_q_dmt.diminfo[0].strides, __pyx_t_21, __pyx_pybuffernd_q_dmt.diminfo[1].strides)));
14318 
14319  /* "subsurfaceTransportFunctions.pyx":653
14320  *
14321  * #have to actually compute loop over other nodes for stiffness terms
14322  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_ # <<<<<<<<<<<<<<
14323  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
14324  * for ii in range(nnz):
14325  */
14326  __pyx_t_22 = __pyx_v_nElementBoundaries_element;
14327  __pyx_t_26 = __pyx_t_22;
14328  for (__pyx_t_27 = 0; __pyx_t_27 < __pyx_t_26; __pyx_t_27+=1) {
14329  __pyx_v_ebN = __pyx_t_27;
14330 
14331  /* "subsurfaceTransportFunctions.pyx":655
14332  * for ebN in range(nElementBoundaries_element): #same as nDOF_trial , nElementBoundaries_
14333  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
14334  * for ii in range(nnz): # <<<<<<<<<<<<<<
14335  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
14336  * for I in range(nSpace):
14337  */
14338  __pyx_t_28 = __pyx_v_nnz;
14339  __pyx_t_29 = __pyx_t_28;
14340  for (__pyx_t_30 = 0; __pyx_t_30 < __pyx_t_29; __pyx_t_30+=1) {
14341  __pyx_v_ii = __pyx_t_30;
14342 
14343  /* "subsurfaceTransportFunctions.pyx":656
14344  * #assumes linear parts of f and a and upwind k_r have already been evaluated correctly for interface
14345  * for ii in range(nnz):
14346  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
14347  * for I in range(nSpace):
14348  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
14349  */
14350  __pyx_t_31 = __pyx_v_eN;
14351  __pyx_t_32 = __pyx_v_ebN;
14352  __pyx_t_33 = __pyx_v_ii;
14353  __pyx_t_34 = -1;
14354  if (__pyx_t_31 < 0) {
14355  __pyx_t_31 += __pyx_pybuffernd_q_alin.diminfo[0].shape;
14356  if (unlikely(__pyx_t_31 < 0)) __pyx_t_34 = 0;
14357  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_q_alin.diminfo[0].shape)) __pyx_t_34 = 0;
14358  if (__pyx_t_32 < 0) {
14359  __pyx_t_32 += __pyx_pybuffernd_q_alin.diminfo[1].shape;
14360  if (unlikely(__pyx_t_32 < 0)) __pyx_t_34 = 1;
14361  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_q_alin.diminfo[1].shape)) __pyx_t_34 = 1;
14362  if (__pyx_t_33 < 0) {
14363  __pyx_t_33 += __pyx_pybuffernd_q_alin.diminfo[2].shape;
14364  if (unlikely(__pyx_t_33 < 0)) __pyx_t_34 = 2;
14365  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_q_alin.diminfo[2].shape)) __pyx_t_34 = 2;
14366  if (unlikely(__pyx_t_34 != -1)) {
14367  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14368  __PYX_ERR(0, 656, __pyx_L1_error)
14369  }
14370  __pyx_t_35 = __pyx_v_eN;
14371  __pyx_t_36 = __pyx_v_ebN;
14372  __pyx_t_34 = -1;
14373  if (__pyx_t_35 < 0) {
14374  __pyx_t_35 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
14375  if (unlikely(__pyx_t_35 < 0)) __pyx_t_34 = 0;
14376  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_34 = 0;
14377  if (__pyx_t_36 < 0) {
14378  __pyx_t_36 += __pyx_pybuffernd_q_kr_up.diminfo[1].shape;
14379  if (unlikely(__pyx_t_36 < 0)) __pyx_t_34 = 1;
14380  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_34 = 1;
14381  if (unlikely(__pyx_t_34 != -1)) {
14382  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14383  __PYX_ERR(0, 656, __pyx_L1_error)
14384  }
14385  __pyx_t_37 = __pyx_v_ii;
14386  __pyx_t_34 = -1;
14387  if (__pyx_t_37 < 0) {
14388  __pyx_t_37 += __pyx_pybuffernd_a_up.diminfo[0].shape;
14389  if (unlikely(__pyx_t_37 < 0)) __pyx_t_34 = 0;
14390  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_a_up.diminfo[0].shape)) __pyx_t_34 = 0;
14391  if (unlikely(__pyx_t_34 != -1)) {
14392  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14393  __PYX_ERR(0, 656, __pyx_L1_error)
14394  }
14395  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_a_up.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_a_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_alin.rcbuffer->pybuffer.buf, __pyx_t_31, __pyx_pybuffernd_q_alin.diminfo[0].strides, __pyx_t_32, __pyx_pybuffernd_q_alin.diminfo[1].strides, __pyx_t_33, __pyx_pybuffernd_q_alin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_35, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_36, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
14396  }
14397 
14398  /* "subsurfaceTransportFunctions.pyx":657
14399  * for ii in range(nnz):
14400  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
14401  * for I in range(nSpace): # <<<<<<<<<<<<<<
14402  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN]
14403  * #
14404  */
14405  __pyx_t_28 = __pyx_v_nSpace;
14406  __pyx_t_29 = __pyx_t_28;
14407  for (__pyx_t_30 = 0; __pyx_t_30 < __pyx_t_29; __pyx_t_30+=1) {
14408  __pyx_v_I = __pyx_t_30;
14409 
14410  /* "subsurfaceTransportFunctions.pyx":658
14411  * a_up[ii] = q_alin[eN,ebN,ii]*q_kr_up[eN,ebN]
14412  * for I in range(nSpace):
14413  * f_up[I] = q_flin[eN,ebN,I]*q_kr_up[eN,ebN] # <<<<<<<<<<<<<<
14414  * #
14415  *
14416  */
14417  __pyx_t_38 = __pyx_v_eN;
14418  __pyx_t_39 = __pyx_v_ebN;
14419  __pyx_t_40 = __pyx_v_I;
14420  __pyx_t_34 = -1;
14421  if (__pyx_t_38 < 0) {
14422  __pyx_t_38 += __pyx_pybuffernd_q_flin.diminfo[0].shape;
14423  if (unlikely(__pyx_t_38 < 0)) __pyx_t_34 = 0;
14424  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_q_flin.diminfo[0].shape)) __pyx_t_34 = 0;
14425  if (__pyx_t_39 < 0) {
14426  __pyx_t_39 += __pyx_pybuffernd_q_flin.diminfo[1].shape;
14427  if (unlikely(__pyx_t_39 < 0)) __pyx_t_34 = 1;
14428  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_q_flin.diminfo[1].shape)) __pyx_t_34 = 1;
14429  if (__pyx_t_40 < 0) {
14430  __pyx_t_40 += __pyx_pybuffernd_q_flin.diminfo[2].shape;
14431  if (unlikely(__pyx_t_40 < 0)) __pyx_t_34 = 2;
14432  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_q_flin.diminfo[2].shape)) __pyx_t_34 = 2;
14433  if (unlikely(__pyx_t_34 != -1)) {
14434  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14435  __PYX_ERR(0, 658, __pyx_L1_error)
14436  }
14437  __pyx_t_41 = __pyx_v_eN;
14438  __pyx_t_42 = __pyx_v_ebN;
14439  __pyx_t_34 = -1;
14440  if (__pyx_t_41 < 0) {
14441  __pyx_t_41 += __pyx_pybuffernd_q_kr_up.diminfo[0].shape;
14442  if (unlikely(__pyx_t_41 < 0)) __pyx_t_34 = 0;
14443  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_q_kr_up.diminfo[0].shape)) __pyx_t_34 = 0;
14444  if (__pyx_t_42 < 0) {
14445  __pyx_t_42 += __pyx_pybuffernd_q_kr_up.diminfo[1].shape;
14446  if (unlikely(__pyx_t_42 < 0)) __pyx_t_34 = 1;
14447  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_q_kr_up.diminfo[1].shape)) __pyx_t_34 = 1;
14448  if (unlikely(__pyx_t_34 != -1)) {
14449  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14450  __PYX_ERR(0, 658, __pyx_L1_error)
14451  }
14452  __pyx_t_43 = __pyx_v_I;
14453  __pyx_t_34 = -1;
14454  if (__pyx_t_43 < 0) {
14455  __pyx_t_43 += __pyx_pybuffernd_f_up.diminfo[0].shape;
14456  if (unlikely(__pyx_t_43 < 0)) __pyx_t_34 = 0;
14457  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_f_up.diminfo[0].shape)) __pyx_t_34 = 0;
14458  if (unlikely(__pyx_t_34 != -1)) {
14459  __Pyx_RaiseBufferIndexError(__pyx_t_34);
14460  __PYX_ERR(0, 658, __pyx_L1_error)
14461  }
14462  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_f_up.rcbuffer->pybuffer.buf, __pyx_t_43, __pyx_pybuffernd_f_up.diminfo[0].strides) = ((*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_flin.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_q_flin.diminfo[0].strides, __pyx_t_39, __pyx_pybuffernd_q_flin.diminfo[1].strides, __pyx_t_40, __pyx_pybuffernd_q_flin.diminfo[2].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_q_kr_up.rcbuffer->pybuffer.buf, __pyx_t_41, __pyx_pybuffernd_q_kr_up.diminfo[0].strides, __pyx_t_42, __pyx_pybuffernd_q_kr_up.diminfo[1].strides)));
14463  }
14464 
14465  /* "subsurfaceTransportFunctions.pyx":662
14466  *
14467  * #Picard part first
14468  * for j in range(nDOF_trial_element): # <<<<<<<<<<<<<<
14469  * for I in range(nSpace):
14470  * for ii in range(rowptr[I],rowptr[I+1]):
14471  */
14472  __pyx_t_28 = __pyx_v_nDOF_trial_element;
14473  __pyx_t_29 = __pyx_t_28;
14474  for (__pyx_t_30 = 0; __pyx_t_30 < __pyx_t_29; __pyx_t_30+=1) {
14475  __pyx_v_j = __pyx_t_30;
14476 
14477  /* "subsurfaceTransportFunctions.pyx":663
14478  * #Picard part first
14479  * for j in range(nDOF_trial_element):
14480  * for I in range(nSpace): # <<<<<<<<<<<<<<
14481  * for ii in range(rowptr[I],rowptr[I+1]):
14482  * elementJacobian[eN,i,j] += weight*a_up[ii]*q_grad_v[eN,ebN,j,colind[ii]]*q_grad_w[eN,ebN,i,I]
14483  */
14484  __pyx_t_34 = __pyx_v_nSpace;
14485  __pyx_t_44 = __pyx_t_34;
14486  for (__pyx_t_45 = 0; __pyx_t_45 < __pyx_t_44; __pyx_t_45+=1) {
14487  __pyx_v_I = __pyx_t_45;
14488 
14489  /* "subsurfaceTransportFunctions.pyx":664
14490  * for j in range(nDOF_trial_element):
14491  * for I in range(nSpace):
14492  * for ii in range(rowptr[I],rowptr[I+1]): # <<<<<<<<<<<<<<
14493  * elementJacobian[eN,i,j] += weight*a_up[ii]*q_grad_v[eN,ebN,j,colind[ii]]*q_grad_w[eN,ebN,i,I]
14494  * #j picard
14495  */
14496  __pyx_t_46 = (__pyx_v_I + 1);
14497  __pyx_t_47 = -1;
14498  if (__pyx_t_46 < 0) {
14499  __pyx_t_46 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
14500  if (unlikely(__pyx_t_46 < 0)) __pyx_t_47 = 0;
14501  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_rowptr.diminfo[0].shape)) __pyx_t_47 = 0;
14502  if (unlikely(__pyx_t_47 != -1)) {
14503  __Pyx_RaiseBufferIndexError(__pyx_t_47);
14504  __PYX_ERR(0, 664, __pyx_L1_error)
14505  }
14506  __pyx_t_48 = (*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_rowptr.rcbuffer->pybuffer.buf, __pyx_t_46, __pyx_pybuffernd_rowptr.diminfo[0].strides));
14507  __pyx_t_49 = __pyx_v_I;
14508  __pyx_t_47 = -1;
14509  if (__pyx_t_49 < 0) {
14510  __pyx_t_49 += __pyx_pybuffernd_rowptr.diminfo[0].shape;
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15148  * numpy.ndarray[DTYPE_t,ndim=3] w,
15149  * numpy.ndarray[DTYPE_t,ndim=3] v,
15150  */
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15354  * cdef int eN,i,j,k
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15377  * for k in range(dmt.shape[1]): # <<<<<<<<<<<<<<
15378  * vol += dV[eN,k]
15379  * for i in range(w.shape[2]):
15380  */
15381  __pyx_t_4 = (__pyx_v_dmt->dimensions[1]);
15382  __pyx_t_5 = __pyx_t_4;
15383  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
15384  __pyx_v_k = __pyx_t_6;
15385 
15386  /* "subsurfaceTransportFunctions.pyx":705
15387  * vol = 0.0 #should I save a loop?
15388  * for k in range(dmt.shape[1]):
15389  * vol += dV[eN,k] # <<<<<<<<<<<<<<
15390  * for i in range(w.shape[2]):
15391  * for j in range(v.shape[2]):
15392  */
15393  __pyx_t_7 = __pyx_v_eN;
15394  __pyx_t_8 = __pyx_v_k;
15395  __pyx_t_9 = -1;
15396  if (__pyx_t_7 < 0) {
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15399  } else if (unlikely(__pyx_t_7 >= __pyx_pybuffernd_dV.diminfo[0].shape)) __pyx_t_9 = 0;
15400  if (__pyx_t_8 < 0) {
15401  __pyx_t_8 += __pyx_pybuffernd_dV.diminfo[1].shape;
15402  if (unlikely(__pyx_t_8 < 0)) __pyx_t_9 = 1;
15403  } else if (unlikely(__pyx_t_8 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_9 = 1;
15404  if (unlikely(__pyx_t_9 != -1)) {
15405  __Pyx_RaiseBufferIndexError(__pyx_t_9);
15406  __PYX_ERR(0, 705, __pyx_L1_error)
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15408  __pyx_v_vol = (__pyx_v_vol + (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dV.rcbuffer->pybuffer.buf, __pyx_t_7, __pyx_pybuffernd_dV.diminfo[0].strides, __pyx_t_8, __pyx_pybuffernd_dV.diminfo[1].strides)));
15409  }
15410 
15411  /* "subsurfaceTransportFunctions.pyx":706
15412  * for k in range(dmt.shape[1]):
15413  * vol += dV[eN,k]
15414  * for i in range(w.shape[2]): # <<<<<<<<<<<<<<
15415  * for j in range(v.shape[2]):
15416  * dmtj_avg = 0.0
15417  */
15418  __pyx_t_4 = (__pyx_v_w->dimensions[2]);
15419  __pyx_t_5 = __pyx_t_4;
15420  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
15421  __pyx_v_i = __pyx_t_6;
15422 
15423  /* "subsurfaceTransportFunctions.pyx":707
15424  * vol += dV[eN,k]
15425  * for i in range(w.shape[2]):
15426  * for j in range(v.shape[2]): # <<<<<<<<<<<<<<
15427  * dmtj_avg = 0.0
15428  * for k in range(dmt.shape[1]):
15429  */
15430  __pyx_t_10 = (__pyx_v_v->dimensions[2]);
15431  __pyx_t_11 = __pyx_t_10;
15432  for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_11; __pyx_t_9+=1) {
15433  __pyx_v_j = __pyx_t_9;
15434 
15435  /* "subsurfaceTransportFunctions.pyx":708
15436  * for i in range(w.shape[2]):
15437  * for j in range(v.shape[2]):
15438  * dmtj_avg = 0.0 # <<<<<<<<<<<<<<
15439  * for k in range(dmt.shape[1]):
15440  * dmtj_avg += dV[eN,k]*dmt[eN,k]*v[eN,k,j]
15441  */
15442  __pyx_v_dmtj_avg = 0.0;
15443 
15444  /* "subsurfaceTransportFunctions.pyx":709
15445  * for j in range(v.shape[2]):
15446  * dmtj_avg = 0.0
15447  * for k in range(dmt.shape[1]): # <<<<<<<<<<<<<<
15448  * dmtj_avg += dV[eN,k]*dmt[eN,k]*v[eN,k,j]
15449  * dmtj_avg /= vol
15450  */
15451  __pyx_t_12 = (__pyx_v_dmt->dimensions[1]);
15452  __pyx_t_13 = __pyx_t_12;
15453  for (__pyx_t_14 = 0; __pyx_t_14 < __pyx_t_13; __pyx_t_14+=1) {
15454  __pyx_v_k = __pyx_t_14;
15455 
15456  /* "subsurfaceTransportFunctions.pyx":710
15457  * dmtj_avg = 0.0
15458  * for k in range(dmt.shape[1]):
15459  * dmtj_avg += dV[eN,k]*dmt[eN,k]*v[eN,k,j] # <<<<<<<<<<<<<<
15460  * dmtj_avg /= vol
15461  * jacobian_weak_residual[eN,i,j] += dmtj_avg*w[eN,k,i]*dV[eN,k]
15462  */
15463  __pyx_t_15 = __pyx_v_eN;
15464  __pyx_t_16 = __pyx_v_k;
15465  __pyx_t_17 = -1;
15466  if (__pyx_t_15 < 0) {
15467  __pyx_t_15 += __pyx_pybuffernd_dV.diminfo[0].shape;
15468  if (unlikely(__pyx_t_15 < 0)) __pyx_t_17 = 0;
15469  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_dV.diminfo[0].shape)) __pyx_t_17 = 0;
15470  if (__pyx_t_16 < 0) {
15471  __pyx_t_16 += __pyx_pybuffernd_dV.diminfo[1].shape;
15472  if (unlikely(__pyx_t_16 < 0)) __pyx_t_17 = 1;
15473  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_17 = 1;
15474  if (unlikely(__pyx_t_17 != -1)) {
15475  __Pyx_RaiseBufferIndexError(__pyx_t_17);
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15478  __pyx_t_18 = __pyx_v_eN;
15479  __pyx_t_19 = __pyx_v_k;
15480  __pyx_t_17 = -1;
15481  if (__pyx_t_18 < 0) {
15482  __pyx_t_18 += __pyx_pybuffernd_dmt.diminfo[0].shape;
15483  if (unlikely(__pyx_t_18 < 0)) __pyx_t_17 = 0;
15484  } else if (unlikely(__pyx_t_18 >= __pyx_pybuffernd_dmt.diminfo[0].shape)) __pyx_t_17 = 0;
15485  if (__pyx_t_19 < 0) {
15486  __pyx_t_19 += __pyx_pybuffernd_dmt.diminfo[1].shape;
15487  if (unlikely(__pyx_t_19 < 0)) __pyx_t_17 = 1;
15488  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_dmt.diminfo[1].shape)) __pyx_t_17 = 1;
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15495  __pyx_t_22 = __pyx_v_j;
15496  __pyx_t_17 = -1;
15497  if (__pyx_t_20 < 0) {
15498  __pyx_t_20 += __pyx_pybuffernd_v.diminfo[0].shape;
15499  if (unlikely(__pyx_t_20 < 0)) __pyx_t_17 = 0;
15500  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_17 = 0;
15501  if (__pyx_t_21 < 0) {
15502  __pyx_t_21 += __pyx_pybuffernd_v.diminfo[1].shape;
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15504  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_17 = 1;
15505  if (__pyx_t_22 < 0) {
15506  __pyx_t_22 += __pyx_pybuffernd_v.diminfo[2].shape;
15507  if (unlikely(__pyx_t_22 < 0)) __pyx_t_17 = 2;
15508  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_17 = 2;
15509  if (unlikely(__pyx_t_17 != -1)) {
15510  __Pyx_RaiseBufferIndexError(__pyx_t_17);
15511  __PYX_ERR(0, 710, __pyx_L1_error)
15512  }
15513  __pyx_v_dmtj_avg = (__pyx_v_dmtj_avg + (((*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dV.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_dV.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_dV.diminfo[1].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dmt.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_dmt.diminfo[0].strides, __pyx_t_19, __pyx_pybuffernd_dmt.diminfo[1].strides))) * (*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_20, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_21, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_22, __pyx_pybuffernd_v.diminfo[2].strides))));
15514  }
15515 
15516  /* "subsurfaceTransportFunctions.pyx":711
15517  * for k in range(dmt.shape[1]):
15518  * dmtj_avg += dV[eN,k]*dmt[eN,k]*v[eN,k,j]
15519  * dmtj_avg /= vol # <<<<<<<<<<<<<<
15520  * jacobian_weak_residual[eN,i,j] += dmtj_avg*w[eN,k,i]*dV[eN,k]
15521  *
15522  */
15523  if (unlikely(__pyx_v_vol == 0)) {
15524  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
15525  __PYX_ERR(0, 711, __pyx_L1_error)
15526  }
15527  __pyx_v_dmtj_avg = (__pyx_v_dmtj_avg / __pyx_v_vol);
15528 
15529  /* "subsurfaceTransportFunctions.pyx":712
15530  * dmtj_avg += dV[eN,k]*dmt[eN,k]*v[eN,k,j]
15531  * dmtj_avg /= vol
15532  * jacobian_weak_residual[eN,i,j] += dmtj_avg*w[eN,k,i]*dV[eN,k] # <<<<<<<<<<<<<<
15533  *
15534  * ########################################################################
15535  */
15536  __pyx_t_23 = __pyx_v_eN;
15537  __pyx_t_24 = __pyx_v_k;
15538  __pyx_t_25 = __pyx_v_i;
15539  __pyx_t_14 = -1;
15540  if (__pyx_t_23 < 0) {
15541  __pyx_t_23 += __pyx_pybuffernd_w.diminfo[0].shape;
15542  if (unlikely(__pyx_t_23 < 0)) __pyx_t_14 = 0;
15543  } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_w.diminfo[0].shape)) __pyx_t_14 = 0;
15544  if (__pyx_t_24 < 0) {
15545  __pyx_t_24 += __pyx_pybuffernd_w.diminfo[1].shape;
15546  if (unlikely(__pyx_t_24 < 0)) __pyx_t_14 = 1;
15547  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_w.diminfo[1].shape)) __pyx_t_14 = 1;
15548  if (__pyx_t_25 < 0) {
15549  __pyx_t_25 += __pyx_pybuffernd_w.diminfo[2].shape;
15550  if (unlikely(__pyx_t_25 < 0)) __pyx_t_14 = 2;
15551  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_w.diminfo[2].shape)) __pyx_t_14 = 2;
15552  if (unlikely(__pyx_t_14 != -1)) {
15553  __Pyx_RaiseBufferIndexError(__pyx_t_14);
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15556  __pyx_t_26 = __pyx_v_eN;
15557  __pyx_t_27 = __pyx_v_k;
15558  __pyx_t_14 = -1;
15559  if (__pyx_t_26 < 0) {
15560  __pyx_t_26 += __pyx_pybuffernd_dV.diminfo[0].shape;
15561  if (unlikely(__pyx_t_26 < 0)) __pyx_t_14 = 0;
15562  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_dV.diminfo[0].shape)) __pyx_t_14 = 0;
15563  if (__pyx_t_27 < 0) {
15564  __pyx_t_27 += __pyx_pybuffernd_dV.diminfo[1].shape;
15565  if (unlikely(__pyx_t_27 < 0)) __pyx_t_14 = 1;
15566  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_14 = 1;
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15568  __Pyx_RaiseBufferIndexError(__pyx_t_14);
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15571  __pyx_t_28 = __pyx_v_eN;
15572  __pyx_t_29 = __pyx_v_i;
15573  __pyx_t_30 = __pyx_v_j;
15574  __pyx_t_14 = -1;
15575  if (__pyx_t_28 < 0) {
15576  __pyx_t_28 += __pyx_pybuffernd_jacobian_weak_residual.diminfo[0].shape;
15577  if (unlikely(__pyx_t_28 < 0)) __pyx_t_14 = 0;
15578  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_jacobian_weak_residual.diminfo[0].shape)) __pyx_t_14 = 0;
15579  if (__pyx_t_29 < 0) {
15580  __pyx_t_29 += __pyx_pybuffernd_jacobian_weak_residual.diminfo[1].shape;
15581  if (unlikely(__pyx_t_29 < 0)) __pyx_t_14 = 1;
15582  } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_jacobian_weak_residual.diminfo[1].shape)) __pyx_t_14 = 1;
15583  if (__pyx_t_30 < 0) {
15584  __pyx_t_30 += __pyx_pybuffernd_jacobian_weak_residual.diminfo[2].shape;
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15586  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_jacobian_weak_residual.diminfo[2].shape)) __pyx_t_14 = 2;
15587  if (unlikely(__pyx_t_14 != -1)) {
15588  __Pyx_RaiseBufferIndexError(__pyx_t_14);
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15592  }
15593  }
15594  }
15595 
15596  /* "subsurfaceTransportFunctions.pyx":692
15597  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
15598  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
15599  * def updateMassJacobian_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] dmt, # <<<<<<<<<<<<<<
15600  * numpy.ndarray[DTYPE_t,ndim=3] w,
15601  * numpy.ndarray[DTYPE_t,ndim=3] v,
15602  */
15603 
15604  /* function exit code */
15605  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
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15607  __pyx_L1_error:;
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15609  __Pyx_PyThreadState_declare
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15611  __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
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15614  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_jacobian_weak_residual.rcbuffer->pybuffer);
15615  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
15616  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_w.rcbuffer->pybuffer);
15617  __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);}
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15621  __pyx_L0:;
15622  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dV.rcbuffer->pybuffer);
15623  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dmt.rcbuffer->pybuffer);
15624  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_jacobian_weak_residual.rcbuffer->pybuffer);
15625  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_v.rcbuffer->pybuffer);
15626  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_w.rcbuffer->pybuffer);
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15632 
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15634  * #ELLAM
15635  * ########################################################################
15636  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
15637  * numpy.ndarray[DTYPE_t,ndim=4] n,
15638  * numpy.ndarray[DTYPE_t,ndim=3] dS,
15639  */
15640 
15641 /* Python wrapper */
15642 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_41calculateNormalFlux(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
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15644 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_41calculateNormalFlux(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
15645  PyArrayObject *__pyx_v_v = 0;
15646  PyArrayObject *__pyx_v_n = 0;
15647  PyArrayObject *__pyx_v_dS = 0;
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15654  PyObject* values[4] = {0,0,0,0};
15655  if (unlikely(__pyx_kwds)) {
15656  Py_ssize_t kw_args;
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15658  switch (pos_args) {
15659  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
15660  CYTHON_FALLTHROUGH;
15661  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
15662  CYTHON_FALLTHROUGH;
15663  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
15664  CYTHON_FALLTHROUGH;
15665  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
15666  CYTHON_FALLTHROUGH;
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15699  } else {
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15701  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
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15703  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
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15727  __pyx_r = NULL;
15728  __pyx_L0:;
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15732 
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15735  int __pyx_v_ebN;
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15744  __Pyx_Buffer __pyx_pybuffer_n;
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15753  npy_intp __pyx_t_5;
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15755  npy_intp __pyx_t_7;
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15759  npy_intp __pyx_t_11;
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15768  Py_ssize_t __pyx_t_20;
15769  Py_ssize_t __pyx_t_21;
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15771  Py_ssize_t __pyx_t_23;
15772  Py_ssize_t __pyx_t_24;
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15784  __pyx_pybuffer_dS.pybuffer.buf = NULL;
15785  __pyx_pybuffer_dS.refcount = 0;
15786  __pyx_pybuffernd_dS.data = NULL;
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15803  __Pyx_BufFmt_StackElem __pyx_stack[1];
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15808  __Pyx_BufFmt_StackElem __pyx_stack[1];
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15812 
15813  /* "subsurfaceTransportFunctions.pyx":724
15814  * cdef int eN,ebN,kb
15815  * cdef double integral
15816  * for eN in range(n.shape[0]): # <<<<<<<<<<<<<<
15817  * for ebN in range(n.shape[1]):
15818  * integral = 0.0
15819  */
15820  __pyx_t_1 = (__pyx_v_n->dimensions[0]);
15821  __pyx_t_2 = __pyx_t_1;
15822  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
15823  __pyx_v_eN = __pyx_t_3;
15824 
15825  /* "subsurfaceTransportFunctions.pyx":725
15826  * cdef double integral
15827  * for eN in range(n.shape[0]):
15828  * for ebN in range(n.shape[1]): # <<<<<<<<<<<<<<
15829  * integral = 0.0
15830  * for kb in range(n.shape[2]):
15831  */
15832  __pyx_t_4 = (__pyx_v_n->dimensions[1]);
15833  __pyx_t_5 = __pyx_t_4;
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15836 
15837  /* "subsurfaceTransportFunctions.pyx":726
15838  * for eN in range(n.shape[0]):
15839  * for ebN in range(n.shape[1]):
15840  * integral = 0.0 # <<<<<<<<<<<<<<
15841  * for kb in range(n.shape[2]):
15842  * for I in range(n.shape[3]):
15843  */
15844  __pyx_v_integral = 0.0;
15845 
15846  /* "subsurfaceTransportFunctions.pyx":727
15847  * for ebN in range(n.shape[1]):
15848  * integral = 0.0
15849  * for kb in range(n.shape[2]): # <<<<<<<<<<<<<<
15850  * for I in range(n.shape[3]):
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15852  */
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15854  __pyx_t_8 = __pyx_t_7;
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15856  __pyx_v_kb = __pyx_t_9;
15857 
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15859  * integral = 0.0
15860  * for kb in range(n.shape[2]):
15861  * for I in range(n.shape[3]): # <<<<<<<<<<<<<<
15862  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb]
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15864  */
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15866  __pyx_t_11 = __pyx_t_10;
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15868  __pyx_v_I = __pyx_t_12;
15869 
15870  /* "subsurfaceTransportFunctions.pyx":729
15871  * for kb in range(n.shape[2]):
15872  * for I in range(n.shape[3]):
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15874  * flux[eN,ebN] = integral
15875  *
15876  */
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15886  if (__pyx_t_14 < 0) {
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15890  if (__pyx_t_15 < 0) {
15891  __pyx_t_15 += __pyx_pybuffernd_v.diminfo[2].shape;
15892  if (unlikely(__pyx_t_15 < 0)) __pyx_t_17 = 2;
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15939  if (__pyx_t_24 < 0) {
15940  __pyx_t_24 += __pyx_pybuffernd_dS.diminfo[2].shape;
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15942  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_dS.diminfo[2].shape)) __pyx_t_17 = 2;
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15948  }
15949  }
15950 
15951  /* "subsurfaceTransportFunctions.pyx":730
15952  * for I in range(n.shape[3]):
15953  * integral += v[eN,ebN,kb,I]*n[eN,ebN,kb,I]*dS[eN,ebN,kb]
15954  * flux[eN,ebN] = integral # <<<<<<<<<<<<<<
15955  *
15956  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df,
15957  */
15958  __pyx_t_25 = __pyx_v_eN;
15959  __pyx_t_26 = __pyx_v_ebN;
15960  __pyx_t_9 = -1;
15961  if (__pyx_t_25 < 0) {
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15964  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_flux.diminfo[0].shape)) __pyx_t_9 = 0;
15965  if (__pyx_t_26 < 0) {
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15968  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_flux.diminfo[1].shape)) __pyx_t_9 = 1;
15969  if (unlikely(__pyx_t_9 != -1)) {
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15972  }
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15974  }
15975  }
15976 
15977  /* "subsurfaceTransportFunctions.pyx":717
15978  * #ELLAM
15979  * ########################################################################
15980  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
15981  * numpy.ndarray[DTYPE_t,ndim=4] n,
15982  * numpy.ndarray[DTYPE_t,ndim=3] dS,
15983  */
15984 
15985  /* function exit code */
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16014  *
16015  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
16016  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
16017  * numpy.ndarray[DTYPE_t,ndim=2] dm,
16018  */
16019 
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16298  * vol_e += dV[eN,k]
16299  * omega_e += dV[eN,k]*dm[eN,k]
16300  * for k in range(df.shape[1]): # <<<<<<<<<<<<<<
16301  * for I in range(df.shape[2]):
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16308 
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16310  * omega_e += dV[eN,k]*dm[eN,k]
16311  * for k in range(df.shape[1]):
16312  * for I in range(df.shape[2]): # <<<<<<<<<<<<<<
16313  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
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16325  *
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16415  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
16416  *
16417  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
16418  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
16419  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
16420  */
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16598  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_l2g.rcbuffer->pybuffer, (PyObject*)__pyx_v_l2g, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_ITYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 753, __pyx_L1_error)
16599  }
16600  __pyx_pybuffernd_l2g.diminfo[0].strides = __pyx_pybuffernd_l2g.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_l2g.diminfo[0].shape = __pyx_pybuffernd_l2g.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_l2g.diminfo[1].strides = __pyx_pybuffernd_l2g.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_l2g.diminfo[1].shape = __pyx_pybuffernd_l2g.rcbuffer->pybuffer.shape[1];
16601  {
16602  __Pyx_BufFmt_StackElem __pyx_stack[1];
16603  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_dm.rcbuffer->pybuffer, (PyObject*)__pyx_v_dm, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 753, __pyx_L1_error)
16604  }
16605  __pyx_pybuffernd_dm.diminfo[0].strides = __pyx_pybuffernd_dm.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dm.diminfo[0].shape = __pyx_pybuffernd_dm.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_dm.diminfo[1].strides = __pyx_pybuffernd_dm.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_dm.diminfo[1].shape = __pyx_pybuffernd_dm.rcbuffer->pybuffer.shape[1];
16606  {
16607  __Pyx_BufFmt_StackElem __pyx_stack[1];
16608  if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_dV.rcbuffer->pybuffer, (PyObject*)__pyx_v_dV, &__Pyx_TypeInfo_nn___pyx_t_28subsurfaceTransportFunctions_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) __PYX_ERR(0, 753, __pyx_L1_error)
16609  }
16610  __pyx_pybuffernd_dV.diminfo[0].strides = __pyx_pybuffernd_dV.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_dV.diminfo[0].shape = __pyx_pybuffernd_dV.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_dV.diminfo[1].strides = __pyx_pybuffernd_dV.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_dV.diminfo[1].shape = __pyx_pybuffernd_dV.rcbuffer->pybuffer.shape[1];
16611 
16612  /* "subsurfaceTransportFunctions.pyx":765
16613  * cdef double omega_e, vol_e
16614  *
16615  * for eN in range(dm.shape[0]): # <<<<<<<<<<<<<<
16616  * omega_e = 0.0
16617  * vol_e = 0.0
16618  */
16619  __pyx_t_1 = (__pyx_v_dm->dimensions[0]);
16620  __pyx_t_2 = __pyx_t_1;
16621  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
16622  __pyx_v_eN = __pyx_t_3;
16623 
16624  /* "subsurfaceTransportFunctions.pyx":766
16625  *
16626  * for eN in range(dm.shape[0]):
16627  * omega_e = 0.0 # <<<<<<<<<<<<<<
16628  * vol_e = 0.0
16629  * for k in range(dm.shape[1]):
16630  */
16631  __pyx_v_omega_e = 0.0;
16632 
16633  /* "subsurfaceTransportFunctions.pyx":767
16634  * for eN in range(dm.shape[0]):
16635  * omega_e = 0.0
16636  * vol_e = 0.0 # <<<<<<<<<<<<<<
16637  * for k in range(dm.shape[1]):
16638  * vol_e += dV[eN,k]
16639  */
16640  __pyx_v_vol_e = 0.0;
16641 
16642  /* "subsurfaceTransportFunctions.pyx":768
16643  * omega_e = 0.0
16644  * vol_e = 0.0
16645  * for k in range(dm.shape[1]): # <<<<<<<<<<<<<<
16646  * vol_e += dV[eN,k]
16647  * omega_e += dV[eN,k]*dm[eN,k]
16648  */
16649  __pyx_t_4 = (__pyx_v_dm->dimensions[1]);
16650  __pyx_t_5 = __pyx_t_4;
16651  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
16652  __pyx_v_k = __pyx_t_6;
16653 
16654  /* "subsurfaceTransportFunctions.pyx":769
16655  * vol_e = 0.0
16656  * for k in range(dm.shape[1]):
16657  * vol_e += dV[eN,k] # <<<<<<<<<<<<<<
16658  * omega_e += dV[eN,k]*dm[eN,k]
16659  * for j in range(l2g.shape[1]):
16660  */
16661  __pyx_t_7 = __pyx_v_eN;
16662  __pyx_t_8 = __pyx_v_k;
16663  __pyx_t_9 = -1;
16664  if (__pyx_t_7 < 0) {
16665  __pyx_t_7 += __pyx_pybuffernd_dV.diminfo[0].shape;
16666  if (unlikely(__pyx_t_7 < 0)) __pyx_t_9 = 0;
16667  } else if (unlikely(__pyx_t_7 >= __pyx_pybuffernd_dV.diminfo[0].shape)) __pyx_t_9 = 0;
16668  if (__pyx_t_8 < 0) {
16669  __pyx_t_8 += __pyx_pybuffernd_dV.diminfo[1].shape;
16670  if (unlikely(__pyx_t_8 < 0)) __pyx_t_9 = 1;
16671  } else if (unlikely(__pyx_t_8 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_9 = 1;
16672  if (unlikely(__pyx_t_9 != -1)) {
16673  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16674  __PYX_ERR(0, 769, __pyx_L1_error)
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16676  __pyx_v_vol_e = (__pyx_v_vol_e + (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dV.rcbuffer->pybuffer.buf, __pyx_t_7, __pyx_pybuffernd_dV.diminfo[0].strides, __pyx_t_8, __pyx_pybuffernd_dV.diminfo[1].strides)));
16677 
16678  /* "subsurfaceTransportFunctions.pyx":770
16679  * for k in range(dm.shape[1]):
16680  * vol_e += dV[eN,k]
16681  * omega_e += dV[eN,k]*dm[eN,k] # <<<<<<<<<<<<<<
16682  * for j in range(l2g.shape[1]):
16683  * J = l2g[eN,j]
16684  */
16685  __pyx_t_10 = __pyx_v_eN;
16686  __pyx_t_11 = __pyx_v_k;
16687  __pyx_t_9 = -1;
16688  if (__pyx_t_10 < 0) {
16689  __pyx_t_10 += __pyx_pybuffernd_dV.diminfo[0].shape;
16690  if (unlikely(__pyx_t_10 < 0)) __pyx_t_9 = 0;
16691  } else if (unlikely(__pyx_t_10 >= __pyx_pybuffernd_dV.diminfo[0].shape)) __pyx_t_9 = 0;
16692  if (__pyx_t_11 < 0) {
16693  __pyx_t_11 += __pyx_pybuffernd_dV.diminfo[1].shape;
16694  if (unlikely(__pyx_t_11 < 0)) __pyx_t_9 = 1;
16695  } else if (unlikely(__pyx_t_11 >= __pyx_pybuffernd_dV.diminfo[1].shape)) __pyx_t_9 = 1;
16696  if (unlikely(__pyx_t_9 != -1)) {
16697  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16698  __PYX_ERR(0, 770, __pyx_L1_error)
16699  }
16700  __pyx_t_12 = __pyx_v_eN;
16701  __pyx_t_13 = __pyx_v_k;
16702  __pyx_t_9 = -1;
16703  if (__pyx_t_12 < 0) {
16704  __pyx_t_12 += __pyx_pybuffernd_dm.diminfo[0].shape;
16705  if (unlikely(__pyx_t_12 < 0)) __pyx_t_9 = 0;
16706  } else if (unlikely(__pyx_t_12 >= __pyx_pybuffernd_dm.diminfo[0].shape)) __pyx_t_9 = 0;
16707  if (__pyx_t_13 < 0) {
16708  __pyx_t_13 += __pyx_pybuffernd_dm.diminfo[1].shape;
16709  if (unlikely(__pyx_t_13 < 0)) __pyx_t_9 = 1;
16710  } else if (unlikely(__pyx_t_13 >= __pyx_pybuffernd_dm.diminfo[1].shape)) __pyx_t_9 = 1;
16711  if (unlikely(__pyx_t_9 != -1)) {
16712  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16713  __PYX_ERR(0, 770, __pyx_L1_error)
16714  }
16715  __pyx_v_omega_e = (__pyx_v_omega_e + ((*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dV.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_dV.diminfo[0].strides, __pyx_t_11, __pyx_pybuffernd_dV.diminfo[1].strides)) * (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_dm.rcbuffer->pybuffer.buf, __pyx_t_12, __pyx_pybuffernd_dm.diminfo[0].strides, __pyx_t_13, __pyx_pybuffernd_dm.diminfo[1].strides))));
16716  }
16717 
16718  /* "subsurfaceTransportFunctions.pyx":771
16719  * vol_e += dV[eN,k]
16720  * omega_e += dV[eN,k]*dm[eN,k]
16721  * for j in range(l2g.shape[1]): # <<<<<<<<<<<<<<
16722  * J = l2g[eN,j]
16723  * characteristic_velocity_dofs[J] = df_dofs[J]*vol_e/(omega_e+1.0e-12)
16724  */
16725  __pyx_t_4 = (__pyx_v_l2g->dimensions[1]);
16726  __pyx_t_5 = __pyx_t_4;
16727  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
16728  __pyx_v_j = __pyx_t_6;
16729 
16730  /* "subsurfaceTransportFunctions.pyx":772
16731  * omega_e += dV[eN,k]*dm[eN,k]
16732  * for j in range(l2g.shape[1]):
16733  * J = l2g[eN,j] # <<<<<<<<<<<<<<
16734  * characteristic_velocity_dofs[J] = df_dofs[J]*vol_e/(omega_e+1.0e-12)
16735  *
16736  */
16737  __pyx_t_14 = __pyx_v_eN;
16738  __pyx_t_15 = __pyx_v_j;
16739  __pyx_t_9 = -1;
16740  if (__pyx_t_14 < 0) {
16741  __pyx_t_14 += __pyx_pybuffernd_l2g.diminfo[0].shape;
16742  if (unlikely(__pyx_t_14 < 0)) __pyx_t_9 = 0;
16743  } else if (unlikely(__pyx_t_14 >= __pyx_pybuffernd_l2g.diminfo[0].shape)) __pyx_t_9 = 0;
16744  if (__pyx_t_15 < 0) {
16745  __pyx_t_15 += __pyx_pybuffernd_l2g.diminfo[1].shape;
16746  if (unlikely(__pyx_t_15 < 0)) __pyx_t_9 = 1;
16747  } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_l2g.diminfo[1].shape)) __pyx_t_9 = 1;
16748  if (unlikely(__pyx_t_9 != -1)) {
16749  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16750  __PYX_ERR(0, 772, __pyx_L1_error)
16751  }
16752  __pyx_v_J = (*__Pyx_BufPtrStrided2d(__pyx_t_28subsurfaceTransportFunctions_ITYPE_t *, __pyx_pybuffernd_l2g.rcbuffer->pybuffer.buf, __pyx_t_14, __pyx_pybuffernd_l2g.diminfo[0].strides, __pyx_t_15, __pyx_pybuffernd_l2g.diminfo[1].strides));
16753 
16754  /* "subsurfaceTransportFunctions.pyx":773
16755  * for j in range(l2g.shape[1]):
16756  * J = l2g[eN,j]
16757  * characteristic_velocity_dofs[J] = df_dofs[J]*vol_e/(omega_e+1.0e-12) # <<<<<<<<<<<<<<
16758  *
16759  * #problem specific velocity evaluation
16760  */
16761  __pyx_t_16 = __pyx_v_J;
16762  __pyx_t_9 = -1;
16763  if (__pyx_t_16 < 0) {
16764  __pyx_t_16 += __pyx_pybuffernd_df_dofs.diminfo[0].shape;
16765  if (unlikely(__pyx_t_16 < 0)) __pyx_t_9 = 0;
16766  } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_df_dofs.diminfo[0].shape)) __pyx_t_9 = 0;
16767  if (unlikely(__pyx_t_9 != -1)) {
16768  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16769  __PYX_ERR(0, 773, __pyx_L1_error)
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16771  __pyx_t_17 = ((*__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_df_dofs.rcbuffer->pybuffer.buf, __pyx_t_16, __pyx_pybuffernd_df_dofs.diminfo[0].strides)) * __pyx_v_vol_e);
16772  __pyx_t_18 = (__pyx_v_omega_e + 1.0e-12);
16773  if (unlikely(__pyx_t_18 == 0)) {
16774  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
16775  __PYX_ERR(0, 773, __pyx_L1_error)
16776  }
16777  __pyx_t_19 = __pyx_v_J;
16778  __pyx_t_9 = -1;
16779  if (__pyx_t_19 < 0) {
16780  __pyx_t_19 += __pyx_pybuffernd_characteristic_velocity_dofs.diminfo[0].shape;
16781  if (unlikely(__pyx_t_19 < 0)) __pyx_t_9 = 0;
16782  } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_characteristic_velocity_dofs.diminfo[0].shape)) __pyx_t_9 = 0;
16783  if (unlikely(__pyx_t_9 != -1)) {
16784  __Pyx_RaiseBufferIndexError(__pyx_t_9);
16785  __PYX_ERR(0, 773, __pyx_L1_error)
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16787  *__Pyx_BufPtrStrided1d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_characteristic_velocity_dofs.rcbuffer->pybuffer.buf, __pyx_t_19, __pyx_pybuffernd_characteristic_velocity_dofs.diminfo[0].strides) = (__pyx_t_17 / __pyx_t_18);
16788  }
16789  }
16790 
16791  /* "subsurfaceTransportFunctions.pyx":753
16792  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
16793  *
16794  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
16795  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
16796  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
16797  */
16798 
16799  /* function exit code */
16800  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
16801  goto __pyx_L0;
16802  __pyx_L1_error:;
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16804  __Pyx_PyThreadState_declare
16805  __Pyx_PyThreadState_assign
16806  __Pyx_ErrFetch(&__pyx_type, &__pyx_value, &__pyx_tb);
16807  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_characteristic_velocity_dofs.rcbuffer->pybuffer);
16808  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dV.rcbuffer->pybuffer);
16809  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_df_dofs.rcbuffer->pybuffer);
16810  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dm.rcbuffer->pybuffer);
16811  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_l2g.rcbuffer->pybuffer);
16812  __Pyx_ErrRestore(__pyx_type, __pyx_value, __pyx_tb);}
16813  __Pyx_AddTraceback("subsurfaceTransportFunctions.computeSimpleCharacteristicVelocityFromVelocityDOFs", __pyx_clineno, __pyx_lineno, __pyx_filename);
16814  __pyx_r = NULL;
16815  goto __pyx_L2;
16816  __pyx_L0:;
16817  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_characteristic_velocity_dofs.rcbuffer->pybuffer);
16818  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dV.rcbuffer->pybuffer);
16819  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_df_dofs.rcbuffer->pybuffer);
16820  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_dm.rcbuffer->pybuffer);
16821  __Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_l2g.rcbuffer->pybuffer);
16822  __pyx_L2:;
16823  __Pyx_XGIVEREF(__pyx_r);
16824  __Pyx_RefNannyFinishContext();
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16827 
16828 /* "subsurfaceTransportFunctions.pyx":776
16829  *
16830  * #problem specific velocity evaluation
16831  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
16832  * double t,
16833  * double tForReversal,
16834  */
16835 
16836 /* Python wrapper */
16837 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
16838 static PyMethodDef __pyx_mdef_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3 = {"rotatingGaussianElementVelocityEval3", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3, METH_VARARGS|METH_KEYWORDS, 0};
16839 static PyObject *__pyx_pw_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
16840  int __pyx_v_transient;
16841  double __pyx_v_t;
16842  double __pyx_v_tForReversal;
16843  double __pyx_v_clock;
16844  double __pyx_v_xc;
16845  double __pyx_v_yc;
16846  PyArrayObject *__pyx_v_x = 0;
16847  PyArrayObject *__pyx_v_v = 0;
16848  double __pyx_v_zvelocity;
16849  PyObject *__pyx_r = 0;
16850  __Pyx_RefNannyDeclarations
16851  __Pyx_RefNannySetupContext("rotatingGaussianElementVelocityEval3 (wrapper)", 0);
16852  {
16853  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_transient,&__pyx_n_s_t,&__pyx_n_s_tForReversal,&__pyx_n_s_clock,&__pyx_n_s_xc,&__pyx_n_s_yc,&__pyx_n_s_x,&__pyx_n_s_v,&__pyx_n_s_zvelocity,0};
16854  PyObject* values[9] = {0,0,0,0,0,0,0,0,0};
16855  if (unlikely(__pyx_kwds)) {
16856  Py_ssize_t kw_args;
16857  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
16858  switch (pos_args) {
16859  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
16860  CYTHON_FALLTHROUGH;
16861  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
16862  CYTHON_FALLTHROUGH;
16863  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
16864  CYTHON_FALLTHROUGH;
16865  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
16866  CYTHON_FALLTHROUGH;
16867  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
16868  CYTHON_FALLTHROUGH;
16869  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
16870  CYTHON_FALLTHROUGH;
16871  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
16872  CYTHON_FALLTHROUGH;
16873  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
16874  CYTHON_FALLTHROUGH;
16875  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
16876  CYTHON_FALLTHROUGH;
16877  case 0: break;
16878  default: goto __pyx_L5_argtuple_error;
16879  }
16880  kw_args = PyDict_Size(__pyx_kwds);
16881  switch (pos_args) {
16882  case 0:
16883  if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_transient)) != 0)) kw_args--;
16884  else goto __pyx_L5_argtuple_error;
16885  CYTHON_FALLTHROUGH;
16886  case 1:
16887  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_t)) != 0)) kw_args--;
16888  else {
16889  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval3", 0, 8, 9, 1); __PYX_ERR(0, 776, __pyx_L3_error)
16890  }
16891  CYTHON_FALLTHROUGH;
16892  case 2:
16893  if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_tForReversal)) != 0)) kw_args--;
16894  else {
16895  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval3", 0, 8, 9, 2); __PYX_ERR(0, 776, __pyx_L3_error)
16896  }
16897  CYTHON_FALLTHROUGH;
16898  case 3:
16899  if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clock)) != 0)) kw_args--;
16900  else {
16901  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval3", 0, 8, 9, 3); __PYX_ERR(0, 776, __pyx_L3_error)
16902  }
16903  CYTHON_FALLTHROUGH;
16904  case 4:
16905  if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_xc)) != 0)) kw_args--;
16906  else {
16907  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval3", 0, 8, 9, 4); __PYX_ERR(0, 776, __pyx_L3_error)
16908  }
16909  CYTHON_FALLTHROUGH;
16910  case 5:
16911  if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_yc)) != 0)) kw_args--;
16912  else {
16913  __Pyx_RaiseArgtupleInvalid("rotatingGaussianElementVelocityEval3", 0, 8, 9, 5); __PYX_ERR(0, 776, __pyx_L3_error)
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16915  CYTHON_FALLTHROUGH;
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17236 
17237  /* "subsurfaceTransportFunctions.pyx":793
17238  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17239  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17240  * v[eN,k,2]=zvelocity # <<<<<<<<<<<<<<
17241  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17242  * else:
17243  */
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17245  __pyx_t_22 = __pyx_v_k;
17246  __pyx_t_23 = 2;
17247  __pyx_t_11 = -1;
17248  if (__pyx_t_21 < 0) {
17249  __pyx_t_21 += __pyx_pybuffernd_v.diminfo[0].shape;
17250  if (unlikely(__pyx_t_21 < 0)) __pyx_t_11 = 0;
17251  } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_11 = 0;
17252  if (__pyx_t_22 < 0) {
17253  __pyx_t_22 += __pyx_pybuffernd_v.diminfo[1].shape;
17254  if (unlikely(__pyx_t_22 < 0)) __pyx_t_11 = 1;
17255  } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_11 = 1;
17256  if (__pyx_t_23 < 0) {
17257  __pyx_t_23 += __pyx_pybuffernd_v.diminfo[2].shape;
17258  if (unlikely(__pyx_t_23 < 0)) __pyx_t_11 = 2;
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17261  __Pyx_RaiseBufferIndexError(__pyx_t_11);
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17263  }
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17265 
17266  /* "subsurfaceTransportFunctions.pyx":794
17267  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17268  * v[eN,k,2]=zvelocity
17269  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock # <<<<<<<<<<<<<<
17270  * else:
17271  * for eN in range(x.shape[0]):
17272  */
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17279  __Pyx_GIVEREF(__pyx_t_24);
17280  PyTuple_SET_ITEM(__pyx_t_26, 0, __pyx_t_24);
17281  __Pyx_GIVEREF(__pyx_t_25);
17282  PyTuple_SET_ITEM(__pyx_t_26, 1, __pyx_t_25);
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17284  __Pyx_GIVEREF(__pyx_slice_);
17285  PyTuple_SET_ITEM(__pyx_t_26, 2, __pyx_slice_);
17286  __pyx_t_24 = 0;
17287  __pyx_t_25 = 0;
17288  __pyx_t_25 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_v), __pyx_t_26); if (unlikely(!__pyx_t_25)) __PYX_ERR(0, 794, __pyx_L1_error)
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17290  __pyx_t_27 = (__pyx_v_tForReversal - __pyx_v_t);
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17293  PyErr_SetString(PyExc_ZeroDivisionError, "float division");
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17297  __Pyx_GOTREF(__pyx_t_24);
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17299  __Pyx_GOTREF(__pyx_t_29);
17300  __Pyx_DECREF(__pyx_t_25); __pyx_t_25 = 0;
17301  __Pyx_DECREF(__pyx_t_24); __pyx_t_24 = 0;
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17305  }
17306  }
17307 
17308  /* "subsurfaceTransportFunctions.pyx":788
17309  * pi = M_PI
17310  * if v.shape[2] == 3:
17311  * if transient == 1: # <<<<<<<<<<<<<<
17312  * for eN in range(x.shape[0]):
17313  * for k in range(x.shape[1]):
17314  */
17315  goto __pyx_L4;
17316  }
17317 
17318  /* "subsurfaceTransportFunctions.pyx":796
17319  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17320  * else:
17321  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17322  * for k in range(x.shape[1]):
17323  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17324  */
17325  /*else*/ {
17326  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
17327  __pyx_t_3 = __pyx_t_2;
17328  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
17329  __pyx_v_eN = __pyx_t_4;
17330 
17331  /* "subsurfaceTransportFunctions.pyx":797
17332  * else:
17333  * for eN in range(x.shape[0]):
17334  * for k in range(x.shape[1]): # <<<<<<<<<<<<<<
17335  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17336  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17337  */
17338  __pyx_t_5 = (__pyx_v_x->dimensions[1]);
17339  __pyx_t_6 = __pyx_t_5;
17340  for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) {
17341  __pyx_v_k = __pyx_t_7;
17342 
17343  /* "subsurfaceTransportFunctions.pyx":798
17344  * for eN in range(x.shape[0]):
17345  * for k in range(x.shape[1]):
17346  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc) # <<<<<<<<<<<<<<
17347  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17348  * v[eN,k,2]=zvelocity
17349  */
17350  __pyx_t_30 = __pyx_v_eN;
17351  __pyx_t_31 = __pyx_v_k;
17352  __pyx_t_32 = 1;
17353  __pyx_t_11 = -1;
17354  if (__pyx_t_30 < 0) {
17355  __pyx_t_30 += __pyx_pybuffernd_x.diminfo[0].shape;
17356  if (unlikely(__pyx_t_30 < 0)) __pyx_t_11 = 0;
17357  } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_11 = 0;
17358  if (__pyx_t_31 < 0) {
17359  __pyx_t_31 += __pyx_pybuffernd_x.diminfo[1].shape;
17360  if (unlikely(__pyx_t_31 < 0)) __pyx_t_11 = 1;
17361  } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_11 = 1;
17362  if (__pyx_t_32 < 0) {
17363  __pyx_t_32 += __pyx_pybuffernd_x.diminfo[2].shape;
17364  if (unlikely(__pyx_t_32 < 0)) __pyx_t_11 = 2;
17365  } else if (unlikely(__pyx_t_32 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_11 = 2;
17366  if (unlikely(__pyx_t_11 != -1)) {
17367  __Pyx_RaiseBufferIndexError(__pyx_t_11);
17368  __PYX_ERR(0, 798, __pyx_L1_error)
17369  }
17370  __pyx_t_33 = __pyx_v_eN;
17371  __pyx_t_34 = __pyx_v_k;
17372  __pyx_t_35 = 0;
17373  __pyx_t_11 = -1;
17374  if (__pyx_t_33 < 0) {
17375  __pyx_t_33 += __pyx_pybuffernd_v.diminfo[0].shape;
17376  if (unlikely(__pyx_t_33 < 0)) __pyx_t_11 = 0;
17377  } else if (unlikely(__pyx_t_33 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_11 = 0;
17378  if (__pyx_t_34 < 0) {
17379  __pyx_t_34 += __pyx_pybuffernd_v.diminfo[1].shape;
17380  if (unlikely(__pyx_t_34 < 0)) __pyx_t_11 = 1;
17381  } else if (unlikely(__pyx_t_34 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_11 = 1;
17382  if (__pyx_t_35 < 0) {
17383  __pyx_t_35 += __pyx_pybuffernd_v.diminfo[2].shape;
17384  if (unlikely(__pyx_t_35 < 0)) __pyx_t_11 = 2;
17385  } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_11 = 2;
17386  if (unlikely(__pyx_t_11 != -1)) {
17387  __Pyx_RaiseBufferIndexError(__pyx_t_11);
17388  __PYX_ERR(0, 798, __pyx_L1_error)
17389  }
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17391 
17392  /* "subsurfaceTransportFunctions.pyx":799
17393  * for k in range(x.shape[1]):
17394  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17395  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0]) # <<<<<<<<<<<<<<
17396  * v[eN,k,2]=zvelocity
17397  * else:
17398  */
17399  __pyx_t_36 = __pyx_v_eN;
17400  __pyx_t_37 = __pyx_v_k;
17401  __pyx_t_38 = 0;
17402  __pyx_t_11 = -1;
17403  if (__pyx_t_36 < 0) {
17404  __pyx_t_36 += __pyx_pybuffernd_x.diminfo[0].shape;
17405  if (unlikely(__pyx_t_36 < 0)) __pyx_t_11 = 0;
17406  } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_11 = 0;
17407  if (__pyx_t_37 < 0) {
17408  __pyx_t_37 += __pyx_pybuffernd_x.diminfo[1].shape;
17409  if (unlikely(__pyx_t_37 < 0)) __pyx_t_11 = 1;
17410  } else if (unlikely(__pyx_t_37 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_11 = 1;
17411  if (__pyx_t_38 < 0) {
17412  __pyx_t_38 += __pyx_pybuffernd_x.diminfo[2].shape;
17413  if (unlikely(__pyx_t_38 < 0)) __pyx_t_11 = 2;
17414  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_11 = 2;
17415  if (unlikely(__pyx_t_11 != -1)) {
17416  __Pyx_RaiseBufferIndexError(__pyx_t_11);
17417  __PYX_ERR(0, 799, __pyx_L1_error)
17418  }
17419  __pyx_t_39 = __pyx_v_eN;
17420  __pyx_t_40 = __pyx_v_k;
17421  __pyx_t_41 = 1;
17422  __pyx_t_11 = -1;
17423  if (__pyx_t_39 < 0) {
17424  __pyx_t_39 += __pyx_pybuffernd_v.diminfo[0].shape;
17425  if (unlikely(__pyx_t_39 < 0)) __pyx_t_11 = 0;
17426  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_11 = 0;
17427  if (__pyx_t_40 < 0) {
17428  __pyx_t_40 += __pyx_pybuffernd_v.diminfo[1].shape;
17429  if (unlikely(__pyx_t_40 < 0)) __pyx_t_11 = 1;
17430  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_11 = 1;
17431  if (__pyx_t_41 < 0) {
17432  __pyx_t_41 += __pyx_pybuffernd_v.diminfo[2].shape;
17433  if (unlikely(__pyx_t_41 < 0)) __pyx_t_11 = 2;
17434  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_11 = 2;
17435  if (unlikely(__pyx_t_11 != -1)) {
17436  __Pyx_RaiseBufferIndexError(__pyx_t_11);
17437  __PYX_ERR(0, 799, __pyx_L1_error)
17438  }
17439  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_39, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_40, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_41, __pyx_pybuffernd_v.diminfo[2].strides) = ((2.0 * __pyx_v_pi) * (__pyx_v_yc - (*__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_x.rcbuffer->pybuffer.buf, __pyx_t_36, __pyx_pybuffernd_x.diminfo[0].strides, __pyx_t_37, __pyx_pybuffernd_x.diminfo[1].strides, __pyx_t_38, __pyx_pybuffernd_x.diminfo[2].strides))));
17440 
17441  /* "subsurfaceTransportFunctions.pyx":800
17442  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17443  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17444  * v[eN,k,2]=zvelocity # <<<<<<<<<<<<<<
17445  * else:
17446  * assert v.shape[2] == 2
17447  */
17448  __pyx_t_42 = __pyx_v_eN;
17449  __pyx_t_43 = __pyx_v_k;
17450  __pyx_t_44 = 2;
17451  __pyx_t_11 = -1;
17452  if (__pyx_t_42 < 0) {
17453  __pyx_t_42 += __pyx_pybuffernd_v.diminfo[0].shape;
17454  if (unlikely(__pyx_t_42 < 0)) __pyx_t_11 = 0;
17455  } else if (unlikely(__pyx_t_42 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_11 = 0;
17456  if (__pyx_t_43 < 0) {
17457  __pyx_t_43 += __pyx_pybuffernd_v.diminfo[1].shape;
17458  if (unlikely(__pyx_t_43 < 0)) __pyx_t_11 = 1;
17459  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_11 = 1;
17460  if (__pyx_t_44 < 0) {
17461  __pyx_t_44 += __pyx_pybuffernd_v.diminfo[2].shape;
17462  if (unlikely(__pyx_t_44 < 0)) __pyx_t_11 = 2;
17463  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_11 = 2;
17464  if (unlikely(__pyx_t_11 != -1)) {
17465  __Pyx_RaiseBufferIndexError(__pyx_t_11);
17466  __PYX_ERR(0, 800, __pyx_L1_error)
17467  }
17468  *__Pyx_BufPtrStrided3d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_42, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_43, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_44, __pyx_pybuffernd_v.diminfo[2].strides) = __pyx_v_zvelocity;
17469  }
17470  }
17471  }
17472  __pyx_L4:;
17473 
17474  /* "subsurfaceTransportFunctions.pyx":787
17475  * cdef double pi
17476  * pi = M_PI
17477  * if v.shape[2] == 3: # <<<<<<<<<<<<<<
17478  * if transient == 1:
17479  * for eN in range(x.shape[0]):
17480  */
17481  goto __pyx_L3;
17482  }
17483 
17484  /* "subsurfaceTransportFunctions.pyx":802
17485  * v[eN,k,2]=zvelocity
17486  * else:
17487  * assert v.shape[2] == 2 # <<<<<<<<<<<<<<
17488  * if transient == 1:
17489  * for eN in range(x.shape[0]):
17490  */
17491  /*else*/ {
17492  #ifndef CYTHON_WITHOUT_ASSERTIONS
17493  if (unlikely(!Py_OptimizeFlag)) {
17494  if (unlikely(!(((__pyx_v_v->dimensions[2]) == 2) != 0))) {
17495  PyErr_SetNone(PyExc_AssertionError);
17496  __PYX_ERR(0, 802, __pyx_L1_error)
17497  }
17498  }
17499  #endif
17500 
17501  /* "subsurfaceTransportFunctions.pyx":803
17502  * else:
17503  * assert v.shape[2] == 2
17504  * if transient == 1: # <<<<<<<<<<<<<<
17505  * for eN in range(x.shape[0]):
17506  * for k in range(x.shape[1]):
17507  */
17508  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
17509  if (__pyx_t_1) {
17510 
17511  /* "subsurfaceTransportFunctions.pyx":804
17512  * assert v.shape[2] == 2
17513  * if transient == 1:
17514  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
17515  * for k in range(x.shape[1]):
17516  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17517  */
17518  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
17519  __pyx_t_3 = __pyx_t_2;
17520  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
17521  __pyx_v_eN = __pyx_t_4;
17522 
17523  /* "subsurfaceTransportFunctions.pyx":805
17524  * if transient == 1:
17525  * for eN in range(x.shape[0]):
17526  * for k in range(x.shape[1]): # <<<<<<<<<<<<<<
17527  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
17528  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17529  */
17530  __pyx_t_5 = (__pyx_v_x->dimensions[1]);
17531  __pyx_t_6 = __pyx_t_5;
17532  for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) {
17533  __pyx_v_k = __pyx_t_7;
17534 
17535  /* "subsurfaceTransportFunctions.pyx":806
17536  * for eN in range(x.shape[0]):
17537  * for k in range(x.shape[1]):
17538  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc) # <<<<<<<<<<<<<<
17539  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
17540  * v[eN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
17541  */
17542  __pyx_t_45 = __pyx_v_eN;
17543  __pyx_t_46 = __pyx_v_k;
17544  __pyx_t_47 = 1;
17545  __pyx_t_11 = -1;
17546  if (__pyx_t_45 < 0) {
17547  __pyx_t_45 += __pyx_pybuffernd_x.diminfo[0].shape;
17548  if (unlikely(__pyx_t_45 < 0)) __pyx_t_11 = 0;
17549  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_11 = 0;
17550  if (__pyx_t_46 < 0) {
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17819  * double tForReversal,
17820  */
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17850  *
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17854  * double tForReversal,
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18184  * for ebN in range(x.shape[1]):
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18193 
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18195  * for ebN in range(x.shape[1]):
18196  * for k in range(x.shape[2]):
18197  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
18198  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18199  * v[eN,ebN,k,2]=zvelocity
18200  */
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18252 
18253  /* "subsurfaceTransportFunctions.pyx":833
18254  * for k in range(x.shape[2]):
18255  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18256  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
18257  * v[eN,ebN,k,2]=zvelocity
18258  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18259  */
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18261  __pyx_t_21 = __pyx_v_ebN;
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18264  __pyx_t_15 = -1;
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18266  __pyx_t_20 += __pyx_pybuffernd_x.diminfo[0].shape;
18267  if (unlikely(__pyx_t_20 < 0)) __pyx_t_15 = 0;
18268  } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
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18287  __pyx_t_26 = __pyx_v_k;
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18289  __pyx_t_15 = -1;
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18293  } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
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18297  } else if (unlikely(__pyx_t_25 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
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18301  } else if (unlikely(__pyx_t_26 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
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18305  } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
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18311 
18312  /* "subsurfaceTransportFunctions.pyx":834
18313  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18314  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18315  * v[eN,ebN,k,2]=zvelocity # <<<<<<<<<<<<<<
18316  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18317  * else:
18318  */
18319  __pyx_t_28 = __pyx_v_eN;
18320  __pyx_t_29 = __pyx_v_ebN;
18321  __pyx_t_30 = __pyx_v_k;
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18323  __pyx_t_15 = -1;
18324  if (__pyx_t_28 < 0) {
18325  __pyx_t_28 += __pyx_pybuffernd_v.diminfo[0].shape;
18326  if (unlikely(__pyx_t_28 < 0)) __pyx_t_15 = 0;
18327  } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
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18332  if (__pyx_t_30 < 0) {
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18336  if (__pyx_t_31 < 0) {
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18345 
18346  /* "subsurfaceTransportFunctions.pyx":835
18347  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18348  * v[eN,ebN,k,2]=zvelocity
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18350  * else:
18351  * for eN in range(x.shape[0]):
18352  */
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18364  PyTuple_SET_ITEM(__pyx_t_35, 1, __pyx_t_33);
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18392  }
18393 
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18395  * pi = M_PI
18396  * if v.shape[v.ndim-1] == 3:
18397  * if transient == 1: # <<<<<<<<<<<<<<
18398  * for eN in range(x.shape[0]):
18399  * for ebN in range(x.shape[1]):
18400  */
18401  goto __pyx_L4;
18402  }
18403 
18404  /* "subsurfaceTransportFunctions.pyx":837
18405  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18406  * else:
18407  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
18408  * for ebN in range(x.shape[1]):
18409  * for k in range(x.shape[2]):
18410  */
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18413  __pyx_t_3 = __pyx_t_2;
18414  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
18415  __pyx_v_eN = __pyx_t_4;
18416 
18417  /* "subsurfaceTransportFunctions.pyx":838
18418  * else:
18419  * for eN in range(x.shape[0]):
18420  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
18421  * for k in range(x.shape[2]):
18422  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18423  */
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18425  __pyx_t_6 = __pyx_t_5;
18426  for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) {
18427  __pyx_v_ebN = __pyx_t_7;
18428 
18429  /* "subsurfaceTransportFunctions.pyx":839
18430  * for eN in range(x.shape[0]):
18431  * for ebN in range(x.shape[1]):
18432  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
18433  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18434  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18435  */
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18437  __pyx_t_9 = __pyx_t_8;
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18439  __pyx_v_k = __pyx_t_10;
18440 
18441  /* "subsurfaceTransportFunctions.pyx":840
18442  * for ebN in range(x.shape[1]):
18443  * for k in range(x.shape[2]):
18444  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
18445  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18446  * v[eN,ebN,k,2]=zvelocity
18447  */
18448  __pyx_t_38 = __pyx_v_eN;
18449  __pyx_t_39 = __pyx_v_ebN;
18450  __pyx_t_40 = __pyx_v_k;
18451  __pyx_t_41 = 1;
18452  __pyx_t_15 = -1;
18453  if (__pyx_t_38 < 0) {
18454  __pyx_t_38 += __pyx_pybuffernd_x.diminfo[0].shape;
18455  if (unlikely(__pyx_t_38 < 0)) __pyx_t_15 = 0;
18456  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
18457  if (__pyx_t_39 < 0) {
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18460  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
18461  if (__pyx_t_40 < 0) {
18462  __pyx_t_40 += __pyx_pybuffernd_x.diminfo[2].shape;
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18464  } else if (unlikely(__pyx_t_40 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_15 = 2;
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18468  } else if (unlikely(__pyx_t_41 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_15 = 3;
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18470  __Pyx_RaiseBufferIndexError(__pyx_t_15);
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18475  __pyx_t_44 = __pyx_v_k;
18476  __pyx_t_45 = 0;
18477  __pyx_t_15 = -1;
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18480  if (unlikely(__pyx_t_42 < 0)) __pyx_t_15 = 0;
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18482  if (__pyx_t_43 < 0) {
18483  __pyx_t_43 += __pyx_pybuffernd_v.diminfo[1].shape;
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18485  } else if (unlikely(__pyx_t_43 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
18486  if (__pyx_t_44 < 0) {
18487  __pyx_t_44 += __pyx_pybuffernd_v.diminfo[2].shape;
18488  if (unlikely(__pyx_t_44 < 0)) __pyx_t_15 = 2;
18489  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
18490  if (__pyx_t_45 < 0) {
18491  __pyx_t_45 += __pyx_pybuffernd_v.diminfo[3].shape;
18492  if (unlikely(__pyx_t_45 < 0)) __pyx_t_15 = 3;
18493  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
18494  if (unlikely(__pyx_t_15 != -1)) {
18495  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18496  __PYX_ERR(0, 840, __pyx_L1_error)
18497  }
18498  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_42, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_43, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_44, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_45, __pyx_pybuffernd_v.diminfo[3].strides) = ((2.0 * __pyx_v_pi) * ((*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_x.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_x.diminfo[0].strides, __pyx_t_39, __pyx_pybuffernd_x.diminfo[1].strides, __pyx_t_40, __pyx_pybuffernd_x.diminfo[2].strides, __pyx_t_41, __pyx_pybuffernd_x.diminfo[3].strides)) - __pyx_v_xc));
18499 
18500  /* "subsurfaceTransportFunctions.pyx":841
18501  * for k in range(x.shape[2]):
18502  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18503  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
18504  * v[eN,ebN,k,2]=zvelocity
18505  * else:
18506  */
18507  __pyx_t_46 = __pyx_v_eN;
18508  __pyx_t_47 = __pyx_v_ebN;
18509  __pyx_t_48 = __pyx_v_k;
18510  __pyx_t_49 = 0;
18511  __pyx_t_15 = -1;
18512  if (__pyx_t_46 < 0) {
18513  __pyx_t_46 += __pyx_pybuffernd_x.diminfo[0].shape;
18514  if (unlikely(__pyx_t_46 < 0)) __pyx_t_15 = 0;
18515  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
18516  if (__pyx_t_47 < 0) {
18517  __pyx_t_47 += __pyx_pybuffernd_x.diminfo[1].shape;
18518  if (unlikely(__pyx_t_47 < 0)) __pyx_t_15 = 1;
18519  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
18520  if (__pyx_t_48 < 0) {
18521  __pyx_t_48 += __pyx_pybuffernd_x.diminfo[2].shape;
18522  if (unlikely(__pyx_t_48 < 0)) __pyx_t_15 = 2;
18523  } else if (unlikely(__pyx_t_48 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_15 = 2;
18524  if (__pyx_t_49 < 0) {
18525  __pyx_t_49 += __pyx_pybuffernd_x.diminfo[3].shape;
18526  if (unlikely(__pyx_t_49 < 0)) __pyx_t_15 = 3;
18527  } else if (unlikely(__pyx_t_49 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_15 = 3;
18528  if (unlikely(__pyx_t_15 != -1)) {
18529  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18530  __PYX_ERR(0, 841, __pyx_L1_error)
18531  }
18532  __pyx_t_50 = __pyx_v_eN;
18533  __pyx_t_51 = __pyx_v_ebN;
18534  __pyx_t_52 = __pyx_v_k;
18535  __pyx_t_53 = 1;
18536  __pyx_t_15 = -1;
18537  if (__pyx_t_50 < 0) {
18538  __pyx_t_50 += __pyx_pybuffernd_v.diminfo[0].shape;
18539  if (unlikely(__pyx_t_50 < 0)) __pyx_t_15 = 0;
18540  } else if (unlikely(__pyx_t_50 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
18541  if (__pyx_t_51 < 0) {
18542  __pyx_t_51 += __pyx_pybuffernd_v.diminfo[1].shape;
18543  if (unlikely(__pyx_t_51 < 0)) __pyx_t_15 = 1;
18544  } else if (unlikely(__pyx_t_51 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
18545  if (__pyx_t_52 < 0) {
18546  __pyx_t_52 += __pyx_pybuffernd_v.diminfo[2].shape;
18547  if (unlikely(__pyx_t_52 < 0)) __pyx_t_15 = 2;
18548  } else if (unlikely(__pyx_t_52 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
18549  if (__pyx_t_53 < 0) {
18550  __pyx_t_53 += __pyx_pybuffernd_v.diminfo[3].shape;
18551  if (unlikely(__pyx_t_53 < 0)) __pyx_t_15 = 3;
18552  } else if (unlikely(__pyx_t_53 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
18553  if (unlikely(__pyx_t_15 != -1)) {
18554  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18555  __PYX_ERR(0, 841, __pyx_L1_error)
18556  }
18557  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_50, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_51, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_52, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_53, __pyx_pybuffernd_v.diminfo[3].strides) = ((2.0 * __pyx_v_pi) * (__pyx_v_yc - (*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_x.rcbuffer->pybuffer.buf, __pyx_t_46, __pyx_pybuffernd_x.diminfo[0].strides, __pyx_t_47, __pyx_pybuffernd_x.diminfo[1].strides, __pyx_t_48, __pyx_pybuffernd_x.diminfo[2].strides, __pyx_t_49, __pyx_pybuffernd_x.diminfo[3].strides))));
18558 
18559  /* "subsurfaceTransportFunctions.pyx":842
18560  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18561  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18562  * v[eN,ebN,k,2]=zvelocity # <<<<<<<<<<<<<<
18563  * else:
18564  * assert v.shape[v.ndim-1] == 2
18565  */
18566  __pyx_t_54 = __pyx_v_eN;
18567  __pyx_t_55 = __pyx_v_ebN;
18568  __pyx_t_56 = __pyx_v_k;
18569  __pyx_t_57 = 2;
18570  __pyx_t_15 = -1;
18571  if (__pyx_t_54 < 0) {
18572  __pyx_t_54 += __pyx_pybuffernd_v.diminfo[0].shape;
18573  if (unlikely(__pyx_t_54 < 0)) __pyx_t_15 = 0;
18574  } else if (unlikely(__pyx_t_54 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
18575  if (__pyx_t_55 < 0) {
18576  __pyx_t_55 += __pyx_pybuffernd_v.diminfo[1].shape;
18577  if (unlikely(__pyx_t_55 < 0)) __pyx_t_15 = 1;
18578  } else if (unlikely(__pyx_t_55 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
18579  if (__pyx_t_56 < 0) {
18580  __pyx_t_56 += __pyx_pybuffernd_v.diminfo[2].shape;
18581  if (unlikely(__pyx_t_56 < 0)) __pyx_t_15 = 2;
18582  } else if (unlikely(__pyx_t_56 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
18583  if (__pyx_t_57 < 0) {
18584  __pyx_t_57 += __pyx_pybuffernd_v.diminfo[3].shape;
18585  if (unlikely(__pyx_t_57 < 0)) __pyx_t_15 = 3;
18586  } else if (unlikely(__pyx_t_57 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
18587  if (unlikely(__pyx_t_15 != -1)) {
18588  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18589  __PYX_ERR(0, 842, __pyx_L1_error)
18590  }
18591  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_54, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_55, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_56, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_57, __pyx_pybuffernd_v.diminfo[3].strides) = __pyx_v_zvelocity;
18592  }
18593  }
18594  }
18595  }
18596  __pyx_L4:;
18597 
18598  /* "subsurfaceTransportFunctions.pyx":827
18599  * cdef double pi
18600  * pi = M_PI
18601  * if v.shape[v.ndim-1] == 3: # <<<<<<<<<<<<<<
18602  * if transient == 1:
18603  * for eN in range(x.shape[0]):
18604  */
18605  goto __pyx_L3;
18606  }
18607 
18608  /* "subsurfaceTransportFunctions.pyx":844
18609  * v[eN,ebN,k,2]=zvelocity
18610  * else:
18611  * assert v.shape[v.ndim-1] == 2 # <<<<<<<<<<<<<<
18612  * if transient == 1:
18613  * for eN in range(x.shape[0]):
18614  */
18615  /*else*/ {
18616  #ifndef CYTHON_WITHOUT_ASSERTIONS
18617  if (unlikely(!Py_OptimizeFlag)) {
18618  if (unlikely(!(((__pyx_v_v->dimensions[(__pyx_v_v->nd - 1)]) == 2) != 0))) {
18619  PyErr_SetNone(PyExc_AssertionError);
18620  __PYX_ERR(0, 844, __pyx_L1_error)
18621  }
18622  }
18623  #endif
18624 
18625  /* "subsurfaceTransportFunctions.pyx":845
18626  * else:
18627  * assert v.shape[v.ndim-1] == 2
18628  * if transient == 1: # <<<<<<<<<<<<<<
18629  * for eN in range(x.shape[0]):
18630  * for ebN in range(x.shape[1]):
18631  */
18632  __pyx_t_1 = ((__pyx_v_transient == 1) != 0);
18633  if (__pyx_t_1) {
18634 
18635  /* "subsurfaceTransportFunctions.pyx":846
18636  * assert v.shape[v.ndim-1] == 2
18637  * if transient == 1:
18638  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
18639  * for ebN in range(x.shape[1]):
18640  * for k in range(x.shape[2]):
18641  */
18642  __pyx_t_2 = (__pyx_v_x->dimensions[0]);
18643  __pyx_t_3 = __pyx_t_2;
18644  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
18645  __pyx_v_eN = __pyx_t_4;
18646 
18647  /* "subsurfaceTransportFunctions.pyx":847
18648  * if transient == 1:
18649  * for eN in range(x.shape[0]):
18650  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
18651  * for k in range(x.shape[2]):
18652  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18653  */
18654  __pyx_t_5 = (__pyx_v_x->dimensions[1]);
18655  __pyx_t_6 = __pyx_t_5;
18656  for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_6; __pyx_t_7+=1) {
18657  __pyx_v_ebN = __pyx_t_7;
18658 
18659  /* "subsurfaceTransportFunctions.pyx":848
18660  * for eN in range(x.shape[0]):
18661  * for ebN in range(x.shape[1]):
18662  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
18663  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18664  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18665  */
18666  __pyx_t_8 = (__pyx_v_x->dimensions[2]);
18667  __pyx_t_9 = __pyx_t_8;
18668  for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) {
18669  __pyx_v_k = __pyx_t_10;
18670 
18671  /* "subsurfaceTransportFunctions.pyx":849
18672  * for ebN in range(x.shape[1]):
18673  * for k in range(x.shape[2]):
18674  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
18675  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
18676  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18677  */
18678  __pyx_t_58 = __pyx_v_eN;
18679  __pyx_t_59 = __pyx_v_ebN;
18680  __pyx_t_60 = __pyx_v_k;
18681  __pyx_t_61 = 1;
18682  __pyx_t_15 = -1;
18683  if (__pyx_t_58 < 0) {
18684  __pyx_t_58 += __pyx_pybuffernd_x.diminfo[0].shape;
18685  if (unlikely(__pyx_t_58 < 0)) __pyx_t_15 = 0;
18686  } else if (unlikely(__pyx_t_58 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
18687  if (__pyx_t_59 < 0) {
18688  __pyx_t_59 += __pyx_pybuffernd_x.diminfo[1].shape;
18689  if (unlikely(__pyx_t_59 < 0)) __pyx_t_15 = 1;
18690  } else if (unlikely(__pyx_t_59 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
18691  if (__pyx_t_60 < 0) {
18692  __pyx_t_60 += __pyx_pybuffernd_x.diminfo[2].shape;
18693  if (unlikely(__pyx_t_60 < 0)) __pyx_t_15 = 2;
18694  } else if (unlikely(__pyx_t_60 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_15 = 2;
18695  if (__pyx_t_61 < 0) {
18696  __pyx_t_61 += __pyx_pybuffernd_x.diminfo[3].shape;
18697  if (unlikely(__pyx_t_61 < 0)) __pyx_t_15 = 3;
18698  } else if (unlikely(__pyx_t_61 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_15 = 3;
18699  if (unlikely(__pyx_t_15 != -1)) {
18700  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18701  __PYX_ERR(0, 849, __pyx_L1_error)
18702  }
18703  __pyx_t_62 = __pyx_v_eN;
18704  __pyx_t_63 = __pyx_v_ebN;
18705  __pyx_t_64 = __pyx_v_k;
18706  __pyx_t_65 = 0;
18707  __pyx_t_15 = -1;
18708  if (__pyx_t_62 < 0) {
18709  __pyx_t_62 += __pyx_pybuffernd_v.diminfo[0].shape;
18710  if (unlikely(__pyx_t_62 < 0)) __pyx_t_15 = 0;
18711  } else if (unlikely(__pyx_t_62 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
18712  if (__pyx_t_63 < 0) {
18713  __pyx_t_63 += __pyx_pybuffernd_v.diminfo[1].shape;
18714  if (unlikely(__pyx_t_63 < 0)) __pyx_t_15 = 1;
18715  } else if (unlikely(__pyx_t_63 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
18716  if (__pyx_t_64 < 0) {
18717  __pyx_t_64 += __pyx_pybuffernd_v.diminfo[2].shape;
18718  if (unlikely(__pyx_t_64 < 0)) __pyx_t_15 = 2;
18719  } else if (unlikely(__pyx_t_64 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
18720  if (__pyx_t_65 < 0) {
18721  __pyx_t_65 += __pyx_pybuffernd_v.diminfo[3].shape;
18722  if (unlikely(__pyx_t_65 < 0)) __pyx_t_15 = 3;
18723  } else if (unlikely(__pyx_t_65 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
18724  if (unlikely(__pyx_t_15 != -1)) {
18725  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18726  __PYX_ERR(0, 849, __pyx_L1_error)
18727  }
18728  *__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_v.rcbuffer->pybuffer.buf, __pyx_t_62, __pyx_pybuffernd_v.diminfo[0].strides, __pyx_t_63, __pyx_pybuffernd_v.diminfo[1].strides, __pyx_t_64, __pyx_pybuffernd_v.diminfo[2].strides, __pyx_t_65, __pyx_pybuffernd_v.diminfo[3].strides) = ((2.0 * __pyx_v_pi) * ((*__Pyx_BufPtrStrided4d(__pyx_t_28subsurfaceTransportFunctions_DTYPE_t *, __pyx_pybuffernd_x.rcbuffer->pybuffer.buf, __pyx_t_58, __pyx_pybuffernd_x.diminfo[0].strides, __pyx_t_59, __pyx_pybuffernd_x.diminfo[1].strides, __pyx_t_60, __pyx_pybuffernd_x.diminfo[2].strides, __pyx_t_61, __pyx_pybuffernd_x.diminfo[3].strides)) - __pyx_v_xc));
18729 
18730  /* "subsurfaceTransportFunctions.pyx":850
18731  * for k in range(x.shape[2]):
18732  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18733  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
18734  * v[eN,ebN,k,:]*=(tForReversal-t)/(tForReversal-0.0)*clock
18735  * else:
18736  */
18737  __pyx_t_66 = __pyx_v_eN;
18738  __pyx_t_67 = __pyx_v_ebN;
18739  __pyx_t_68 = __pyx_v_k;
18740  __pyx_t_69 = 0;
18741  __pyx_t_15 = -1;
18742  if (__pyx_t_66 < 0) {
18743  __pyx_t_66 += __pyx_pybuffernd_x.diminfo[0].shape;
18744  if (unlikely(__pyx_t_66 < 0)) __pyx_t_15 = 0;
18745  } else if (unlikely(__pyx_t_66 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
18746  if (__pyx_t_67 < 0) {
18747  __pyx_t_67 += __pyx_pybuffernd_x.diminfo[1].shape;
18748  if (unlikely(__pyx_t_67 < 0)) __pyx_t_15 = 1;
18749  } else if (unlikely(__pyx_t_67 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
18750  if (__pyx_t_68 < 0) {
18751  __pyx_t_68 += __pyx_pybuffernd_x.diminfo[2].shape;
18752  if (unlikely(__pyx_t_68 < 0)) __pyx_t_15 = 2;
18753  } else if (unlikely(__pyx_t_68 >= __pyx_pybuffernd_x.diminfo[2].shape)) __pyx_t_15 = 2;
18754  if (__pyx_t_69 < 0) {
18755  __pyx_t_69 += __pyx_pybuffernd_x.diminfo[3].shape;
18756  if (unlikely(__pyx_t_69 < 0)) __pyx_t_15 = 3;
18757  } else if (unlikely(__pyx_t_69 >= __pyx_pybuffernd_x.diminfo[3].shape)) __pyx_t_15 = 3;
18758  if (unlikely(__pyx_t_15 != -1)) {
18759  __Pyx_RaiseBufferIndexError(__pyx_t_15);
18760  __PYX_ERR(0, 850, __pyx_L1_error)
18761  }
18762  __pyx_t_70 = __pyx_v_eN;
18763  __pyx_t_71 = __pyx_v_ebN;
18764  __pyx_t_72 = __pyx_v_k;
18765  __pyx_t_73 = 1;
18766  __pyx_t_15 = -1;
18767  if (__pyx_t_70 < 0) {
18768  __pyx_t_70 += __pyx_pybuffernd_v.diminfo[0].shape;
18769  if (unlikely(__pyx_t_70 < 0)) __pyx_t_15 = 0;
18770  } else if (unlikely(__pyx_t_70 >= __pyx_pybuffernd_v.diminfo[0].shape)) __pyx_t_15 = 0;
18771  if (__pyx_t_71 < 0) {
18772  __pyx_t_71 += __pyx_pybuffernd_v.diminfo[1].shape;
18773  if (unlikely(__pyx_t_71 < 0)) __pyx_t_15 = 1;
18774  } else if (unlikely(__pyx_t_71 >= __pyx_pybuffernd_v.diminfo[1].shape)) __pyx_t_15 = 1;
18775  if (__pyx_t_72 < 0) {
18776  __pyx_t_72 += __pyx_pybuffernd_v.diminfo[2].shape;
18777  if (unlikely(__pyx_t_72 < 0)) __pyx_t_15 = 2;
18778  } else if (unlikely(__pyx_t_72 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
18779  if (__pyx_t_73 < 0) {
18780  __pyx_t_73 += __pyx_pybuffernd_v.diminfo[3].shape;
18781  if (unlikely(__pyx_t_73 < 0)) __pyx_t_15 = 3;
18782  } else if (unlikely(__pyx_t_73 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
18783  if (unlikely(__pyx_t_15 != -1)) {
18784  __Pyx_RaiseBufferIndexError(__pyx_t_15);
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18790  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18791  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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18862  * for eN in range(x.shape[0]):
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18944  * for k in range(x.shape[2]):
18945  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
18946  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
18947  *
18948  * def helicalElementVelocityEval3(int transient,
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19014  * double tForReversal,
19015  */
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19045  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
19046  *
19047  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
19048  * double t,
19049  * double tForReversal,
19050  */
19051 
19052 /* Python wrapper */
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19413  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
19414  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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19487  * for eN in range(x.shape[0]):
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19494  * v[eN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
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19497  * for k in range(x.shape[1]):
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19522  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
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19546  __pyx_t_34 = __pyx_v_k;
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19548  __pyx_t_11 = -1;
19549  if (__pyx_t_33 < 0) {
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19568  * for k in range(x.shape[1]):
19569  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
19570  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0]) # <<<<<<<<<<<<<<
19571  * v[eN,k,2]=zVelocity
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19615 
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19617  * v[eN,k,0]=2.0*pi*(x[eN,k,1]-xc)
19618  * v[eN,k,1]=2.0*pi*(yc-x[eN,k,0])
19619  * v[eN,k,2]=zVelocity # <<<<<<<<<<<<<<
19620  *
19621  * def helicalElementVelocityEval4(int transient,
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19651  *
19652  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
19653  * double t,
19654  * double tForReversal,
19655  */
19656 
19657  /* function exit code */
19658  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
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19685  * v[eN,k,2]=zVelocity
19686  *
19687  * def helicalElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
19688  * double t,
19689  * double tForReversal,
19690  */
19691 
19692 /* Python wrapper */
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19710  PyObject* values[9] = {0,0,0,0,0,0,0,0,0};
19711  if (unlikely(__pyx_kwds)) {
19712  Py_ssize_t kw_args;
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19714  switch (pos_args) {
19715  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
19716  CYTHON_FALLTHROUGH;
19717  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
19718  CYTHON_FALLTHROUGH;
19719  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
19720  CYTHON_FALLTHROUGH;
19721  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
19722  CYTHON_FALLTHROUGH;
19723  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
19724  CYTHON_FALLTHROUGH;
19725  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
19726  CYTHON_FALLTHROUGH;
19727  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
19728  CYTHON_FALLTHROUGH;
19729  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
19730  CYTHON_FALLTHROUGH;
19731  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
19732  CYTHON_FALLTHROUGH;
19733  case 0: break;
19734  default: goto __pyx_L5_argtuple_error;
19735  }
19736  kw_args = PyDict_Size(__pyx_kwds);
19737  switch (pos_args) {
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19739  if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_transient)) != 0)) kw_args--;
19740  else goto __pyx_L5_argtuple_error;
19741  CYTHON_FALLTHROUGH;
19742  case 1:
19743  if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_t)) != 0)) kw_args--;
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19745  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 1); __PYX_ERR(0, 884, __pyx_L3_error)
19746  }
19747  CYTHON_FALLTHROUGH;
19748  case 2:
19749  if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_tForReversal)) != 0)) kw_args--;
19750  else {
19751  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 2); __PYX_ERR(0, 884, __pyx_L3_error)
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19753  CYTHON_FALLTHROUGH;
19754  case 3:
19755  if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clock)) != 0)) kw_args--;
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19757  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 3); __PYX_ERR(0, 884, __pyx_L3_error)
19758  }
19759  CYTHON_FALLTHROUGH;
19760  case 4:
19761  if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_zVelocity)) != 0)) kw_args--;
19762  else {
19763  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 4); __PYX_ERR(0, 884, __pyx_L3_error)
19764  }
19765  CYTHON_FALLTHROUGH;
19766  case 5:
19767  if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_xc)) != 0)) kw_args--;
19768  else {
19769  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 5); __PYX_ERR(0, 884, __pyx_L3_error)
19770  }
19771  CYTHON_FALLTHROUGH;
19772  case 6:
19773  if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_yc)) != 0)) kw_args--;
19774  else {
19775  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 6); __PYX_ERR(0, 884, __pyx_L3_error)
19776  }
19777  CYTHON_FALLTHROUGH;
19778  case 7:
19779  if (likely((values[7] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_x)) != 0)) kw_args--;
19780  else {
19781  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 7); __PYX_ERR(0, 884, __pyx_L3_error)
19782  }
19783  CYTHON_FALLTHROUGH;
19784  case 8:
19785  if (likely((values[8] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_v)) != 0)) kw_args--;
19786  else {
19787  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, 8); __PYX_ERR(0, 884, __pyx_L3_error)
19788  }
19789  }
19790  if (unlikely(kw_args > 0)) {
19791  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "helicalElementVelocityEval4") < 0)) __PYX_ERR(0, 884, __pyx_L3_error)
19792  }
19793  } else if (PyTuple_GET_SIZE(__pyx_args) != 9) {
19794  goto __pyx_L5_argtuple_error;
19795  } else {
19796  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
19797  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
19798  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
19799  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
19800  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
19801  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
19802  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
19803  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
19804  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
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19809  __pyx_v_clock = __pyx_PyFloat_AsDouble(values[3]); if (unlikely((__pyx_v_clock == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 887, __pyx_L3_error)
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19816  goto __pyx_L4_argument_unpacking_done;
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19818  __Pyx_RaiseArgtupleInvalid("helicalElementVelocityEval4", 1, 9, 9, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 884, __pyx_L3_error)
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19827 
19828  /* function exit code */
19829  goto __pyx_L0;
19830  __pyx_L1_error:;
19831  __pyx_r = NULL;
19832  __pyx_L0:;
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19836 
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19839  int __pyx_v_ebN;
19840  int __pyx_v_k;
19841  double __pyx_v_pi;
19842  __Pyx_LocalBuf_ND __pyx_pybuffernd_v;
19843  __Pyx_Buffer __pyx_pybuffer_v;
19844  __Pyx_LocalBuf_ND __pyx_pybuffernd_x;
19845  __Pyx_Buffer __pyx_pybuffer_x;
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19852  npy_intp __pyx_t_5;
19853  npy_intp __pyx_t_6;
19854  int __pyx_t_7;
19855  npy_intp __pyx_t_8;
19856  npy_intp __pyx_t_9;
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19858  Py_ssize_t __pyx_t_11;
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19860  Py_ssize_t __pyx_t_13;
19861  Py_ssize_t __pyx_t_14;
19862  int __pyx_t_15;
19863  Py_ssize_t __pyx_t_16;
19864  Py_ssize_t __pyx_t_17;
19865  Py_ssize_t __pyx_t_18;
19866  Py_ssize_t __pyx_t_19;
19867  Py_ssize_t __pyx_t_20;
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19869  Py_ssize_t __pyx_t_22;
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19871  Py_ssize_t __pyx_t_24;
19872  Py_ssize_t __pyx_t_25;
19873  Py_ssize_t __pyx_t_26;
19874  Py_ssize_t __pyx_t_27;
19875  Py_ssize_t __pyx_t_28;
19876  Py_ssize_t __pyx_t_29;
19877  Py_ssize_t __pyx_t_30;
19878  Py_ssize_t __pyx_t_31;
19879  PyObject *__pyx_t_32 = NULL;
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19881  PyObject *__pyx_t_34 = NULL;
19882  PyObject *__pyx_t_35 = NULL;
19883  double __pyx_t_36;
19884  double __pyx_t_37;
19885  Py_ssize_t __pyx_t_38;
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19902  Py_ssize_t __pyx_t_55;
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19926  * cdef int eN,ebN,k
19927  * cdef double pi
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19935  * cdef double pi
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19945  * pi = M_PI
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19955 
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19957  * if transient == 1:
19958  * for eN in range(x.shape[0]):
19959  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
19960  * for k in range(x.shape[2]):
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19963  __pyx_t_5 = (__pyx_v_x->dimensions[1]);
19964  __pyx_t_6 = __pyx_t_5;
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19966  __pyx_v_ebN = __pyx_t_7;
19967 
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19969  * for eN in range(x.shape[0]):
19970  * for ebN in range(x.shape[1]):
19971  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
19972  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
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19979 
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19981  * for ebN in range(x.shape[1]):
19982  * for k in range(x.shape[2]):
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20001  __pyx_t_13 += __pyx_pybuffernd_x.diminfo[2].shape;
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20004  if (__pyx_t_14 < 0) {
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20014  __pyx_t_18 = __pyx_v_k;
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20026  __pyx_t_18 += __pyx_pybuffernd_v.diminfo[2].shape;
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20038 
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20040  * for k in range(x.shape[2]):
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20042  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
20043  * v[eN,ebN,k,2]=zVelocity
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20097 
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20099  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
20100  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
20101  * v[eN,ebN,k,2]=zVelocity # <<<<<<<<<<<<<<
20102  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
20103  * else:
20104  */
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20131 
20132  /* "subsurfaceTransportFunctions.pyx":902
20133  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
20134  * v[eN,ebN,k,2]=zVelocity
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20136  * else:
20137  * for eN in range(x.shape[0]):
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20179 
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20181  * cdef double pi
20182  * pi = M_PI
20183  * if transient == 1: # <<<<<<<<<<<<<<
20184  * for eN in range(x.shape[0]):
20185  * for ebN in range(x.shape[1]):
20186  */
20187  goto __pyx_L3;
20188  }
20189 
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20191  * v[eN,ebN,k,:]*=clock*cos(pi*t/(tForReversal*2.0))
20192  * else:
20193  * for eN in range(x.shape[0]): # <<<<<<<<<<<<<<
20194  * for ebN in range(x.shape[1]):
20195  * for k in range(x.shape[2]):
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20202 
20203  /* "subsurfaceTransportFunctions.pyx":905
20204  * else:
20205  * for eN in range(x.shape[0]):
20206  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
20207  * for k in range(x.shape[2]):
20208  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
20209  */
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20213  __pyx_v_ebN = __pyx_t_7;
20214 
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20216  * for eN in range(x.shape[0]):
20217  * for ebN in range(x.shape[1]):
20218  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
20219  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
20220  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
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20226 
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20228  * for ebN in range(x.shape[1]):
20229  * for k in range(x.shape[2]):
20230  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc) # <<<<<<<<<<<<<<
20231  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
20232  * v[eN,ebN,k,2]=zVelocity
20233  */
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20235  __pyx_t_39 = __pyx_v_ebN;
20236  __pyx_t_40 = __pyx_v_k;
20237  __pyx_t_41 = 1;
20238  __pyx_t_15 = -1;
20239  if (__pyx_t_38 < 0) {
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20241  if (unlikely(__pyx_t_38 < 0)) __pyx_t_15 = 0;
20242  } else if (unlikely(__pyx_t_38 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
20243  if (__pyx_t_39 < 0) {
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20246  } else if (unlikely(__pyx_t_39 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
20247  if (__pyx_t_40 < 0) {
20248  __pyx_t_40 += __pyx_pybuffernd_x.diminfo[2].shape;
20249  if (unlikely(__pyx_t_40 < 0)) __pyx_t_15 = 2;
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20251  if (__pyx_t_41 < 0) {
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20256  __Pyx_RaiseBufferIndexError(__pyx_t_15);
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20260  __pyx_t_43 = __pyx_v_ebN;
20261  __pyx_t_44 = __pyx_v_k;
20262  __pyx_t_45 = 0;
20263  __pyx_t_15 = -1;
20264  if (__pyx_t_42 < 0) {
20265  __pyx_t_42 += __pyx_pybuffernd_v.diminfo[0].shape;
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20268  if (__pyx_t_43 < 0) {
20269  __pyx_t_43 += __pyx_pybuffernd_v.diminfo[1].shape;
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20272  if (__pyx_t_44 < 0) {
20273  __pyx_t_44 += __pyx_pybuffernd_v.diminfo[2].shape;
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20275  } else if (unlikely(__pyx_t_44 >= __pyx_pybuffernd_v.diminfo[2].shape)) __pyx_t_15 = 2;
20276  if (__pyx_t_45 < 0) {
20277  __pyx_t_45 += __pyx_pybuffernd_v.diminfo[3].shape;
20278  if (unlikely(__pyx_t_45 < 0)) __pyx_t_15 = 3;
20279  } else if (unlikely(__pyx_t_45 >= __pyx_pybuffernd_v.diminfo[3].shape)) __pyx_t_15 = 3;
20280  if (unlikely(__pyx_t_15 != -1)) {
20281  __Pyx_RaiseBufferIndexError(__pyx_t_15);
20282  __PYX_ERR(0, 907, __pyx_L1_error)
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20285 
20286  /* "subsurfaceTransportFunctions.pyx":908
20287  * for k in range(x.shape[2]):
20288  * v[eN,ebN,k,0]=2.0*pi*(x[eN,ebN,k,1]-xc)
20289  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0]) # <<<<<<<<<<<<<<
20290  * v[eN,ebN,k,2]=zVelocity
20291  *
20292  */
20293  __pyx_t_46 = __pyx_v_eN;
20294  __pyx_t_47 = __pyx_v_ebN;
20295  __pyx_t_48 = __pyx_v_k;
20296  __pyx_t_49 = 0;
20297  __pyx_t_15 = -1;
20298  if (__pyx_t_46 < 0) {
20299  __pyx_t_46 += __pyx_pybuffernd_x.diminfo[0].shape;
20300  if (unlikely(__pyx_t_46 < 0)) __pyx_t_15 = 0;
20301  } else if (unlikely(__pyx_t_46 >= __pyx_pybuffernd_x.diminfo[0].shape)) __pyx_t_15 = 0;
20302  if (__pyx_t_47 < 0) {
20303  __pyx_t_47 += __pyx_pybuffernd_x.diminfo[1].shape;
20304  if (unlikely(__pyx_t_47 < 0)) __pyx_t_15 = 1;
20305  } else if (unlikely(__pyx_t_47 >= __pyx_pybuffernd_x.diminfo[1].shape)) __pyx_t_15 = 1;
20306  if (__pyx_t_48 < 0) {
20307  __pyx_t_48 += __pyx_pybuffernd_x.diminfo[2].shape;
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20983  * cdef int eN,k,ebN
20984  * cdef double pi,one8
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20986  * one8 = 1.0/8.0
20987  * for eN in range(x.shape[0]):
20988  */
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20992  * cdef double pi,one8
20993  * pi = M_PI
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20995  * for eN in range(x.shape[0]):
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20997  */
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20999 
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21001  * pi = M_PI
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21004  * for ebN in range(x.shape[1]):
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21013  * one8 = 1.0/8.0
21014  * for eN in range(x.shape[0]):
21015  * for ebN in range(x.shape[1]): # <<<<<<<<<<<<<<
21016  * for k in range(x.shape[2]):
21017  * v[eN,ebN,k,0]= cos(pi*one8*t)*sin(2.0*pi*x[eN,ebN,k,1])*sin(pi*x[eN,ebN,k,0])*sin(pi*x[eN,ebN,k,0]);
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21025  * for eN in range(x.shape[0]):
21026  * for ebN in range(x.shape[1]):
21027  * for k in range(x.shape[2]): # <<<<<<<<<<<<<<
21028  * v[eN,ebN,k,0]= cos(pi*one8*t)*sin(2.0*pi*x[eN,ebN,k,1])*sin(pi*x[eN,ebN,k,0])*sin(pi*x[eN,ebN,k,0]);
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21037  * for ebN in range(x.shape[1]):
21038  * for k in range(x.shape[2]):
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21146  * for k in range(x.shape[2]):
21147  * v[eN,ebN,k,0]= cos(pi*one8*t)*sin(2.0*pi*x[eN,ebN,k,1])*sin(pi*x[eN,ebN,k,0])*sin(pi*x[eN,ebN,k,0]);
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21150  *
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21257  /* "subsurfaceTransportFunctions.pyx":924
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21544  * for i in range(ndim):
21545  * info.strides[i] = PyArray_STRIDES(self)[i]
21546  * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<<
21547  * else:
21548  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
21549  */
21550  (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]);
21551  }
21552 
21553  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":280
21554  * info.buf = PyArray_DATA(self)
21555  * info.ndim = ndim
21556  * if sizeof(npy_intp) != sizeof(Py_ssize_t): # <<<<<<<<<<<<<<
21557  * # Allocate new buffer for strides and shape info.
21558  * # This is allocated as one block, strides first.
21559  */
21560  goto __pyx_L9;
21561  }
21562 
21563  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":289
21564  * info.shape[i] = PyArray_DIMS(self)[i]
21565  * else:
21566  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<<
21567  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
21568  * info.suboffsets = NULL
21569  */
21570  /*else*/ {
21571  __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self));
21572 
21573  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":290
21574  * else:
21575  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
21576  * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<<
21577  * info.suboffsets = NULL
21578  * info.itemsize = PyArray_ITEMSIZE(self)
21579  */
21580  __pyx_v_info->shape = ((Py_ssize_t *)PyArray_DIMS(__pyx_v_self));
21581  }
21582  __pyx_L9:;
21583 
21584  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":291
21585  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
21586  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
21587  * info.suboffsets = NULL # <<<<<<<<<<<<<<
21588  * info.itemsize = PyArray_ITEMSIZE(self)
21589  * info.readonly = not PyArray_ISWRITEABLE(self)
21590  */
21591  __pyx_v_info->suboffsets = NULL;
21592 
21593  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":292
21594  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
21595  * info.suboffsets = NULL
21596  * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<<
21597  * info.readonly = not PyArray_ISWRITEABLE(self)
21598  *
21599  */
21600  __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self);
21601 
21602  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":293
21603  * info.suboffsets = NULL
21604  * info.itemsize = PyArray_ITEMSIZE(self)
21605  * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<<
21606  *
21607  * cdef int t
21608  */
21609  __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0));
21610 
21611  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":296
21612  *
21613  * cdef int t
21614  * cdef char* f = NULL # <<<<<<<<<<<<<<
21615  * cdef dtype descr = <dtype>PyArray_DESCR(self)
21616  * cdef int offset
21617  */
21618  __pyx_v_f = NULL;
21619 
21620  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":297
21621  * cdef int t
21622  * cdef char* f = NULL
21623  * cdef dtype descr = <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
21624  * cdef int offset
21625  *
21626  */
21627  __pyx_t_7 = PyArray_DESCR(__pyx_v_self);
21628  __pyx_t_3 = ((PyObject *)__pyx_t_7);
21629  __Pyx_INCREF(__pyx_t_3);
21630  __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3);
21631  __pyx_t_3 = 0;
21632 
21633  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":300
21634  * cdef int offset
21635  *
21636  * info.obj = self # <<<<<<<<<<<<<<
21637  *
21638  * if not PyDataType_HASFIELDS(descr):
21639  */
21640  __Pyx_INCREF(((PyObject *)__pyx_v_self));
21641  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
21642  __Pyx_GOTREF(__pyx_v_info->obj);
21643  __Pyx_DECREF(__pyx_v_info->obj);
21644  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);
21645 
21646  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":302
21647  * info.obj = self
21648  *
21649  * if not PyDataType_HASFIELDS(descr): # <<<<<<<<<<<<<<
21650  * t = descr.type_num
21651  * if ((descr.byteorder == c'>' and little_endian) or
21652  */
21653  __pyx_t_1 = ((!(PyDataType_HASFIELDS(__pyx_v_descr) != 0)) != 0);
21654  if (__pyx_t_1) {
21655 
21656  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":303
21657  *
21658  * if not PyDataType_HASFIELDS(descr):
21659  * t = descr.type_num # <<<<<<<<<<<<<<
21660  * if ((descr.byteorder == c'>' and little_endian) or
21661  * (descr.byteorder == c'<' and not little_endian)):
21662  */
21663  __pyx_t_4 = __pyx_v_descr->type_num;
21664  __pyx_v_t = __pyx_t_4;
21665 
21666  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":304
21667  * if not PyDataType_HASFIELDS(descr):
21668  * t = descr.type_num
21669  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21670  * (descr.byteorder == c'<' and not little_endian)):
21671  * raise ValueError(u"Non-native byte order not supported")
21672  */
21673  __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0);
21674  if (!__pyx_t_2) {
21675  goto __pyx_L15_next_or;
21676  } else {
21677  }
21678  __pyx_t_2 = (__pyx_v_little_endian != 0);
21679  if (!__pyx_t_2) {
21680  } else {
21681  __pyx_t_1 = __pyx_t_2;
21682  goto __pyx_L14_bool_binop_done;
21683  }
21684  __pyx_L15_next_or:;
21685 
21686  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":305
21687  * t = descr.type_num
21688  * if ((descr.byteorder == c'>' and little_endian) or
21689  * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<<
21690  * raise ValueError(u"Non-native byte order not supported")
21691  * if t == NPY_BYTE: f = "b"
21692  */
21693  __pyx_t_2 = ((__pyx_v_descr->byteorder == '<') != 0);
21694  if (__pyx_t_2) {
21695  } else {
21696  __pyx_t_1 = __pyx_t_2;
21697  goto __pyx_L14_bool_binop_done;
21698  }
21699  __pyx_t_2 = ((!(__pyx_v_little_endian != 0)) != 0);
21700  __pyx_t_1 = __pyx_t_2;
21701  __pyx_L14_bool_binop_done:;
21702 
21703  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":304
21704  * if not PyDataType_HASFIELDS(descr):
21705  * t = descr.type_num
21706  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21707  * (descr.byteorder == c'<' and not little_endian)):
21708  * raise ValueError(u"Non-native byte order not supported")
21709  */
21710  if (unlikely(__pyx_t_1)) {
21711 
21712  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":306
21713  * if ((descr.byteorder == c'>' and little_endian) or
21714  * (descr.byteorder == c'<' and not little_endian)):
21715  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
21716  * if t == NPY_BYTE: f = "b"
21717  * elif t == NPY_UBYTE: f = "B"
21718  */
21719  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__4, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 306, __pyx_L1_error)
21720  __Pyx_GOTREF(__pyx_t_3);
21721  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
21722  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
21723  __PYX_ERR(1, 306, __pyx_L1_error)
21724 
21725  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":304
21726  * if not PyDataType_HASFIELDS(descr):
21727  * t = descr.type_num
21728  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
21729  * (descr.byteorder == c'<' and not little_endian)):
21730  * raise ValueError(u"Non-native byte order not supported")
21731  */
21732  }
21733 
21734  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":307
21735  * (descr.byteorder == c'<' and not little_endian)):
21736  * raise ValueError(u"Non-native byte order not supported")
21737  * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<<
21738  * elif t == NPY_UBYTE: f = "B"
21739  * elif t == NPY_SHORT: f = "h"
21740  */
21741  switch (__pyx_v_t) {
21742  case NPY_BYTE:
21743  __pyx_v_f = ((char *)"b");
21744  break;
21745  case NPY_UBYTE:
21746 
21747  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":308
21748  * raise ValueError(u"Non-native byte order not supported")
21749  * if t == NPY_BYTE: f = "b"
21750  * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<<
21751  * elif t == NPY_SHORT: f = "h"
21752  * elif t == NPY_USHORT: f = "H"
21753  */
21754  __pyx_v_f = ((char *)"B");
21755  break;
21756  case NPY_SHORT:
21757 
21758  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":309
21759  * if t == NPY_BYTE: f = "b"
21760  * elif t == NPY_UBYTE: f = "B"
21761  * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<<
21762  * elif t == NPY_USHORT: f = "H"
21763  * elif t == NPY_INT: f = "i"
21764  */
21765  __pyx_v_f = ((char *)"h");
21766  break;
21767  case NPY_USHORT:
21768 
21769  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":310
21770  * elif t == NPY_UBYTE: f = "B"
21771  * elif t == NPY_SHORT: f = "h"
21772  * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<<
21773  * elif t == NPY_INT: f = "i"
21774  * elif t == NPY_UINT: f = "I"
21775  */
21776  __pyx_v_f = ((char *)"H");
21777  break;
21778  case NPY_INT:
21779 
21780  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":311
21781  * elif t == NPY_SHORT: f = "h"
21782  * elif t == NPY_USHORT: f = "H"
21783  * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<<
21784  * elif t == NPY_UINT: f = "I"
21785  * elif t == NPY_LONG: f = "l"
21786  */
21787  __pyx_v_f = ((char *)"i");
21788  break;
21789  case NPY_UINT:
21790 
21791  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":312
21792  * elif t == NPY_USHORT: f = "H"
21793  * elif t == NPY_INT: f = "i"
21794  * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<<
21795  * elif t == NPY_LONG: f = "l"
21796  * elif t == NPY_ULONG: f = "L"
21797  */
21798  __pyx_v_f = ((char *)"I");
21799  break;
21800  case NPY_LONG:
21801 
21802  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":313
21803  * elif t == NPY_INT: f = "i"
21804  * elif t == NPY_UINT: f = "I"
21805  * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<<
21806  * elif t == NPY_ULONG: f = "L"
21807  * elif t == NPY_LONGLONG: f = "q"
21808  */
21809  __pyx_v_f = ((char *)"l");
21810  break;
21811  case NPY_ULONG:
21812 
21813  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":314
21814  * elif t == NPY_UINT: f = "I"
21815  * elif t == NPY_LONG: f = "l"
21816  * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<<
21817  * elif t == NPY_LONGLONG: f = "q"
21818  * elif t == NPY_ULONGLONG: f = "Q"
21819  */
21820  __pyx_v_f = ((char *)"L");
21821  break;
21822  case NPY_LONGLONG:
21823 
21824  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":315
21825  * elif t == NPY_LONG: f = "l"
21826  * elif t == NPY_ULONG: f = "L"
21827  * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<<
21828  * elif t == NPY_ULONGLONG: f = "Q"
21829  * elif t == NPY_FLOAT: f = "f"
21830  */
21831  __pyx_v_f = ((char *)"q");
21832  break;
21833  case NPY_ULONGLONG:
21834 
21835  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":316
21836  * elif t == NPY_ULONG: f = "L"
21837  * elif t == NPY_LONGLONG: f = "q"
21838  * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<<
21839  * elif t == NPY_FLOAT: f = "f"
21840  * elif t == NPY_DOUBLE: f = "d"
21841  */
21842  __pyx_v_f = ((char *)"Q");
21843  break;
21844  case NPY_FLOAT:
21845 
21846  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":317
21847  * elif t == NPY_LONGLONG: f = "q"
21848  * elif t == NPY_ULONGLONG: f = "Q"
21849  * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<<
21850  * elif t == NPY_DOUBLE: f = "d"
21851  * elif t == NPY_LONGDOUBLE: f = "g"
21852  */
21853  __pyx_v_f = ((char *)"f");
21854  break;
21855  case NPY_DOUBLE:
21856 
21857  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":318
21858  * elif t == NPY_ULONGLONG: f = "Q"
21859  * elif t == NPY_FLOAT: f = "f"
21860  * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<<
21861  * elif t == NPY_LONGDOUBLE: f = "g"
21862  * elif t == NPY_CFLOAT: f = "Zf"
21863  */
21864  __pyx_v_f = ((char *)"d");
21865  break;
21866  case NPY_LONGDOUBLE:
21867 
21868  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":319
21869  * elif t == NPY_FLOAT: f = "f"
21870  * elif t == NPY_DOUBLE: f = "d"
21871  * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<<
21872  * elif t == NPY_CFLOAT: f = "Zf"
21873  * elif t == NPY_CDOUBLE: f = "Zd"
21874  */
21875  __pyx_v_f = ((char *)"g");
21876  break;
21877  case NPY_CFLOAT:
21878 
21879  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":320
21880  * elif t == NPY_DOUBLE: f = "d"
21881  * elif t == NPY_LONGDOUBLE: f = "g"
21882  * elif t == NPY_CFLOAT: f = "Zf" # <<<<<<<<<<<<<<
21883  * elif t == NPY_CDOUBLE: f = "Zd"
21884  * elif t == NPY_CLONGDOUBLE: f = "Zg"
21885  */
21886  __pyx_v_f = ((char *)"Zf");
21887  break;
21888  case NPY_CDOUBLE:
21889 
21890  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":321
21891  * elif t == NPY_LONGDOUBLE: f = "g"
21892  * elif t == NPY_CFLOAT: f = "Zf"
21893  * elif t == NPY_CDOUBLE: f = "Zd" # <<<<<<<<<<<<<<
21894  * elif t == NPY_CLONGDOUBLE: f = "Zg"
21895  * elif t == NPY_OBJECT: f = "O"
21896  */
21897  __pyx_v_f = ((char *)"Zd");
21898  break;
21899  case NPY_CLONGDOUBLE:
21900 
21901  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":322
21902  * elif t == NPY_CFLOAT: f = "Zf"
21903  * elif t == NPY_CDOUBLE: f = "Zd"
21904  * elif t == NPY_CLONGDOUBLE: f = "Zg" # <<<<<<<<<<<<<<
21905  * elif t == NPY_OBJECT: f = "O"
21906  * else:
21907  */
21908  __pyx_v_f = ((char *)"Zg");
21909  break;
21910  case NPY_OBJECT:
21911 
21912  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":323
21913  * elif t == NPY_CDOUBLE: f = "Zd"
21914  * elif t == NPY_CLONGDOUBLE: f = "Zg"
21915  * elif t == NPY_OBJECT: f = "O" # <<<<<<<<<<<<<<
21916  * else:
21917  * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t)
21918  */
21919  __pyx_v_f = ((char *)"O");
21920  break;
21921  default:
21922 
21923  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":325
21924  * elif t == NPY_OBJECT: f = "O"
21925  * else:
21926  * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t) # <<<<<<<<<<<<<<
21927  * info.format = f
21928  * return
21929  */
21930  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_t); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 325, __pyx_L1_error)
21931  __Pyx_GOTREF(__pyx_t_3);
21932  __pyx_t_8 = PyUnicode_Format(__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_t_3); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 325, __pyx_L1_error)
21933  __Pyx_GOTREF(__pyx_t_8);
21934  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
21935  __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_8); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 325, __pyx_L1_error)
21936  __Pyx_GOTREF(__pyx_t_3);
21937  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
21938  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
21939  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
21940  __PYX_ERR(1, 325, __pyx_L1_error)
21941  break;
21942  }
21943 
21944  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":326
21945  * else:
21946  * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t)
21947  * info.format = f # <<<<<<<<<<<<<<
21948  * return
21949  * else:
21950  */
21951  __pyx_v_info->format = __pyx_v_f;
21952 
21953  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":327
21954  * raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t)
21955  * info.format = f
21956  * return # <<<<<<<<<<<<<<
21957  * else:
21958  * info.format = <char*>PyObject_Malloc(_buffer_format_string_len)
21959  */
21960  __pyx_r = 0;
21961  goto __pyx_L0;
21962 
21963  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":302
21964  * info.obj = self
21965  *
21966  * if not PyDataType_HASFIELDS(descr): # <<<<<<<<<<<<<<
21967  * t = descr.type_num
21968  * if ((descr.byteorder == c'>' and little_endian) or
21969  */
21970  }
21971 
21972  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":329
21973  * return
21974  * else:
21975  * info.format = <char*>PyObject_Malloc(_buffer_format_string_len) # <<<<<<<<<<<<<<
21976  * info.format[0] = c'^' # Native data types, manual alignment
21977  * offset = 0
21978  */
21979  /*else*/ {
21980  __pyx_v_info->format = ((char *)PyObject_Malloc(0xFF));
21981 
21982  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":330
21983  * else:
21984  * info.format = <char*>PyObject_Malloc(_buffer_format_string_len)
21985  * info.format[0] = c'^' # Native data types, manual alignment # <<<<<<<<<<<<<<
21986  * offset = 0
21987  * f = _util_dtypestring(descr, info.format + 1,
21988  */
21989  (__pyx_v_info->format[0]) = '^';
21990 
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22540  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":853
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22617  * if ((child.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
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22628  } else {
22629  __pyx_t_6 = __pyx_t_7;
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22632  __pyx_L8_next_or:;
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22642  if (__pyx_t_7) {
22643  } else {
22644  __pyx_t_6 = __pyx_t_7;
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22646  }
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22648  __pyx_t_6 = __pyx_t_7;
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22675  *
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22677  * (child.byteorder == c'<' and not little_endian)):
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22719  * offset[0] += 1 # <<<<<<<<<<<<<<
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22730  * offset[0] += child.itemsize # <<<<<<<<<<<<<<
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22739  *
22740  * if not PyDataType_HASFIELDS(child): # <<<<<<<<<<<<<<
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22742  * if end - f < 5:
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22745  if (__pyx_t_6) {
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22756  __Pyx_XDECREF_SET(__pyx_v_t, __pyx_t_4);
22757  __pyx_t_4 = 0;
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22760  * if not PyDataType_HASFIELDS(child):
22761  * t = child.type_num
22762  * if end - f < 5: # <<<<<<<<<<<<<<
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22764  *
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22770  * t = child.type_num
22771  * if end - f < 5:
22772  * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<<
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23543  *
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23545  * try: # <<<<<<<<<<<<<<
23546  * _import_umath()
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23549  __Pyx_XGIVEREF(__pyx_t_1);
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23551  __Pyx_XGIVEREF(__pyx_t_3);
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23553  goto __pyx_L1_error;
23554  __pyx_L8_try_end:;
23555  }
23556 
23557  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1040
23558  * raise ImportError("numpy.core.multiarray failed to import")
23559  *
23560  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
23561  * try:
23562  * _import_umath()
23563  */
23564 
23565  /* function exit code */
23566  __pyx_r = 0;
23567  goto __pyx_L0;
23568  __pyx_L1_error:;
23569  __Pyx_XDECREF(__pyx_t_5);
23570  __Pyx_XDECREF(__pyx_t_6);
23571  __Pyx_XDECREF(__pyx_t_7);
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23604  * try: # <<<<<<<<<<<<<<
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23614  __Pyx_XGOTREF(__pyx_t_3);
23615  /*try:*/ {
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23618  * cdef inline int import_ufunc() except -1:
23619  * try:
23620  * _import_umath() # <<<<<<<<<<<<<<
23621  * except Exception:
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23628  * cdef inline int import_ufunc() except -1:
23629  * try: # <<<<<<<<<<<<<<
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23636  __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
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23638  __pyx_L3_error:;
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23642  * _import_umath()
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23675  __Pyx_XGIVEREF(__pyx_t_1);
23676  __Pyx_XGIVEREF(__pyx_t_2);
23677  __Pyx_XGIVEREF(__pyx_t_3);
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23683  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1046
23684  * raise ImportError("numpy.core.umath failed to import")
23685  *
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23695  __Pyx_XDECREF(__pyx_t_5);
23696  __Pyx_XDECREF(__pyx_t_6);
23697  __Pyx_XDECREF(__pyx_t_7);
23698  __Pyx_XDECREF(__pyx_t_8);
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23834  {&__pyx_n_s_k, __pyx_k_k, sizeof(__pyx_k_k), 0, 0, 1, 1},
23835  {&__pyx_n_s_kb, __pyx_k_kb, sizeof(__pyx_k_kb), 0, 0, 1, 1},
23836  {&__pyx_n_s_kr_eN, __pyx_k_kr_eN, sizeof(__pyx_k_kr_eN), 0, 0, 1, 1},
23837  {&__pyx_n_s_kr_neig, __pyx_k_kr_neig, sizeof(__pyx_k_kr_neig), 0, 0, 1, 1},
23838  {&__pyx_n_s_l2g, __pyx_k_l2g, sizeof(__pyx_k_l2g), 0, 0, 1, 1},
23839  {&__pyx_n_s_m, __pyx_k_m, sizeof(__pyx_k_m), 0, 0, 1, 1},
23840  {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
23841  {&__pyx_n_s_matID, __pyx_k_matID, sizeof(__pyx_k_matID), 0, 0, 1, 1},
23842  {&__pyx_n_s_matID_neig, __pyx_k_matID_neig, sizeof(__pyx_k_matID_neig), 0, 0, 1, 1},
23843  {&__pyx_n_s_material, __pyx_k_material, sizeof(__pyx_k_material), 0, 0, 1, 1},
23844  {&__pyx_n_s_material_functions, __pyx_k_material_functions, sizeof(__pyx_k_material_functions), 0, 0, 1, 1},
23845  {&__pyx_n_s_material_left, __pyx_k_material_left, sizeof(__pyx_k_material_left), 0, 0, 1, 1},
23846  {&__pyx_n_s_material_right, __pyx_k_material_right, sizeof(__pyx_k_material_right), 0, 0, 1, 1},
23847  {&__pyx_n_s_mt, __pyx_k_mt, sizeof(__pyx_k_mt), 0, 0, 1, 1},
23848  {&__pyx_n_s_mt_avg, __pyx_k_mt_avg, sizeof(__pyx_k_mt_avg), 0, 0, 1, 1},
23849  {&__pyx_n_s_n, __pyx_k_n, sizeof(__pyx_k_n), 0, 0, 1, 1},
23850  {&__pyx_n_s_nAvgWeight, __pyx_k_nAvgWeight, sizeof(__pyx_k_nAvgWeight), 0, 0, 1, 1},
23851  {&__pyx_n_s_nDOF_test_element, __pyx_k_nDOF_test_element, sizeof(__pyx_k_nDOF_test_element), 0, 0, 1, 1},
23852  {&__pyx_n_s_nDOF_trial_element, __pyx_k_nDOF_trial_element, sizeof(__pyx_k_nDOF_trial_element), 0, 0, 1, 1},
23853  {&__pyx_n_s_nElementBoundaries_element, __pyx_k_nElementBoundaries_element, sizeof(__pyx_k_nElementBoundaries_element), 0, 0, 1, 1},
23854  {&__pyx_n_s_nElementBoundaries_global, __pyx_k_nElementBoundaries_global, sizeof(__pyx_k_nElementBoundaries_global), 0, 0, 1, 1},
23855  {&__pyx_n_s_nElements_global, __pyx_k_nElements_global, sizeof(__pyx_k_nElements_global), 0, 0, 1, 1},
23856  {&__pyx_n_s_nExteriorElementBoundaries_globa, __pyx_k_nExteriorElementBoundaries_globa, sizeof(__pyx_k_nExteriorElementBoundaries_globa), 0, 0, 1, 1},
23857  {&__pyx_n_s_nSpace, __pyx_k_nSpace, sizeof(__pyx_k_nSpace), 0, 0, 1, 1},
23858  {&__pyx_n_s_nSpace2, __pyx_k_nSpace2, sizeof(__pyx_k_nSpace2), 0, 0, 1, 1},
23859  {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
23860  {&__pyx_n_s_nd, __pyx_k_nd, sizeof(__pyx_k_nd), 0, 0, 1, 1},
23861  {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0},
23862  {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0},
23863  {&__pyx_n_s_nnz, __pyx_k_nnz, sizeof(__pyx_k_nnz), 0, 0, 1, 1},
23864  {&__pyx_n_s_numer, __pyx_k_numer, sizeof(__pyx_k_numer), 0, 0, 1, 1},
23865  {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
23866  {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0},
23867  {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0},
23868  {&__pyx_n_s_omega_e, __pyx_k_omega_e, sizeof(__pyx_k_omega_e), 0, 0, 1, 1},
23869  {&__pyx_n_s_one8, __pyx_k_one8, sizeof(__pyx_k_one8), 0, 0, 1, 1},
23870  {&__pyx_n_s_onePlus_pcBar_n, __pyx_k_onePlus_pcBar_n, sizeof(__pyx_k_onePlus_pcBar_n), 0, 0, 1, 1},
23871  {&__pyx_n_s_pcBar, __pyx_k_pcBar, sizeof(__pyx_k_pcBar), 0, 0, 1, 1},
23872  {&__pyx_n_s_pcBar_n, __pyx_k_pcBar_n, sizeof(__pyx_k_pcBar_n), 0, 0, 1, 1},
23873  {&__pyx_n_s_pcBar_nM1, __pyx_k_pcBar_nM1, sizeof(__pyx_k_pcBar_nM1), 0, 0, 1, 1},
23874  {&__pyx_n_s_pcBar_nM2, __pyx_k_pcBar_nM2, sizeof(__pyx_k_pcBar_nM2), 0, 0, 1, 1},
23875  {&__pyx_n_s_phi_eN, __pyx_k_phi_eN, sizeof(__pyx_k_phi_eN), 0, 0, 1, 1},
23876  {&__pyx_n_s_phi_neig, __pyx_k_phi_neig, sizeof(__pyx_k_phi_neig), 0, 0, 1, 1},
23877  {&__pyx_n_s_pi, __pyx_k_pi, sizeof(__pyx_k_pi), 0, 0, 1, 1},
23878  {&__pyx_n_s_picard, __pyx_k_picard, sizeof(__pyx_k_picard), 0, 0, 1, 1},
23879  {&__pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_k_proteus_subsurfaceTransportFunct, sizeof(__pyx_k_proteus_subsurfaceTransportFunct), 0, 0, 1, 0},
23880  {&__pyx_n_s_psiC, __pyx_k_psiC, sizeof(__pyx_k_psiC), 0, 0, 1, 1},
23881  {&__pyx_n_s_q, __pyx_k_q, sizeof(__pyx_k_q), 0, 0, 1, 1},
23882  {&__pyx_n_s_q_alin, __pyx_k_q_alin, sizeof(__pyx_k_q_alin), 0, 0, 1, 1},
23883  {&__pyx_n_s_q_detJ, __pyx_k_q_detJ, sizeof(__pyx_k_q_detJ), 0, 0, 1, 1},
23884  {&__pyx_n_s_q_dkr, __pyx_k_q_dkr, sizeof(__pyx_k_q_dkr), 0, 0, 1, 1},
23885  {&__pyx_n_s_q_dm, __pyx_k_q_dm, sizeof(__pyx_k_q_dm), 0, 0, 1, 1},
23886  {&__pyx_n_s_q_dmass, __pyx_k_q_dmass, sizeof(__pyx_k_q_dmass), 0, 0, 1, 1},
23887  {&__pyx_n_s_q_dmt, __pyx_k_q_dmt, sizeof(__pyx_k_q_dmt), 0, 0, 1, 1},
23888  {&__pyx_n_s_q_flin, __pyx_k_q_flin, sizeof(__pyx_k_q_flin), 0, 0, 1, 1},
23889  {&__pyx_n_s_q_grad_u, __pyx_k_q_grad_u, sizeof(__pyx_k_q_grad_u), 0, 0, 1, 1},
23890  {&__pyx_n_s_q_grad_v, __pyx_k_q_grad_v, sizeof(__pyx_k_q_grad_v), 0, 0, 1, 1},
23891  {&__pyx_n_s_q_grad_w, __pyx_k_q_grad_w, sizeof(__pyx_k_q_grad_w), 0, 0, 1, 1},
23892  {&__pyx_n_s_q_kr, __pyx_k_q_kr, sizeof(__pyx_k_q_kr), 0, 0, 1, 1},
23893  {&__pyx_n_s_q_kr_up, __pyx_k_q_kr_up, sizeof(__pyx_k_q_kr_up), 0, 0, 1, 1},
23894  {&__pyx_n_s_q_m, __pyx_k_q_m, sizeof(__pyx_k_q_m), 0, 0, 1, 1},
23895  {&__pyx_n_s_q_mass, __pyx_k_q_mass, sizeof(__pyx_k_q_mass), 0, 0, 1, 1},
23896  {&__pyx_n_s_q_mt, __pyx_k_q_mt, sizeof(__pyx_k_q_mt), 0, 0, 1, 1},
23897  {&__pyx_n_s_q_r, __pyx_k_q_r, sizeof(__pyx_k_q_r), 0, 0, 1, 1},
23898  {&__pyx_n_s_q_u, __pyx_k_q_u, sizeof(__pyx_k_q_u), 0, 0, 1, 1},
23899  {&__pyx_n_s_q_vals, __pyx_k_q_vals, sizeof(__pyx_k_q_vals), 0, 0, 1, 1},
23900  {&__pyx_n_s_q_x, __pyx_k_q_x, sizeof(__pyx_k_q_x), 0, 0, 1, 1},
23901  {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
23902  {&__pyx_n_s_rho, __pyx_k_rho, sizeof(__pyx_k_rho), 0, 0, 1, 1},
23903  {&__pyx_n_s_rho2, __pyx_k_rho2, sizeof(__pyx_k_rho2), 0, 0, 1, 1},
23904  {&__pyx_n_s_rhom, __pyx_k_rhom, sizeof(__pyx_k_rhom), 0, 0, 1, 1},
23905  {&__pyx_n_s_rotatingGaussianElementVelocityE, __pyx_k_rotatingGaussianElementVelocityE, sizeof(__pyx_k_rotatingGaussianElementVelocityE), 0, 0, 1, 1},
23906  {&__pyx_n_s_rotatingGaussianElementVelocityE_2, __pyx_k_rotatingGaussianElementVelocityE_2, sizeof(__pyx_k_rotatingGaussianElementVelocityE_2), 0, 0, 1, 1},
23907  {&__pyx_n_s_rowptr, __pyx_k_rowptr, sizeof(__pyx_k_rowptr), 0, 0, 1, 1},
23908  {&__pyx_n_s_sBar, __pyx_k_sBar, sizeof(__pyx_k_sBar), 0, 0, 1, 1},
23909  {&__pyx_n_s_setElementBoundariesArray, __pyx_k_setElementBoundariesArray, sizeof(__pyx_k_setElementBoundariesArray), 0, 0, 1, 1},
23910  {&__pyx_n_s_setExteriorElementBoundaryTypes, __pyx_k_setExteriorElementBoundaryTypes, sizeof(__pyx_k_setExteriorElementBoundaryTypes), 0, 0, 1, 1},
23911  {&__pyx_n_s_setScalarMaterialFunctionOverEle, __pyx_k_setScalarMaterialFunctionOverEle, sizeof(__pyx_k_setScalarMaterialFunctionOverEle), 0, 0, 1, 1},
23912  {&__pyx_n_s_setScalarMaterialFunctionOverEle_2, __pyx_k_setScalarMaterialFunctionOverEle_2, sizeof(__pyx_k_setScalarMaterialFunctionOverEle_2), 0, 0, 1, 1},
23913  {&__pyx_n_s_setScalarMaterialFunctionOverGlo, __pyx_k_setScalarMaterialFunctionOverGlo, sizeof(__pyx_k_setScalarMaterialFunctionOverGlo), 0, 0, 1, 1},
23914  {&__pyx_n_s_setSparseTensorMaterialFunctionO, __pyx_k_setSparseTensorMaterialFunctionO, sizeof(__pyx_k_setSparseTensorMaterialFunctionO), 0, 0, 1, 1},
23915  {&__pyx_n_s_setSparseTensorMaterialFunctionO_2, __pyx_k_setSparseTensorMaterialFunctionO_2, sizeof(__pyx_k_setSparseTensorMaterialFunctionO_2), 0, 0, 1, 1},
23916  {&__pyx_n_s_setVectorMaterialFunctionOverEle, __pyx_k_setVectorMaterialFunctionOverEle, sizeof(__pyx_k_setVectorMaterialFunctionOverEle), 0, 0, 1, 1},
23917  {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1},
23918  {&__pyx_n_s_sqrt_sBar, __pyx_k_sqrt_sBar, sizeof(__pyx_k_sqrt_sBar), 0, 0, 1, 1},
23919  {&__pyx_n_s_subsurfaceTransportFunctions, __pyx_k_subsurfaceTransportFunctions, sizeof(__pyx_k_subsurfaceTransportFunctions), 0, 0, 1, 1},
23920  {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1},
23921  {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1},
23922  {&__pyx_n_s_tForReversal, __pyx_k_tForReversal, sizeof(__pyx_k_tForReversal), 0, 0, 1, 1},
23923  {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
23924  {&__pyx_n_s_thetaR, __pyx_k_thetaR, sizeof(__pyx_k_thetaR), 0, 0, 1, 1},
23925  {&__pyx_n_s_thetaS, __pyx_k_thetaS, sizeof(__pyx_k_thetaS), 0, 0, 1, 1},
23926  {&__pyx_n_s_thetaSR, __pyx_k_thetaSR, sizeof(__pyx_k_thetaSR), 0, 0, 1, 1},
23927  {&__pyx_n_s_thetaW, __pyx_k_thetaW, sizeof(__pyx_k_thetaW), 0, 0, 1, 1},
23928  {&__pyx_n_s_thisElementIsUpwind, __pyx_k_thisElementIsUpwind, sizeof(__pyx_k_thisElementIsUpwind), 0, 0, 1, 1},
23929  {&__pyx_n_s_transient, __pyx_k_transient, sizeof(__pyx_k_transient), 0, 0, 1, 1},
23930  {&__pyx_n_s_u_dof, __pyx_k_u_dof, sizeof(__pyx_k_u_dof), 0, 0, 1, 1},
23931  {&__pyx_n_s_u_eN, __pyx_k_u_eN, sizeof(__pyx_k_u_eN), 0, 0, 1, 1},
23932  {&__pyx_n_s_u_j, __pyx_k_u_j, sizeof(__pyx_k_u_j), 0, 0, 1, 1},
23933  {&__pyx_n_s_u_l2g, __pyx_k_u_l2g, sizeof(__pyx_k_u_l2g), 0, 0, 1, 1},
23934  {&__pyx_n_s_u_neig, __pyx_k_u_neig, sizeof(__pyx_k_u_neig), 0, 0, 1, 1},
23935  {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0},
23936  {&__pyx_n_s_updateMassJacobian_weakAvg, __pyx_k_updateMassJacobian_weakAvg, sizeof(__pyx_k_updateMassJacobian_weakAvg), 0, 0, 1, 1},
23937  {&__pyx_n_s_updateMass_weakAvg, __pyx_k_updateMass_weakAvg, sizeof(__pyx_k_updateMass_weakAvg), 0, 0, 1, 1},
23938  {&__pyx_n_s_upwindFlag, __pyx_k_upwindFlag, sizeof(__pyx_k_upwindFlag), 0, 0, 1, 1},
23939  {&__pyx_n_s_v, __pyx_k_v, sizeof(__pyx_k_v), 0, 0, 1, 1},
23940  {&__pyx_n_s_vBar, __pyx_k_vBar, sizeof(__pyx_k_vBar), 0, 0, 1, 1},
23941  {&__pyx_n_s_vBar2, __pyx_k_vBar2, sizeof(__pyx_k_vBar2), 0, 0, 1, 1},
23942  {&__pyx_n_s_vol, __pyx_k_vol, sizeof(__pyx_k_vol), 0, 0, 1, 1},
23943  {&__pyx_n_s_volFactor, __pyx_k_volFactor, sizeof(__pyx_k_volFactor), 0, 0, 1, 1},
23944  {&__pyx_n_s_vol_e, __pyx_k_vol_e, sizeof(__pyx_k_vol_e), 0, 0, 1, 1},
23945  {&__pyx_n_s_volume, __pyx_k_volume, sizeof(__pyx_k_volume), 0, 0, 1, 1},
23946  {&__pyx_n_s_vortexElementVelocityEval3, __pyx_k_vortexElementVelocityEval3, sizeof(__pyx_k_vortexElementVelocityEval3), 0, 0, 1, 1},
23947  {&__pyx_n_s_vortexElementVelocityEval4, __pyx_k_vortexElementVelocityEval4, sizeof(__pyx_k_vortexElementVelocityEval4), 0, 0, 1, 1},
23948  {&__pyx_n_s_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 0, 1, 1},
23949  {&__pyx_n_s_weak_residual, __pyx_k_weak_residual, sizeof(__pyx_k_weak_residual), 0, 0, 1, 1},
23950  {&__pyx_n_s_weight, __pyx_k_weight, sizeof(__pyx_k_weight), 0, 0, 1, 1},
23951  {&__pyx_n_s_x, __pyx_k_x, sizeof(__pyx_k_x), 0, 0, 1, 1},
23952  {&__pyx_n_s_xc, __pyx_k_xc, sizeof(__pyx_k_xc), 0, 0, 1, 1},
23953  {&__pyx_n_s_yc, __pyx_k_yc, sizeof(__pyx_k_yc), 0, 0, 1, 1},
23954  {&__pyx_n_s_zVelocity, __pyx_k_zVelocity, sizeof(__pyx_k_zVelocity), 0, 0, 1, 1},
23955  {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
23956  {&__pyx_n_s_zvelocity, __pyx_k_zvelocity, sizeof(__pyx_k_zvelocity), 0, 0, 1, 1},
23957  {0, 0, 0, 0, 0, 0, 0}
23958 };
23959 static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) {
23960  __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 24, __pyx_L1_error)
23961  __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(1, 272, __pyx_L1_error)
23962  __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) __PYX_ERR(1, 856, __pyx_L1_error)
23963  __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(1, 1038, __pyx_L1_error)
23964  return 0;
23965  __pyx_L1_error:;
23966  return -1;
23967 }
23968 
23969 static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
23970  __Pyx_RefNannyDeclarations
23971  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
23972 
23973  /* "subsurfaceTransportFunctions.pyx":66
23974  * material = elementMaterialTypes[eN]
23975  * for k in range(q_vals.shape[1]):
23976  * q_vals[eN,k,:] = material_functions[material].flat # <<<<<<<<<<<<<<
23977  *
23978  *
23979  */
23980  __pyx_slice_ = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice_)) __PYX_ERR(0, 66, __pyx_L1_error)
23981  __Pyx_GOTREF(__pyx_slice_);
23982  __Pyx_GIVEREF(__pyx_slice_);
23983 
23984  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":272
23985  * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS)
23986  * and not PyArray_CHKFLAGS(self, NPY_ARRAY_C_CONTIGUOUS)):
23987  * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<<
23988  *
23989  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
23990  */
23991  __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_C_contiguous); if (unlikely(!__pyx_tuple__2)) __PYX_ERR(1, 272, __pyx_L1_error)
23992  __Pyx_GOTREF(__pyx_tuple__2);
23993  __Pyx_GIVEREF(__pyx_tuple__2);
23994 
23995  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":276
23996  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
23997  * and not PyArray_CHKFLAGS(self, NPY_ARRAY_F_CONTIGUOUS)):
23998  * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<<
23999  *
24000  * info.buf = PyArray_DATA(self)
24001  */
24002  __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_Fortran_contiguou); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(1, 276, __pyx_L1_error)
24003  __Pyx_GOTREF(__pyx_tuple__3);
24004  __Pyx_GIVEREF(__pyx_tuple__3);
24005 
24006  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":306
24007  * if ((descr.byteorder == c'>' and little_endian) or
24008  * (descr.byteorder == c'<' and not little_endian)):
24009  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
24010  * if t == NPY_BYTE: f = "b"
24011  * elif t == NPY_UBYTE: f = "B"
24012  */
24013  __pyx_tuple__4 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(1, 306, __pyx_L1_error)
24014  __Pyx_GOTREF(__pyx_tuple__4);
24015  __Pyx_GIVEREF(__pyx_tuple__4);
24016 
24017  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":856
24018  *
24019  * if (end - f) - <int>(new_offset - offset[0]) < 15:
24020  * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<<
24021  *
24022  * if ((child.byteorder == c'>' and little_endian) or
24023  */
24024  __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor); if (unlikely(!__pyx_tuple__5)) __PYX_ERR(1, 856, __pyx_L1_error)
24025  __Pyx_GOTREF(__pyx_tuple__5);
24026  __Pyx_GIVEREF(__pyx_tuple__5);
24027 
24028  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":880
24029  * t = child.type_num
24030  * if end - f < 5:
24031  * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<<
24032  *
24033  * # Until ticket #99 is fixed, use integers to avoid warnings
24034  */
24035  __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor_2); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(1, 880, __pyx_L1_error)
24036  __Pyx_GOTREF(__pyx_tuple__6);
24037  __Pyx_GIVEREF(__pyx_tuple__6);
24038 
24039  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1038
24040  * _import_array()
24041  * except Exception:
24042  * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
24043  *
24044  * cdef inline int import_umath() except -1:
24045  */
24046  __pyx_tuple__7 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_multiarray_failed_to); if (unlikely(!__pyx_tuple__7)) __PYX_ERR(1, 1038, __pyx_L1_error)
24047  __Pyx_GOTREF(__pyx_tuple__7);
24048  __Pyx_GIVEREF(__pyx_tuple__7);
24049 
24050  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1044
24051  * _import_umath()
24052  * except Exception:
24053  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
24054  *
24055  * cdef inline int import_ufunc() except -1:
24056  */
24057  __pyx_tuple__8 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__8)) __PYX_ERR(1, 1044, __pyx_L1_error)
24058  __Pyx_GOTREF(__pyx_tuple__8);
24059  __Pyx_GIVEREF(__pyx_tuple__8);
24060 
24061  /* "subsurfaceTransportFunctions.pyx":18
24062  * ctypedef int ITYPE_t
24063  *
24064  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
24065  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
24066  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
24067  */
24068  __pyx_tuple__9 = PyTuple_Pack(8, __pyx_n_s_nExteriorElementBoundaries_globa, __pyx_n_s_exteriorElementBoundariesArray, __pyx_n_s_elementBoundaryElementsArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_exteriorElementBoundaryMaterialT, __pyx_n_s_ebNE, __pyx_n_s_ebN, __pyx_n_s_eN); if (unlikely(!__pyx_tuple__9)) __PYX_ERR(0, 18, __pyx_L1_error)
24069  __Pyx_GOTREF(__pyx_tuple__9);
24070  __Pyx_GIVEREF(__pyx_tuple__9);
24071  __pyx_codeobj__10 = (PyObject*)__Pyx_PyCode_New(5, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__9, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setExteriorElementBoundaryTypes, 18, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__10)) __PYX_ERR(0, 18, __pyx_L1_error)
24072 
24073  /* "subsurfaceTransportFunctions.pyx":29
24074  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
24075  *
24076  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
24077  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
24078  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24079  */
24080  __pyx_tuple__11 = PyTuple_Pack(7, __pyx_n_s_nElementBoundaries_global, __pyx_n_s_elementBoundaryElementsArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_elementBoundaryMaterialTypes, __pyx_n_s_ebN, __pyx_n_s_eN_left, __pyx_n_s_eN_right); if (unlikely(!__pyx_tuple__11)) __PYX_ERR(0, 29, __pyx_L1_error)
24081  __Pyx_GOTREF(__pyx_tuple__11);
24082  __Pyx_GIVEREF(__pyx_tuple__11);
24083  __pyx_codeobj__12 = (PyObject*)__Pyx_PyCode_New(4, 0, 7, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__11, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setElementBoundariesArray, 29, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__12)) __PYX_ERR(0, 29, __pyx_L1_error)
24084 
24085  /* "subsurfaceTransportFunctions.pyx":43
24086  *
24087  * ###
24088  * def setScalarMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
24089  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
24090  * dict material_functions):
24091  */
24092  __pyx_tuple__13 = PyTuple_Pack(6, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__13)) __PYX_ERR(0, 43, __pyx_L1_error)
24093  __Pyx_GOTREF(__pyx_tuple__13);
24094  __Pyx_GIVEREF(__pyx_tuple__13);
24095  __pyx_codeobj__14 = (PyObject*)__Pyx_PyCode_New(3, 0, 6, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__13, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setScalarMaterialFunctionOverEle, 43, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__14)) __PYX_ERR(0, 43, __pyx_L1_error)
24096 
24097  /* "subsurfaceTransportFunctions.pyx":56
24098  * q_vals[eN,k] = material_functions[material]
24099  *
24100  * def setVectorMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
24101  * numpy.ndarray[DTYPE_t,ndim=3] q_vals,
24102  * dict material_functions):
24103  */
24104  __pyx_tuple__15 = PyTuple_Pack(6, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(0, 56, __pyx_L1_error)
24105  __Pyx_GOTREF(__pyx_tuple__15);
24106  __Pyx_GIVEREF(__pyx_tuple__15);
24107  __pyx_codeobj__16 = (PyObject*)__Pyx_PyCode_New(3, 0, 6, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__15, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setVectorMaterialFunctionOverEle, 56, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__16)) __PYX_ERR(0, 56, __pyx_L1_error)
24108 
24109  /* "subsurfaceTransportFunctions.pyx":69
24110  *
24111  *
24112  * def setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24113  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24114  * numpy.ndarray[DTYPE_t,ndim=3] ebq_vals,
24115  */
24116  __pyx_tuple__17 = PyTuple_Pack(10, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(0, 69, __pyx_L1_error)
24117  __Pyx_GOTREF(__pyx_tuple__17);
24118  __Pyx_GIVEREF(__pyx_tuple__17);
24119  __pyx_codeobj__18 = (PyObject*)__Pyx_PyCode_New(4, 0, 10, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__17, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setScalarMaterialFunctionOverEle_2, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__18)) __PYX_ERR(0, 69, __pyx_L1_error)
24120 
24121  /* "subsurfaceTransportFunctions.pyx":91
24122  * material_functions[material_right])
24123  *
24124  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24125  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24126  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24127  */
24128  __pyx_tuple__19 = PyTuple_Pack(15, __pyx_n_s_nd, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__19)) __PYX_ERR(0, 91, __pyx_L1_error)
24129  __Pyx_GOTREF(__pyx_tuple__19);
24130  __Pyx_GIVEREF(__pyx_tuple__19);
24131  __pyx_codeobj__20 = (PyObject*)__Pyx_PyCode_New(5, 0, 15, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__19, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setSparseTensorMaterialFunctionO, 91, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__20)) __PYX_ERR(0, 91, __pyx_L1_error)
24132 
24133  /* "subsurfaceTransportFunctions.pyx":118
24134  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24135  *
24136  * def setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24137  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24138  * numpy.ndarray[DTYPE_t,ndim=2] ebq_global_vals,
24139  */
24140  __pyx_tuple__21 = PyTuple_Pack(8, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_k); if (unlikely(!__pyx_tuple__21)) __PYX_ERR(0, 118, __pyx_L1_error)
24141  __Pyx_GOTREF(__pyx_tuple__21);
24142  __Pyx_GIVEREF(__pyx_tuple__21);
24143  __pyx_codeobj__22 = (PyObject*)__Pyx_PyCode_New(4, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__21, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setScalarMaterialFunctionOverGlo, 118, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__22)) __PYX_ERR(0, 118, __pyx_L1_error)
24144 
24145  /* "subsurfaceTransportFunctions.pyx":139
24146  *
24147  *
24148  * def setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24149  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24150  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24151  */
24152  __pyx_tuple__23 = PyTuple_Pack(13, __pyx_n_s_nd, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__23)) __PYX_ERR(0, 139, __pyx_L1_error)
24153  __Pyx_GOTREF(__pyx_tuple__23);
24154  __Pyx_GIVEREF(__pyx_tuple__23);
24155  __pyx_codeobj__24 = (PyObject*)__Pyx_PyCode_New(5, 0, 13, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__23, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_setSparseTensorMaterialFunctionO_2, 139, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__24)) __PYX_ERR(0, 139, __pyx_L1_error)
24156 
24157  /* "subsurfaceTransportFunctions.pyx":165
24158  *
24159  * ###
24160  * def evaluateScalarMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24161  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24162  * numpy.ndarray[DTYPE_t,ndim=3] x,
24163  */
24164  __pyx_tuple__25 = PyTuple_Pack(8, __pyx_n_s_t, __pyx_n_s_elementMaterialTypes, __pyx_n_s_x, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__25)) __PYX_ERR(0, 165, __pyx_L1_error)
24165  __Pyx_GOTREF(__pyx_tuple__25);
24166  __Pyx_GIVEREF(__pyx_tuple__25);
24167  __pyx_codeobj__26 = (PyObject*)__Pyx_PyCode_New(5, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__25, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateScalarMaterialFunctionOv, 165, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__26)) __PYX_ERR(0, 165, __pyx_L1_error)
24168 
24169  /* "subsurfaceTransportFunctions.pyx":180
24170  * q_vals[eN,k] = material_functions[material](x[eN,k],t)
24171  *
24172  * def evaluateVectorMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24173  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24174  * numpy.ndarray[DTYPE_t,ndim=3] x,
24175  */
24176  __pyx_tuple__27 = PyTuple_Pack(8, __pyx_n_s_t, __pyx_n_s_elementMaterialTypes, __pyx_n_s_x, __pyx_n_s_q_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_material); if (unlikely(!__pyx_tuple__27)) __PYX_ERR(0, 180, __pyx_L1_error)
24177  __Pyx_GOTREF(__pyx_tuple__27);
24178  __Pyx_GIVEREF(__pyx_tuple__27);
24179  __pyx_codeobj__28 = (PyObject*)__Pyx_PyCode_New(5, 0, 8, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__27, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateVectorMaterialFunctionOv, 180, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__28)) __PYX_ERR(0, 180, __pyx_L1_error)
24180 
24181  /* "subsurfaceTransportFunctions.pyx":195
24182  *
24183  *
24184  * def evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24185  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24186  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24187  */
24188  __pyx_tuple__29 = PyTuple_Pack(12, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right); if (unlikely(!__pyx_tuple__29)) __PYX_ERR(0, 195, __pyx_L1_error)
24189  __Pyx_GOTREF(__pyx_tuple__29);
24190  __Pyx_GIVEREF(__pyx_tuple__29);
24191  __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(6, 0, 12, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateScalarMaterialFunctionOv_2, 195, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) __PYX_ERR(0, 195, __pyx_L1_error)
24192 
24193  /* "subsurfaceTransportFunctions.pyx":219
24194  * material_functions[material_right](x[eN,ebN_local,k],t))
24195  *
24196  * def evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24197  * double t,
24198  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24199  */
24200  __pyx_tuple__31 = PyTuple_Pack(17, __pyx_n_s_nd, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_vals, __pyx_n_s_material_functions, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_ebN_local, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__31)) __PYX_ERR(0, 219, __pyx_L1_error)
24201  __Pyx_GOTREF(__pyx_tuple__31);
24202  __Pyx_GIVEREF(__pyx_tuple__31);
24203  __pyx_codeobj__32 = (PyObject*)__Pyx_PyCode_New(7, 0, 17, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__31, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateSparseTensorMaterialFunc, 219, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__32)) __PYX_ERR(0, 219, __pyx_L1_error)
24204 
24205  /* "subsurfaceTransportFunctions.pyx":248
24206  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24207  *
24208  * def evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24209  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24210  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24211  */
24212  __pyx_tuple__33 = PyTuple_Pack(10, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_k); if (unlikely(!__pyx_tuple__33)) __PYX_ERR(0, 248, __pyx_L1_error)
24213  __Pyx_GOTREF(__pyx_tuple__33);
24214  __Pyx_GIVEREF(__pyx_tuple__33);
24215  __pyx_codeobj__34 = (PyObject*)__Pyx_PyCode_New(6, 0, 10, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__33, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateScalarMaterialFunctionOv_3, 248, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__34)) __PYX_ERR(0, 248, __pyx_L1_error)
24216 
24217  /* "subsurfaceTransportFunctions.pyx":271
24218  *
24219  *
24220  * def evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24221  * double t,
24222  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24223  */
24224  __pyx_tuple__35 = PyTuple_Pack(15, __pyx_n_s_nd, __pyx_n_s_t, __pyx_n_s_elementBoundariesArray, __pyx_n_s_elementBoundaryTypes, __pyx_n_s_x, __pyx_n_s_ebq_global_vals, __pyx_n_s_material_functions, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_material_left, __pyx_n_s_material_right, __pyx_n_s_I, __pyx_n_s_J, __pyx_n_s_numer, __pyx_n_s_denom); if (unlikely(!__pyx_tuple__35)) __PYX_ERR(0, 271, __pyx_L1_error)
24225  __Pyx_GOTREF(__pyx_tuple__35);
24226  __Pyx_GIVEREF(__pyx_tuple__35);
24227  __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(7, 0, 15, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_evaluateSparseTensorMaterialFunc_2, 271, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) __PYX_ERR(0, 271, __pyx_L1_error)
24228 
24229  /* "subsurfaceTransportFunctions.pyx":301
24230  *
24231  * ##################################################
24232  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
24233  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24234  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24235  */
24236  __pyx_tuple__37 = PyTuple_Pack(24, __pyx_n_s_rho, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_KWs, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_ebN, __pyx_n_s_matID, __pyx_n_s_matID_neig, __pyx_n_s_nSpace2, __pyx_n_s_nnz, __pyx_n_s_a_eN, __pyx_n_s_a_neig, __pyx_n_s_a_avg); if (unlikely(!__pyx_tuple__37)) __PYX_ERR(0, 301, __pyx_L1_error)
24237  __Pyx_GOTREF(__pyx_tuple__37);
24238  __Pyx_GIVEREF(__pyx_tuple__37);
24239  __pyx_codeobj__38 = (PyObject*)__Pyx_PyCode_New(12, 0, 24, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__37, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_RE_NCP1_evaluateElementCoefficie, 301, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__38)) __PYX_ERR(0, 301, __pyx_L1_error)
24240 
24241  /* "subsurfaceTransportFunctions.pyx":359
24242  *
24243  *
24244  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
24245  * double beta,
24246  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24247  */
24248  __pyx_tuple__39 = PyTuple_Pack(61, __pyx_n_s_rho, __pyx_n_s_beta, __pyx_n_s_gravity, __pyx_n_s_alpha, __pyx_n_s_n, __pyx_n_s_thetaR, __pyx_n_s_thetaSR, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_elementMaterialTypes, __pyx_n_s_nDOF_trial_element, __pyx_n_s_u_l2g, __pyx_n_s_u_dof, __pyx_n_s_q_x, __pyx_n_s_q_u, __pyx_n_s_q_mass, __pyx_n_s_q_dmass, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_dkr, __pyx_n_s_q_kr_up, __pyx_n_s_q, __pyx_n_s_psiC, __pyx_n_s_pcBar, __pyx_n_s_pcBar_n, __pyx_n_s_pcBar_nM1, __pyx_n_s_pcBar_nM2, __pyx_n_s_onePlus_pcBar_n, __pyx_n_s_sBar, __pyx_n_s_sqrt_sBar, __pyx_n_s_DsBar_DpsiC, __pyx_n_s_thetaW, __pyx_n_s_DthetaW_DpsiC, __pyx_n_s_vBar, __pyx_n_s_vBar2, __pyx_n_s_DvBar_DpsiC, __pyx_n_s_KWr, __pyx_n_s_DKWr_DpsiC, __pyx_n_s_rho2, __pyx_n_s_thetaS, __pyx_n_s_rhom, __pyx_n_s_drhom, __pyx_n_s_m, __pyx_n_s_u_j, __pyx_n_s_u_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_eN, __pyx_n_s_kr_neig, __pyx_n_s_phi_eN, __pyx_n_s_phi_neig, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ebN, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_j, __pyx_n_s_matID, __pyx_n_s_nAvgWeight); if (unlikely(!__pyx_tuple__39)) __PYX_ERR(0, 359, __pyx_L1_error)
24249  __Pyx_GOTREF(__pyx_tuple__39);
24250  __Pyx_GIVEREF(__pyx_tuple__39);
24251  __pyx_codeobj__40 = (PyObject*)__Pyx_PyCode_New(24, 0, 61, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__39, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_RE_NCP1_evaluateElementCoefficie_2, 359, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__40)) __PYX_ERR(0, 359, __pyx_L1_error)
24252 
24253  /* "subsurfaceTransportFunctions.pyx":486
24254  * #eN for upwind
24255  *
24256  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24257  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24258  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24259  */
24260  __pyx_tuple__41 = PyTuple_Pack(42, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_nDOF_test_element, __pyx_n_s_q_u, __pyx_n_s_q_grad_u, __pyx_n_s_q_grad_w, __pyx_n_s_q_detJ, __pyx_n_s_q_m, __pyx_n_s_q_mt, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_kr_up, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_elementResidual, __pyx_n_s_upwindFlag, __pyx_n_s_q, __pyx_n_s_nnz, __pyx_n_s_u_eN, __pyx_n_s_kr_eN, __pyx_n_s_phi_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_neig, __pyx_n_s_phi_neig, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_i, __pyx_n_s_ebN, __pyx_n_s_a_up, __pyx_n_s_f_up, __pyx_n_s_nAvgWeight, __pyx_n_s_weight, __pyx_n_s_volFactor, __pyx_n_s_volume); if (unlikely(!__pyx_tuple__41)) __PYX_ERR(0, 486, __pyx_L1_error)
24261  __Pyx_GOTREF(__pyx_tuple__41);
24262  __Pyx_GIVEREF(__pyx_tuple__41);
24263  __pyx_codeobj__42 = (PyObject*)__Pyx_PyCode_New(21, 0, 42, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__41, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_RE_NCP1_getElementResidual, 486, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__42)) __PYX_ERR(0, 486, __pyx_L1_error)
24264 
24265  /* "subsurfaceTransportFunctions.pyx":574
24266  * #i
24267  * #eN
24268  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24269  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24270  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24271  */
24272  __pyx_tuple__43 = PyTuple_Pack(51, __pyx_n_s_gravity, __pyx_n_s_rowptr, __pyx_n_s_colind, __pyx_n_s_nSpace, __pyx_n_s_nElements_global, __pyx_n_s_nElementBoundaries_element, __pyx_n_s_elementNeighborsArray, __pyx_n_s_elementBarycentersArray, __pyx_n_s_nDOF_test_element, __pyx_n_s_nDOF_trial_element, __pyx_n_s_q_u, __pyx_n_s_q_grad_u, __pyx_n_s_q_grad_w, __pyx_n_s_q_grad_v, __pyx_n_s_q_detJ, __pyx_n_s_q_m, __pyx_n_s_q_dm, __pyx_n_s_q_mt, __pyx_n_s_q_dmt, __pyx_n_s_q_r, __pyx_n_s_q_kr, __pyx_n_s_q_dkr, __pyx_n_s_q_kr_up, __pyx_n_s_q_flin, __pyx_n_s_q_alin, __pyx_n_s_elementJacobian, __pyx_n_s_upwindFlag, __pyx_n_s_picard, __pyx_n_s_q, __pyx_n_s_nnz, __pyx_n_s_u_eN, __pyx_n_s_kr_eN, __pyx_n_s_phi_eN, __pyx_n_s_u_neig, __pyx_n_s_kr_neig, __pyx_n_s_phi_neig, __pyx_n_s_dkr_up, __pyx_n_s_eN, __pyx_n_s_eN_neighbor, __pyx_n_s_ii, __pyx_n_s_I, __pyx_n_s_a_up, __pyx_n_s_f_up, __pyx_n_s_nAvgWeight, __pyx_n_s_weight, __pyx_n_s_volFactor, __pyx_n_s_thisElementIsUpwind, __pyx_n_s_volume, __pyx_n_s_i, __pyx_n_s_ebN, __pyx_n_s_j); if (unlikely(!__pyx_tuple__43)) __PYX_ERR(0, 574, __pyx_L1_error)
24273  __Pyx_GOTREF(__pyx_tuple__43);
24274  __Pyx_GIVEREF(__pyx_tuple__43);
24275  __pyx_codeobj__44 = (PyObject*)__Pyx_PyCode_New(26, 0, 51, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__43, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_RE_NCP1_getElementJacobian, 574, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__44)) __PYX_ERR(0, 574, __pyx_L1_error)
24276 
24277  /* "subsurfaceTransportFunctions.pyx":673
24278  * ##################################################
24279  *
24280  * def updateMass_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] mt, # <<<<<<<<<<<<<<
24281  * numpy.ndarray[DTYPE_t,ndim=3] w,
24282  * numpy.ndarray[DTYPE_t,ndim=2] dV,
24283  */
24284  __pyx_tuple__45 = PyTuple_Pack(9, __pyx_n_s_mt, __pyx_n_s_w, __pyx_n_s_dV, __pyx_n_s_weak_residual, __pyx_n_s_eN, __pyx_n_s_i, __pyx_n_s_k, __pyx_n_s_mt_avg, __pyx_n_s_vol); if (unlikely(!__pyx_tuple__45)) __PYX_ERR(0, 673, __pyx_L1_error)
24285  __Pyx_GOTREF(__pyx_tuple__45);
24286  __Pyx_GIVEREF(__pyx_tuple__45);
24287  __pyx_codeobj__46 = (PyObject*)__Pyx_PyCode_New(4, 0, 9, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__45, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_updateMass_weakAvg, 673, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__46)) __PYX_ERR(0, 673, __pyx_L1_error)
24288 
24289  /* "subsurfaceTransportFunctions.pyx":692
24290  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
24291  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
24292  * def updateMassJacobian_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] dmt, # <<<<<<<<<<<<<<
24293  * numpy.ndarray[DTYPE_t,ndim=3] w,
24294  * numpy.ndarray[DTYPE_t,ndim=3] v,
24295  */
24296  __pyx_tuple__47 = PyTuple_Pack(11, __pyx_n_s_dmt, __pyx_n_s_w, __pyx_n_s_v, __pyx_n_s_dV, __pyx_n_s_jacobian_weak_residual, __pyx_n_s_eN, __pyx_n_s_i, __pyx_n_s_j, __pyx_n_s_k, __pyx_n_s_dmtj_avg, __pyx_n_s_vol); if (unlikely(!__pyx_tuple__47)) __PYX_ERR(0, 692, __pyx_L1_error)
24297  __Pyx_GOTREF(__pyx_tuple__47);
24298  __Pyx_GIVEREF(__pyx_tuple__47);
24299  __pyx_codeobj__48 = (PyObject*)__Pyx_PyCode_New(5, 0, 11, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__47, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_updateMassJacobian_weakAvg, 692, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__48)) __PYX_ERR(0, 692, __pyx_L1_error)
24300 
24301  /* "subsurfaceTransportFunctions.pyx":717
24302  * #ELLAM
24303  * ########################################################################
24304  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
24305  * numpy.ndarray[DTYPE_t,ndim=4] n,
24306  * numpy.ndarray[DTYPE_t,ndim=3] dS,
24307  */
24308  __pyx_tuple__49 = PyTuple_Pack(9, __pyx_n_s_v, __pyx_n_s_n, __pyx_n_s_dS, __pyx_n_s_flux, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_kb, __pyx_n_s_integral, __pyx_n_s_I); if (unlikely(!__pyx_tuple__49)) __PYX_ERR(0, 717, __pyx_L1_error)
24309  __Pyx_GOTREF(__pyx_tuple__49);
24310  __Pyx_GIVEREF(__pyx_tuple__49);
24311  __pyx_codeobj__50 = (PyObject*)__Pyx_PyCode_New(4, 0, 9, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__49, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_calculateNormalFlux, 717, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__50)) __PYX_ERR(0, 717, __pyx_L1_error)
24312 
24313  /* "subsurfaceTransportFunctions.pyx":732
24314  * flux[eN,ebN] = integral
24315  *
24316  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
24317  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
24318  * numpy.ndarray[DTYPE_t,ndim=2] dm,
24319  */
24320  __pyx_tuple__51 = PyTuple_Pack(9, __pyx_n_s_df, __pyx_n_s_characteristic_velocity, __pyx_n_s_dm, __pyx_n_s_dV, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_I, __pyx_n_s_omega_e, __pyx_n_s_vol_e); if (unlikely(!__pyx_tuple__51)) __PYX_ERR(0, 732, __pyx_L1_error)
24321  __Pyx_GOTREF(__pyx_tuple__51);
24322  __Pyx_GIVEREF(__pyx_tuple__51);
24323  __pyx_codeobj__52 = (PyObject*)__Pyx_PyCode_New(4, 0, 9, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__51, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_computeSimpleCharacteristicVeloc, 732, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__52)) __PYX_ERR(0, 732, __pyx_L1_error)
24324 
24325  /* "subsurfaceTransportFunctions.pyx":753
24326  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
24327  *
24328  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
24329  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
24330  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
24331  */
24332  __pyx_tuple__53 = PyTuple_Pack(11, __pyx_n_s_df_dofs, __pyx_n_s_characteristic_velocity_dofs, __pyx_n_s_l2g, __pyx_n_s_dm, __pyx_n_s_dV, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_j, __pyx_n_s_J, __pyx_n_s_omega_e, __pyx_n_s_vol_e); if (unlikely(!__pyx_tuple__53)) __PYX_ERR(0, 753, __pyx_L1_error)
24333  __Pyx_GOTREF(__pyx_tuple__53);
24334  __Pyx_GIVEREF(__pyx_tuple__53);
24335  __pyx_codeobj__54 = (PyObject*)__Pyx_PyCode_New(5, 0, 11, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__53, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_computeSimpleCharacteristicVeloc_2, 753, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__54)) __PYX_ERR(0, 753, __pyx_L1_error)
24336 
24337  /* "subsurfaceTransportFunctions.pyx":776
24338  *
24339  * #problem specific velocity evaluation
24340  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
24341  * double t,
24342  * double tForReversal,
24343  */
24344  __pyx_tuple__55 = PyTuple_Pack(12, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_zvelocity, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__55)) __PYX_ERR(0, 776, __pyx_L1_error)
24345  __Pyx_GOTREF(__pyx_tuple__55);
24346  __Pyx_GIVEREF(__pyx_tuple__55);
24347  __pyx_codeobj__56 = (PyObject*)__Pyx_PyCode_New(9, 0, 12, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__55, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_rotatingGaussianElementVelocityE, 776, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__56)) __PYX_ERR(0, 776, __pyx_L1_error)
24348 
24349  /* "subsurfaceTransportFunctions.pyx":816
24350  *
24351  *
24352  * def rotatingGaussianElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
24353  * double t,
24354  * double tForReversal,
24355  */
24356  __pyx_tuple__57 = PyTuple_Pack(13, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_zvelocity, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__57)) __PYX_ERR(0, 816, __pyx_L1_error)
24357  __Pyx_GOTREF(__pyx_tuple__57);
24358  __Pyx_GIVEREF(__pyx_tuple__57);
24359  __pyx_codeobj__58 = (PyObject*)__Pyx_PyCode_New(9, 0, 13, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__57, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_rotatingGaussianElementVelocityE_2, 816, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__58)) __PYX_ERR(0, 816, __pyx_L1_error)
24360 
24361  /* "subsurfaceTransportFunctions.pyx":859
24362  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
24363  *
24364  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
24365  * double t,
24366  * double tForReversal,
24367  */
24368  __pyx_tuple__59 = PyTuple_Pack(12, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_zVelocity, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__59)) __PYX_ERR(0, 859, __pyx_L1_error)
24369  __Pyx_GOTREF(__pyx_tuple__59);
24370  __Pyx_GIVEREF(__pyx_tuple__59);
24371  __pyx_codeobj__60 = (PyObject*)__Pyx_PyCode_New(9, 0, 12, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__59, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_proteus_subsurfaceTransportFunct, __pyx_n_s_helicalElementVelocityEval3, 859, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__60)) __PYX_ERR(0, 859, __pyx_L1_error)
24372 
24373  /* "subsurfaceTransportFunctions.pyx":884
24374  * v[eN,k,2]=zVelocity
24375  *
24376  * def helicalElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
24377  * double t,
24378  * double tForReversal,
24379  */
24380  __pyx_tuple__61 = PyTuple_Pack(13, __pyx_n_s_transient, __pyx_n_s_t, __pyx_n_s_tForReversal, __pyx_n_s_clock, __pyx_n_s_zVelocity, __pyx_n_s_xc, __pyx_n_s_yc, __pyx_n_s_x, __pyx_n_s_v, __pyx_n_s_eN, __pyx_n_s_ebN, __pyx_n_s_k, __pyx_n_s_pi); if (unlikely(!__pyx_tuple__61)) __PYX_ERR(0, 884, __pyx_L1_error)
24381  __Pyx_GOTREF(__pyx_tuple__61);
24382  __Pyx_GIVEREF(__pyx_tuple__61);
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24385  /* "subsurfaceTransportFunctions.pyx":911
24386  * v[eN,ebN,k,2]=zVelocity
24387  *
24388  * def vortexElementVelocityEval3(double t, # <<<<<<<<<<<<<<
24389  * numpy.ndarray[DTYPE_t,ndim=3] x,
24390  * numpy.ndarray[DTYPE_t,ndim=3] v):
24391  */
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24396 
24397  /* "subsurfaceTransportFunctions.pyx":924
24398  *
24399  *
24400  * def vortexElementVelocityEval4(double t, # <<<<<<<<<<<<<<
24401  * numpy.ndarray[DTYPE_t,ndim=4] x,
24402  * numpy.ndarray[DTYPE_t,ndim=4] v):
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24421  return 0;
24422  __pyx_L1_error:;
24423  return -1;
24424 }
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24426 static CYTHON_SMALL_CODE int __Pyx_modinit_global_init_code(void); /*proto*/
24427 static CYTHON_SMALL_CODE int __Pyx_modinit_variable_export_code(void); /*proto*/
24428 static CYTHON_SMALL_CODE int __Pyx_modinit_function_export_code(void); /*proto*/
24429 static CYTHON_SMALL_CODE int __Pyx_modinit_type_init_code(void); /*proto*/
24430 static CYTHON_SMALL_CODE int __Pyx_modinit_type_import_code(void); /*proto*/
24431 static CYTHON_SMALL_CODE int __Pyx_modinit_variable_import_code(void); /*proto*/
24432 static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/
24433 
24434 static int __Pyx_modinit_global_init_code(void) {
24435  __Pyx_RefNannyDeclarations
24436  __Pyx_RefNannySetupContext("__Pyx_modinit_global_init_code", 0);
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24438  __Pyx_RefNannyFinishContext();
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24441 
24442 static int __Pyx_modinit_variable_export_code(void) {
24443  __Pyx_RefNannyDeclarations
24444  __Pyx_RefNannySetupContext("__Pyx_modinit_variable_export_code", 0);
24445  /*--- Variable export code ---*/
24446  __Pyx_RefNannyFinishContext();
24447  return 0;
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24449 
24450 static int __Pyx_modinit_function_export_code(void) {
24451  __Pyx_RefNannyDeclarations
24452  __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0);
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24454  __Pyx_RefNannyFinishContext();
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24457 
24458 static int __Pyx_modinit_type_init_code(void) {
24459  __Pyx_RefNannyDeclarations
24460  __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0);
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24462  __Pyx_RefNannyFinishContext();
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24465 
24466 static int __Pyx_modinit_type_import_code(void) {
24467  __Pyx_RefNannyDeclarations
24468  PyObject *__pyx_t_1 = NULL;
24469  __Pyx_RefNannySetupContext("__Pyx_modinit_type_import_code", 0);
24470  /*--- Type import code ---*/
24471  __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 9, __pyx_L1_error)
24472  __Pyx_GOTREF(__pyx_t_1);
24473  __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
24474  #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
24475  sizeof(PyTypeObject),
24476  #else
24477  sizeof(PyHeapTypeObject),
24478  #endif
24479  __Pyx_ImportType_CheckSize_Warn);
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24483  __Pyx_GOTREF(__pyx_t_1);
24484  __pyx_ptype_5numpy_dtype = __Pyx_ImportType(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __Pyx_ImportType_CheckSize_Ignore);
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24500  return -1;
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24502 
24503 static int __Pyx_modinit_variable_import_code(void) {
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24505  __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0);
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24510 
24511 static int __Pyx_modinit_function_import_code(void) {
24512  __Pyx_RefNannyDeclarations
24513  __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0);
24514  /*--- Function import code ---*/
24515  __Pyx_RefNannyFinishContext();
24516  return 0;
24517 }
24518 
24519 
24520 #if PY_MAJOR_VERSION < 3
24521 #ifdef CYTHON_NO_PYINIT_EXPORT
24522 #define __Pyx_PyMODINIT_FUNC void
24523 #else
24524 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
24525 #endif
24526 #else
24527 #ifdef CYTHON_NO_PYINIT_EXPORT
24528 #define __Pyx_PyMODINIT_FUNC PyObject *
24529 #else
24530 #define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
24531 #endif
24532 #endif
24533 
24534 
24535 #if PY_MAJOR_VERSION < 3
24536 __Pyx_PyMODINIT_FUNC initsubsurfaceTransportFunctions(void) CYTHON_SMALL_CODE; /*proto*/
24537 __Pyx_PyMODINIT_FUNC initsubsurfaceTransportFunctions(void)
24538 #else
24539 __Pyx_PyMODINIT_FUNC PyInit_subsurfaceTransportFunctions(void) CYTHON_SMALL_CODE; /*proto*/
24540 __Pyx_PyMODINIT_FUNC PyInit_subsurfaceTransportFunctions(void)
24541 #if CYTHON_PEP489_MULTI_PHASE_INIT
24542 {
24543  return PyModuleDef_Init(&__pyx_moduledef);
24544 }
24545 static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) {
24546  #if PY_VERSION_HEX >= 0x030700A1
24547  static PY_INT64_T main_interpreter_id = -1;
24548  PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp);
24549  if (main_interpreter_id == -1) {
24550  main_interpreter_id = current_id;
24551  return (unlikely(current_id == -1)) ? -1 : 0;
24552  } else if (unlikely(main_interpreter_id != current_id))
24553  #else
24554  static PyInterpreterState *main_interpreter = NULL;
24555  PyInterpreterState *current_interpreter = PyThreadState_Get()->interp;
24556  if (!main_interpreter) {
24557  main_interpreter = current_interpreter;
24558  } else if (unlikely(main_interpreter != current_interpreter))
24559  #endif
24560  {
24561  PyErr_SetString(
24562  PyExc_ImportError,
24563  "Interpreter change detected - this module can only be loaded into one interpreter per process.");
24564  return -1;
24565  }
24566  return 0;
24567 }
24568 static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) {
24569  PyObject *value = PyObject_GetAttrString(spec, from_name);
24570  int result = 0;
24571  if (likely(value)) {
24572  if (allow_none || value != Py_None) {
24573  result = PyDict_SetItemString(moddict, to_name, value);
24574  }
24575  Py_DECREF(value);
24576  } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) {
24577  PyErr_Clear();
24578  } else {
24579  result = -1;
24580  }
24581  return result;
24582 }
24583 static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNUSED PyModuleDef *def) {
24584  PyObject *module = NULL, *moddict, *modname;
24585  if (__Pyx_check_single_interpreter())
24586  return NULL;
24587  if (__pyx_m)
24588  return __Pyx_NewRef(__pyx_m);
24589  modname = PyObject_GetAttrString(spec, "name");
24590  if (unlikely(!modname)) goto bad;
24591  module = PyModule_NewObject(modname);
24592  Py_DECREF(modname);
24593  if (unlikely(!module)) goto bad;
24594  moddict = PyModule_GetDict(module);
24595  if (unlikely(!moddict)) goto bad;
24596  if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad;
24597  if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad;
24598  if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad;
24599  if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad;
24600  return module;
24601 bad:
24602  Py_XDECREF(module);
24603  return NULL;
24604 }
24605 
24606 
24607 static CYTHON_SMALL_CODE int __pyx_pymod_exec_subsurfaceTransportFunctions(PyObject *__pyx_pyinit_module)
24608 #endif
24609 #endif
24610 {
24611  PyObject *__pyx_t_1 = NULL;
24612  __Pyx_RefNannyDeclarations
24613  #if CYTHON_PEP489_MULTI_PHASE_INIT
24614  if (__pyx_m) {
24615  if (__pyx_m == __pyx_pyinit_module) return 0;
24616  PyErr_SetString(PyExc_RuntimeError, "Module 'subsurfaceTransportFunctions' has already been imported. Re-initialisation is not supported.");
24617  return -1;
24618  }
24619  #elif PY_MAJOR_VERSION >= 3
24620  if (__pyx_m) return __Pyx_NewRef(__pyx_m);
24621  #endif
24622  #if CYTHON_REFNANNY
24623 __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
24624 if (!__Pyx_RefNanny) {
24625  PyErr_Clear();
24626  __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny");
24627  if (!__Pyx_RefNanny)
24628  Py_FatalError("failed to import 'refnanny' module");
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24630 #endif
24631  __Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_subsurfaceTransportFunctions(void)", 0);
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24633  #ifdef __Pxy_PyFrame_Initialize_Offsets
24634  __Pxy_PyFrame_Initialize_Offsets();
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24637  __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(0, 1, __pyx_L1_error)
24638  __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(0, 1, __pyx_L1_error)
24639  #ifdef __Pyx_CyFunction_USED
24640  if (__pyx_CyFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24641  #endif
24642  #ifdef __Pyx_FusedFunction_USED
24643  if (__pyx_FusedFunction_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24644  #endif
24645  #ifdef __Pyx_Coroutine_USED
24646  if (__pyx_Coroutine_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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24651  #ifdef __Pyx_AsyncGen_USED
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24653  #endif
24654  #ifdef __Pyx_StopAsyncIteration_USED
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24656  #endif
24657  /*--- Library function declarations ---*/
24658  /*--- Threads initialization code ---*/
24659  #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
24660  #ifdef WITH_THREAD /* Python build with threading support? */
24661  PyEval_InitThreads();
24662  #endif
24663  #endif
24664  /*--- Module creation code ---*/
24665  #if CYTHON_PEP489_MULTI_PHASE_INIT
24666  __pyx_m = __pyx_pyinit_module;
24667  Py_INCREF(__pyx_m);
24668  #else
24669  #if PY_MAJOR_VERSION < 3
24670  __pyx_m = Py_InitModule4("subsurfaceTransportFunctions", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
24671  #else
24672  __pyx_m = PyModule_Create(&__pyx_moduledef);
24673  #endif
24674  if (unlikely(!__pyx_m)) __PYX_ERR(0, 1, __pyx_L1_error)
24675  #endif
24676  __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
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24678  __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
24679  Py_INCREF(__pyx_b);
24680  __pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error)
24681  Py_INCREF(__pyx_cython_runtime);
24682  if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
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24686  if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24687  #endif
24688  if (__pyx_module_is_main_subsurfaceTransportFunctions) {
24689  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name, __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24690  }
24691  #if PY_MAJOR_VERSION >= 3
24692  {
24693  PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
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24695  if (unlikely(PyDict_SetItemString(modules, "subsurfaceTransportFunctions", __pyx_m) < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
24696  }
24697  }
24698  #endif
24699  /*--- Builtin init code ---*/
24700  if (__Pyx_InitCachedBuiltins() < 0) goto __pyx_L1_error;
24701  /*--- Constants init code ---*/
24702  if (__Pyx_InitCachedConstants() < 0) goto __pyx_L1_error;
24703  /*--- Global type/function init code ---*/
24704  (void)__Pyx_modinit_global_init_code();
24705  (void)__Pyx_modinit_variable_export_code();
24706  (void)__Pyx_modinit_function_export_code();
24707  (void)__Pyx_modinit_type_init_code();
24708  if (unlikely(__Pyx_modinit_type_import_code() != 0)) goto __pyx_L1_error;
24709  (void)__Pyx_modinit_variable_import_code();
24710  (void)__Pyx_modinit_function_import_code();
24711  /*--- Execution code ---*/
24712  #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
24713  if (__Pyx_patch_abc() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
24714  #endif
24715 
24716  /* "subsurfaceTransportFunctions.pyx":1
24717  * import numpy # <<<<<<<<<<<<<<
24718  * cimport numpy
24719  * cdef extern from "math.h":
24720  */
24721  __pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
24722  __Pyx_GOTREF(__pyx_t_1);
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24724  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24725 
24726  /* "subsurfaceTransportFunctions.pyx":18
24727  * ctypedef int ITYPE_t
24728  *
24729  * def setExteriorElementBoundaryTypes(int nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
24730  * numpy.ndarray[ITYPE_t,ndim=1] exteriorElementBoundariesArray,
24731  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
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24733  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_1setExteriorElementBoundaryTypes, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 18, __pyx_L1_error)
24734  __Pyx_GOTREF(__pyx_t_1);
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24736  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24737 
24738  /* "subsurfaceTransportFunctions.pyx":29
24739  * exteriorElementBoundaryMaterialTypes[ebNE] = elementMaterialTypes[eN]
24740  *
24741  * def setElementBoundariesArray(int nElementBoundaries_global, # <<<<<<<<<<<<<<
24742  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryElementsArray,
24743  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24744  */
24745  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_3setElementBoundariesArray, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 29, __pyx_L1_error)
24746  __Pyx_GOTREF(__pyx_t_1);
24747  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setElementBoundariesArray, __pyx_t_1) < 0) __PYX_ERR(0, 29, __pyx_L1_error)
24748  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24749 
24750  /* "subsurfaceTransportFunctions.pyx":43
24751  *
24752  * ###
24753  * def setScalarMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
24754  * numpy.ndarray[DTYPE_t,ndim=2] q_vals,
24755  * dict material_functions):
24756  */
24757  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_5setScalarMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 43, __pyx_L1_error)
24758  __Pyx_GOTREF(__pyx_t_1);
24759  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverEle, __pyx_t_1) < 0) __PYX_ERR(0, 43, __pyx_L1_error)
24760  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24761 
24762  /* "subsurfaceTransportFunctions.pyx":56
24763  * q_vals[eN,k] = material_functions[material]
24764  *
24765  * def setVectorMaterialFunctionOverElements(numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes, # <<<<<<<<<<<<<<
24766  * numpy.ndarray[DTYPE_t,ndim=3] q_vals,
24767  * dict material_functions):
24768  */
24769  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_7setVectorMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 56, __pyx_L1_error)
24770  __Pyx_GOTREF(__pyx_t_1);
24771  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setVectorMaterialFunctionOverEle, __pyx_t_1) < 0) __PYX_ERR(0, 56, __pyx_L1_error)
24772  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24773 
24774  /* "subsurfaceTransportFunctions.pyx":69
24775  *
24776  *
24777  * def setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24778  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24779  * numpy.ndarray[DTYPE_t,ndim=3] ebq_vals,
24780  */
24781  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_9setScalarMaterialFunctionOverElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 69, __pyx_L1_error)
24782  __Pyx_GOTREF(__pyx_t_1);
24783  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverEle_2, __pyx_t_1) < 0) __PYX_ERR(0, 69, __pyx_L1_error)
24784  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24785 
24786  /* "subsurfaceTransportFunctions.pyx":91
24787  * material_functions[material_right])
24788  *
24789  * def setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24790  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24791  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24792  */
24793  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_11setSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 91, __pyx_L1_error)
24794  __Pyx_GOTREF(__pyx_t_1);
24795  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setSparseTensorMaterialFunctionO, __pyx_t_1) < 0) __PYX_ERR(0, 91, __pyx_L1_error)
24796  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24797 
24798  /* "subsurfaceTransportFunctions.pyx":118
24799  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24800  *
24801  * def setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray, # <<<<<<<<<<<<<<
24802  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24803  * numpy.ndarray[DTYPE_t,ndim=2] ebq_global_vals,
24804  */
24805  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_13setScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 118, __pyx_L1_error)
24806  __Pyx_GOTREF(__pyx_t_1);
24807  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setScalarMaterialFunctionOverGlo, __pyx_t_1) < 0) __PYX_ERR(0, 118, __pyx_L1_error)
24808  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24809 
24810  /* "subsurfaceTransportFunctions.pyx":139
24811  *
24812  *
24813  * def setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24814  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24815  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24816  */
24817  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_15setSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 139, __pyx_L1_error)
24818  __Pyx_GOTREF(__pyx_t_1);
24819  if (PyDict_SetItem(__pyx_d, __pyx_n_s_setSparseTensorMaterialFunctionO_2, __pyx_t_1) < 0) __PYX_ERR(0, 139, __pyx_L1_error)
24820  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24821 
24822  /* "subsurfaceTransportFunctions.pyx":165
24823  *
24824  * ###
24825  * def evaluateScalarMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24826  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24827  * numpy.ndarray[DTYPE_t,ndim=3] x,
24828  */
24829  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_17evaluateScalarMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 165, __pyx_L1_error)
24830  __Pyx_GOTREF(__pyx_t_1);
24831  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv, __pyx_t_1) < 0) __PYX_ERR(0, 165, __pyx_L1_error)
24832  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24833 
24834  /* "subsurfaceTransportFunctions.pyx":180
24835  * q_vals[eN,k] = material_functions[material](x[eN,k],t)
24836  *
24837  * def evaluateVectorMaterialFunctionOverElements(double t, # <<<<<<<<<<<<<<
24838  * numpy.ndarray[ITYPE_t,ndim=1] elementMaterialTypes,
24839  * numpy.ndarray[DTYPE_t,ndim=3] x,
24840  */
24841  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_19evaluateVectorMaterialFunctionOverElements, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 180, __pyx_L1_error)
24842  __Pyx_GOTREF(__pyx_t_1);
24843  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateVectorMaterialFunctionOv, __pyx_t_1) < 0) __PYX_ERR(0, 180, __pyx_L1_error)
24844  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24845 
24846  /* "subsurfaceTransportFunctions.pyx":195
24847  *
24848  *
24849  * def evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24850  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24851  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24852  */
24853  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_21evaluateScalarMaterialFunctionOverElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 195, __pyx_L1_error)
24854  __Pyx_GOTREF(__pyx_t_1);
24855  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv_2, __pyx_t_1) < 0) __PYX_ERR(0, 195, __pyx_L1_error)
24856  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24857 
24858  /* "subsurfaceTransportFunctions.pyx":219
24859  * material_functions[material_right](x[eN,ebN_local,k],t))
24860  *
24861  * def evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24862  * double t,
24863  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24864  */
24865  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_23evaluateSparseTensorMaterialFunctionOverElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 219, __pyx_L1_error)
24866  __Pyx_GOTREF(__pyx_t_1);
24867  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateSparseTensorMaterialFunc, __pyx_t_1) < 0) __PYX_ERR(0, 219, __pyx_L1_error)
24868  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24869 
24870  /* "subsurfaceTransportFunctions.pyx":248
24871  * ebq_vals[eN,ebN_local,k,I*nd+J] = numer/denom
24872  *
24873  * def evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage(double t, # <<<<<<<<<<<<<<
24874  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24875  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundaryTypes,
24876  */
24877  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_25evaluateScalarMaterialFunctionOverGlobalElementBoundaries_arithmeticAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 248, __pyx_L1_error)
24878  __Pyx_GOTREF(__pyx_t_1);
24879  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateScalarMaterialFunctionOv_3, __pyx_t_1) < 0) __PYX_ERR(0, 248, __pyx_L1_error)
24880  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24881 
24882  /* "subsurfaceTransportFunctions.pyx":271
24883  *
24884  *
24885  * def evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage(int nd, # <<<<<<<<<<<<<<
24886  * double t,
24887  * numpy.ndarray[ITYPE_t,ndim=2] elementBoundariesArray,
24888  */
24889  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_27evaluateSparseTensorMaterialFunctionOverGlobalElementBoundaries_harmonicAverage, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 271, __pyx_L1_error)
24890  __Pyx_GOTREF(__pyx_t_1);
24891  if (PyDict_SetItem(__pyx_d, __pyx_n_s_evaluateSparseTensorMaterialFunc_2, __pyx_t_1) < 0) __PYX_ERR(0, 271, __pyx_L1_error)
24892  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24893 
24894  /* "subsurfaceTransportFunctions.pyx":301
24895  *
24896  * ##################################################
24897  * def RE_NCP1_evaluateElementCoefficients_Linear(double rho, # <<<<<<<<<<<<<<
24898  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24899  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24900  */
24901  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_29RE_NCP1_evaluateElementCoefficients_Linear, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 301, __pyx_L1_error)
24902  __Pyx_GOTREF(__pyx_t_1);
24903  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_evaluateElementCoefficie, __pyx_t_1) < 0) __PYX_ERR(0, 301, __pyx_L1_error)
24904  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24905 
24906  /* "subsurfaceTransportFunctions.pyx":359
24907  *
24908  *
24909  * def RE_NCP1_evaluateElementCoefficients_VGM(double rho, # <<<<<<<<<<<<<<
24910  * double beta,
24911  * numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities
24912  */
24913  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_31RE_NCP1_evaluateElementCoefficients_VGM, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 359, __pyx_L1_error)
24914  __Pyx_GOTREF(__pyx_t_1);
24915  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_evaluateElementCoefficie_2, __pyx_t_1) < 0) __PYX_ERR(0, 359, __pyx_L1_error)
24916  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24917 
24918  /* "subsurfaceTransportFunctions.pyx":486
24919  * #eN for upwind
24920  *
24921  * def RE_NCP1_getElementResidual(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24922  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24923  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24924  */
24925  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_33RE_NCP1_getElementResidual, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 486, __pyx_L1_error)
24926  __Pyx_GOTREF(__pyx_t_1);
24927  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_getElementResidual, __pyx_t_1) < 0) __PYX_ERR(0, 486, __pyx_L1_error)
24928  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24929 
24930  /* "subsurfaceTransportFunctions.pyx":574
24931  * #i
24932  * #eN
24933  * def RE_NCP1_getElementJacobian(numpy.ndarray[DTYPE_t,ndim=1] gravity,#physical quantities # <<<<<<<<<<<<<<
24934  * numpy.ndarray[ITYPE_t,ndim=1] rowptr,
24935  * numpy.ndarray[ITYPE_t,ndim=1] colind,
24936  */
24937  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_35RE_NCP1_getElementJacobian, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 574, __pyx_L1_error)
24938  __Pyx_GOTREF(__pyx_t_1);
24939  if (PyDict_SetItem(__pyx_d, __pyx_n_s_RE_NCP1_getElementJacobian, __pyx_t_1) < 0) __PYX_ERR(0, 574, __pyx_L1_error)
24940  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24941 
24942  /* "subsurfaceTransportFunctions.pyx":673
24943  * ##################################################
24944  *
24945  * def updateMass_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] mt, # <<<<<<<<<<<<<<
24946  * numpy.ndarray[DTYPE_t,ndim=3] w,
24947  * numpy.ndarray[DTYPE_t,ndim=2] dV,
24948  */
24949  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_37updateMass_weakAvg, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 673, __pyx_L1_error)
24950  __Pyx_GOTREF(__pyx_t_1);
24951  if (PyDict_SetItem(__pyx_d, __pyx_n_s_updateMass_weakAvg, __pyx_t_1) < 0) __PYX_ERR(0, 673, __pyx_L1_error)
24952  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24953 
24954  /* "subsurfaceTransportFunctions.pyx":692
24955  * #cek hack, seems like cython needed some help figuring out that the rvalue was a float
24956  * weak_residual[eN,i] += float(mt_avg*w[eN,k,i]*dV[eN,k])
24957  * def updateMassJacobian_weakAvg(numpy.ndarray[DTYPE_t,ndim=2] dmt, # <<<<<<<<<<<<<<
24958  * numpy.ndarray[DTYPE_t,ndim=3] w,
24959  * numpy.ndarray[DTYPE_t,ndim=3] v,
24960  */
24961  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_39updateMassJacobian_weakAvg, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 692, __pyx_L1_error)
24962  __Pyx_GOTREF(__pyx_t_1);
24963  if (PyDict_SetItem(__pyx_d, __pyx_n_s_updateMassJacobian_weakAvg, __pyx_t_1) < 0) __PYX_ERR(0, 692, __pyx_L1_error)
24964  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24965 
24966  /* "subsurfaceTransportFunctions.pyx":717
24967  * #ELLAM
24968  * ########################################################################
24969  * def calculateNormalFlux(numpy.ndarray[DTYPE_t,ndim=4] v, # <<<<<<<<<<<<<<
24970  * numpy.ndarray[DTYPE_t,ndim=4] n,
24971  * numpy.ndarray[DTYPE_t,ndim=3] dS,
24972  */
24973  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_41calculateNormalFlux, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 717, __pyx_L1_error)
24974  __Pyx_GOTREF(__pyx_t_1);
24975  if (PyDict_SetItem(__pyx_d, __pyx_n_s_calculateNormalFlux, __pyx_t_1) < 0) __PYX_ERR(0, 717, __pyx_L1_error)
24976  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24977 
24978  /* "subsurfaceTransportFunctions.pyx":732
24979  * flux[eN,ebN] = integral
24980  *
24981  * def computeSimpleCharacteristicVelocityFromElementVelocity(numpy.ndarray[DTYPE_t,ndim=3] df, # <<<<<<<<<<<<<<
24982  * numpy.ndarray[DTYPE_t,ndim=3] characteristic_velocity,
24983  * numpy.ndarray[DTYPE_t,ndim=2] dm,
24984  */
24985  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_43computeSimpleCharacteristicVelocityFromElementVelocity, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 732, __pyx_L1_error)
24986  __Pyx_GOTREF(__pyx_t_1);
24987  if (PyDict_SetItem(__pyx_d, __pyx_n_s_computeSimpleCharacteristicVeloc, __pyx_t_1) < 0) __PYX_ERR(0, 732, __pyx_L1_error)
24988  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
24989 
24990  /* "subsurfaceTransportFunctions.pyx":753
24991  * characteristic_velocity[eN,k,I] = df[eN,k,I]*vol_e/(omega_e+1.0e-12)
24992  *
24993  * def computeSimpleCharacteristicVelocityFromVelocityDOFs(numpy.ndarray[DTYPE_t,ndim=1] df_dofs, # <<<<<<<<<<<<<<
24994  * numpy.ndarray[DTYPE_t,ndim=1] characteristic_velocity_dofs,
24995  * numpy.ndarray[ITYPE_t,ndim=2] l2g,
24996  */
24997  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_45computeSimpleCharacteristicVelocityFromVelocityDOFs, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 753, __pyx_L1_error)
24998  __Pyx_GOTREF(__pyx_t_1);
24999  if (PyDict_SetItem(__pyx_d, __pyx_n_s_computeSimpleCharacteristicVeloc_2, __pyx_t_1) < 0) __PYX_ERR(0, 753, __pyx_L1_error)
25000  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25001 
25002  /* "subsurfaceTransportFunctions.pyx":776
25003  *
25004  * #problem specific velocity evaluation
25005  * def rotatingGaussianElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
25006  * double t,
25007  * double tForReversal,
25008  */
25009  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_47rotatingGaussianElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 776, __pyx_L1_error)
25010  __Pyx_GOTREF(__pyx_t_1);
25011  if (PyDict_SetItem(__pyx_d, __pyx_n_s_rotatingGaussianElementVelocityE, __pyx_t_1) < 0) __PYX_ERR(0, 776, __pyx_L1_error)
25012  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25013 
25014  /* "subsurfaceTransportFunctions.pyx":816
25015  *
25016  *
25017  * def rotatingGaussianElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
25018  * double t,
25019  * double tForReversal,
25020  */
25021  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_49rotatingGaussianElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 816, __pyx_L1_error)
25022  __Pyx_GOTREF(__pyx_t_1);
25023  if (PyDict_SetItem(__pyx_d, __pyx_n_s_rotatingGaussianElementVelocityE_2, __pyx_t_1) < 0) __PYX_ERR(0, 816, __pyx_L1_error)
25024  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25025 
25026  /* "subsurfaceTransportFunctions.pyx":859
25027  * v[eN,ebN,k,1]=2.0*pi*(yc-x[eN,ebN,k,0])
25028  *
25029  * def helicalElementVelocityEval3(int transient, # <<<<<<<<<<<<<<
25030  * double t,
25031  * double tForReversal,
25032  */
25033  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_51helicalElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 859, __pyx_L1_error)
25034  __Pyx_GOTREF(__pyx_t_1);
25035  if (PyDict_SetItem(__pyx_d, __pyx_n_s_helicalElementVelocityEval3, __pyx_t_1) < 0) __PYX_ERR(0, 859, __pyx_L1_error)
25036  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25037 
25038  /* "subsurfaceTransportFunctions.pyx":884
25039  * v[eN,k,2]=zVelocity
25040  *
25041  * def helicalElementVelocityEval4(int transient, # <<<<<<<<<<<<<<
25042  * double t,
25043  * double tForReversal,
25044  */
25045  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_53helicalElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 884, __pyx_L1_error)
25046  __Pyx_GOTREF(__pyx_t_1);
25047  if (PyDict_SetItem(__pyx_d, __pyx_n_s_helicalElementVelocityEval4, __pyx_t_1) < 0) __PYX_ERR(0, 884, __pyx_L1_error)
25048  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25049 
25050  /* "subsurfaceTransportFunctions.pyx":911
25051  * v[eN,ebN,k,2]=zVelocity
25052  *
25053  * def vortexElementVelocityEval3(double t, # <<<<<<<<<<<<<<
25054  * numpy.ndarray[DTYPE_t,ndim=3] x,
25055  * numpy.ndarray[DTYPE_t,ndim=3] v):
25056  */
25057  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_55vortexElementVelocityEval3, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 911, __pyx_L1_error)
25058  __Pyx_GOTREF(__pyx_t_1);
25059  if (PyDict_SetItem(__pyx_d, __pyx_n_s_vortexElementVelocityEval3, __pyx_t_1) < 0) __PYX_ERR(0, 911, __pyx_L1_error)
25060  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25061 
25062  /* "subsurfaceTransportFunctions.pyx":924
25063  *
25064  *
25065  * def vortexElementVelocityEval4(double t, # <<<<<<<<<<<<<<
25066  * numpy.ndarray[DTYPE_t,ndim=4] x,
25067  * numpy.ndarray[DTYPE_t,ndim=4] v):
25068  */
25069  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_28subsurfaceTransportFunctions_57vortexElementVelocityEval4, NULL, __pyx_n_s_subsurfaceTransportFunctions); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 924, __pyx_L1_error)
25070  __Pyx_GOTREF(__pyx_t_1);
25071  if (PyDict_SetItem(__pyx_d, __pyx_n_s_vortexElementVelocityEval4, __pyx_t_1) < 0) __PYX_ERR(0, 924, __pyx_L1_error)
25072  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25073 
25074  /* "subsurfaceTransportFunctions.pyx":1
25075  * import numpy # <<<<<<<<<<<<<<
25076  * cimport numpy
25077  * cdef extern from "math.h":
25078  */
25079  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
25080  __Pyx_GOTREF(__pyx_t_1);
25081  if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
25082  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
25083 
25084  /* "linux/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1046
25085  * raise ImportError("numpy.core.umath failed to import")
25086  *
25087  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
25088  * try:
25089  * _import_umath()
25090  */
25091 
25092  /*--- Wrapped vars code ---*/
25093 
25094  goto __pyx_L0;
25095  __pyx_L1_error:;
25096  __Pyx_XDECREF(__pyx_t_1);
25097  if (__pyx_m) {
25098  if (__pyx_d) {
25099  __Pyx_AddTraceback("init subsurfaceTransportFunctions", __pyx_clineno, __pyx_lineno, __pyx_filename);
25100  }
25101  Py_CLEAR(__pyx_m);
25102  } else if (!PyErr_Occurred()) {
25103  PyErr_SetString(PyExc_ImportError, "init subsurfaceTransportFunctions");
25104  }
25105  __pyx_L0:;
25106  __Pyx_RefNannyFinishContext();
25107  #if CYTHON_PEP489_MULTI_PHASE_INIT
25108  return (__pyx_m != NULL) ? 0 : -1;
25109  #elif PY_MAJOR_VERSION >= 3
25110  return __pyx_m;
25111  #else
25112  return;
25113  #endif
25114 }
25115 
25116 /* --- Runtime support code --- */
25117 /* Refnanny */
25118 #if CYTHON_REFNANNY
25119 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
25120  PyObject *m = NULL, *p = NULL;
25121  void *r = NULL;
25122  m = PyImport_ImportModule(modname);
25123  if (!m) goto end;
25124  p = PyObject_GetAttrString(m, "RefNannyAPI");
25125  if (!p) goto end;
25126  r = PyLong_AsVoidPtr(p);
25127 end:
25128  Py_XDECREF(p);
25129  Py_XDECREF(m);
25130  return (__Pyx_RefNannyAPIStruct *)r;
25131 }
25132 #endif
25133 
25134 /* PyObjectGetAttrStr */
25135 #if CYTHON_USE_TYPE_SLOTS
25136 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
25137  PyTypeObject* tp = Py_TYPE(obj);
25138  if (likely(tp->tp_getattro))
25139  return tp->tp_getattro(obj, attr_name);
25140 #if PY_MAJOR_VERSION < 3
25141  if (likely(tp->tp_getattr))
25142  return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
25143 #endif
25144  return PyObject_GetAttr(obj, attr_name);
25145 }
25146 #endif
25147 
25148 /* GetBuiltinName */
25149 static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
25150  PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
25151  if (unlikely(!result)) {
25152  PyErr_Format(PyExc_NameError,
25153 #if PY_MAJOR_VERSION >= 3
25154  "name '%U' is not defined", name);
25155 #else
25156  "name '%.200s' is not defined", PyString_AS_STRING(name));
25157 #endif
25158  }
25159  return result;
25160 }
25161 
25162 /* RaiseArgTupleInvalid */
25163 static void __Pyx_RaiseArgtupleInvalid(
25164  const char* func_name,
25165  int exact,
25166  Py_ssize_t num_min,
25167  Py_ssize_t num_max,
25168  Py_ssize_t num_found)
25169 {
25170  Py_ssize_t num_expected;
25171  const char *more_or_less;
25172  if (num_found < num_min) {
25173  num_expected = num_min;
25174  more_or_less = "at least";
25175  } else {
25176  num_expected = num_max;
25177  more_or_less = "at most";
25178  }
25179  if (exact) {
25180  more_or_less = "exactly";
25181  }
25182  PyErr_Format(PyExc_TypeError,
25183  "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
25184  func_name, more_or_less, num_expected,
25185  (num_expected == 1) ? "" : "s", num_found);
25186 }
25187 
25188 /* RaiseDoubleKeywords */
25189 static void __Pyx_RaiseDoubleKeywordsError(
25190  const char* func_name,
25191  PyObject* kw_name)
25192 {
25193  PyErr_Format(PyExc_TypeError,
25194  #if PY_MAJOR_VERSION >= 3
25195  "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
25196  #else
25197  "%s() got multiple values for keyword argument '%s'", func_name,
25198  PyString_AsString(kw_name));
25199  #endif
25200 }
25201 
25202 /* ParseKeywords */
25203 static int __Pyx_ParseOptionalKeywords(
25204  PyObject *kwds,
25205  PyObject **argnames[],
25206  PyObject *kwds2,
25207  PyObject *values[],
25208  Py_ssize_t num_pos_args,
25209  const char* function_name)
25210 {
25211  PyObject *key = 0, *value = 0;
25212  Py_ssize_t pos = 0;
25213  PyObject*** name;
25214  PyObject*** first_kw_arg = argnames + num_pos_args;
25215  while (PyDict_Next(kwds, &pos, &key, &value)) {
25216  name = first_kw_arg;
25217  while (*name && (**name != key)) name++;
25218  if (*name) {
25219  values[name-argnames] = value;
25220  continue;
25221  }
25222  name = first_kw_arg;
25223  #if PY_MAJOR_VERSION < 3
25224  if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
25225  while (*name) {
25226  if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
25227  && _PyString_Eq(**name, key)) {
25228  values[name-argnames] = value;
25229  break;
25230  }
25231  name++;
25232  }
25233  if (*name) continue;
25234  else {
25235  PyObject*** argname = argnames;
25236  while (argname != first_kw_arg) {
25237  if ((**argname == key) || (
25238  (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
25239  && _PyString_Eq(**argname, key))) {
25240  goto arg_passed_twice;
25241  }
25242  argname++;
25243  }
25244  }
25245  } else
25246  #endif
25247  if (likely(PyUnicode_Check(key))) {
25248  while (*name) {
25249  int cmp = (**name == key) ? 0 :
25250  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
25251  (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
25252  #endif
25253  PyUnicode_Compare(**name, key);
25254  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
25255  if (cmp == 0) {
25256  values[name-argnames] = value;
25257  break;
25258  }
25259  name++;
25260  }
25261  if (*name) continue;
25262  else {
25263  PyObject*** argname = argnames;
25264  while (argname != first_kw_arg) {
25265  int cmp = (**argname == key) ? 0 :
25266  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
25267  (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
25268  #endif
25269  PyUnicode_Compare(**argname, key);
25270  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
25271  if (cmp == 0) goto arg_passed_twice;
25272  argname++;
25273  }
25274  }
25275  } else
25276  goto invalid_keyword_type;
25277  if (kwds2) {
25278  if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
25279  } else {
25280  goto invalid_keyword;
25281  }
25282  }
25283  return 0;
25284 arg_passed_twice:
25285  __Pyx_RaiseDoubleKeywordsError(function_name, key);
25286  goto bad;
25287 invalid_keyword_type:
25288  PyErr_Format(PyExc_TypeError,
25289  "%.200s() keywords must be strings", function_name);
25290  goto bad;
25291 invalid_keyword:
25292  PyErr_Format(PyExc_TypeError,
25293  #if PY_MAJOR_VERSION < 3
25294  "%.200s() got an unexpected keyword argument '%.200s'",
25295  function_name, PyString_AsString(key));
25296  #else
25297  "%s() got an unexpected keyword argument '%U'",
25298  function_name, key);
25299  #endif
25300 bad:
25301  return -1;
25302 }
25303 
25304 /* ArgTypeTest */
25305 static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
25306 {
25307  if (unlikely(!type)) {
25308  PyErr_SetString(PyExc_SystemError, "Missing type object");
25309  return 0;
25310  }
25311  else if (exact) {
25312  #if PY_MAJOR_VERSION == 2
25313  if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
25314  #endif
25315  }
25316  else {
25317  if (likely(__Pyx_TypeCheck(obj, type))) return 1;
25318  }
25319  PyErr_Format(PyExc_TypeError,
25320  "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
25321  name, type->tp_name, Py_TYPE(obj)->tp_name);
25322  return 0;
25323 }
25324 
25325 /* IsLittleEndian */
25326 static CYTHON_INLINE int __Pyx_Is_Little_Endian(void)
25327 {
25328  union {
25329  uint32_t u32;
25330  uint8_t u8[4];
25331  } S;
25332  S.u32 = 0x01020304;
25333  return S.u8[0] == 4;
25334 }
25335 
25336 /* BufferFormatCheck */
25337 static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
25338  __Pyx_BufFmt_StackElem* stack,
25339  __Pyx_TypeInfo* type) {
25340  stack[0].field = &ctx->root;
25341  stack[0].parent_offset = 0;
25342  ctx->root.type = type;
25343  ctx->root.name = "buffer dtype";
25344  ctx->root.offset = 0;
25345  ctx->head = stack;
25346  ctx->head->field = &ctx->root;
25347  ctx->fmt_offset = 0;
25348  ctx->head->parent_offset = 0;
25349  ctx->new_packmode = '@';
25350  ctx->enc_packmode = '@';
25351  ctx->new_count = 1;
25352  ctx->enc_count = 0;
25353  ctx->enc_type = 0;
25354  ctx->is_complex = 0;
25355  ctx->is_valid_array = 0;
25356  ctx->struct_alignment = 0;
25357  while (type->typegroup == 'S') {
25358  ++ctx->head;
25359  ctx->head->field = type->fields;
25360  ctx->head->parent_offset = 0;
25361  type = type->fields->type;
25362  }
25363 }
25364 static int __Pyx_BufFmt_ParseNumber(const char** ts) {
25365  int count;
25366  const char* t = *ts;
25367  if (*t < '0' || *t > '9') {
25368  return -1;
25369  } else {
25370  count = *t++ - '0';
25371  while (*t >= '0' && *t <= '9') {
25372  count *= 10;
25373  count += *t++ - '0';
25374  }
25375  }
25376  *ts = t;
25377  return count;
25378 }
25379 static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
25380  int number = __Pyx_BufFmt_ParseNumber(ts);
25381  if (number == -1)
25382  PyErr_Format(PyExc_ValueError,\
25383  "Does not understand character buffer dtype format string ('%c')", **ts);
25384  return number;
25385 }
25386 static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
25387  PyErr_Format(PyExc_ValueError,
25388  "Unexpected format string character: '%c'", ch);
25389 }
25390 static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
25391  switch (ch) {
25392  case '?': return "'bool'";
25393  case 'c': return "'char'";
25394  case 'b': return "'signed char'";
25395  case 'B': return "'unsigned char'";
25396  case 'h': return "'short'";
25397  case 'H': return "'unsigned short'";
25398  case 'i': return "'int'";
25399  case 'I': return "'unsigned int'";
25400  case 'l': return "'long'";
25401  case 'L': return "'unsigned long'";
25402  case 'q': return "'long long'";
25403  case 'Q': return "'unsigned long long'";
25404  case 'f': return (is_complex ? "'complex float'" : "'float'");
25405  case 'd': return (is_complex ? "'complex double'" : "'double'");
25406  case 'g': return (is_complex ? "'complex long double'" : "'long double'");
25407  case 'T': return "a struct";
25408  case 'O': return "Python object";
25409  case 'P': return "a pointer";
25410  case 's': case 'p': return "a string";
25411  case 0: return "end";
25412  default: return "unparseable format string";
25413  }
25414 }
25415 static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
25416  switch (ch) {
25417  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
25418  case 'h': case 'H': return 2;
25419  case 'i': case 'I': case 'l': case 'L': return 4;
25420  case 'q': case 'Q': return 8;
25421  case 'f': return (is_complex ? 8 : 4);
25422  case 'd': return (is_complex ? 16 : 8);
25423  case 'g': {
25424  PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
25425  return 0;
25426  }
25427  case 'O': case 'P': return sizeof(void*);
25428  default:
25429  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
25430  return 0;
25431  }
25432 }
25433 static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
25434  switch (ch) {
25435  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
25436  case 'h': case 'H': return sizeof(short);
25437  case 'i': case 'I': return sizeof(int);
25438  case 'l': case 'L': return sizeof(long);
25439  #ifdef HAVE_LONG_LONG
25440  case 'q': case 'Q': return sizeof(PY_LONG_LONG);
25441  #endif
25442  case 'f': return sizeof(float) * (is_complex ? 2 : 1);
25443  case 'd': return sizeof(double) * (is_complex ? 2 : 1);
25444  case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
25445  case 'O': case 'P': return sizeof(void*);
25446  default: {
25447  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
25448  return 0;
25449  }
25450  }
25451 }
25452 typedef struct { char c; short x; } __Pyx_st_short;
25453 typedef struct { char c; int x; } __Pyx_st_int;
25454 typedef struct { char c; long x; } __Pyx_st_long;
25455 typedef struct { char c; float x; } __Pyx_st_float;
25456 typedef struct { char c; double x; } __Pyx_st_double;
25457 typedef struct { char c; long double x; } __Pyx_st_longdouble;
25458 typedef struct { char c; void *x; } __Pyx_st_void_p;
25459 #ifdef HAVE_LONG_LONG
25460 typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
25461 #endif
25462 static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
25463  switch (ch) {
25464  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
25465  case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
25466  case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
25467  case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
25468 #ifdef HAVE_LONG_LONG
25469  case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
25470 #endif
25471  case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
25472  case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
25473  case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
25474  case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
25475  default:
25476  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
25477  return 0;
25478  }
25479 }
25480 /* These are for computing the padding at the end of the struct to align
25481  on the first member of the struct. This will probably the same as above,
25482  but we don't have any guarantees.
25483  */
25484 typedef struct { short x; char c; } __Pyx_pad_short;
25485 typedef struct { int x; char c; } __Pyx_pad_int;
25486 typedef struct { long x; char c; } __Pyx_pad_long;
25487 typedef struct { float x; char c; } __Pyx_pad_float;
25488 typedef struct { double x; char c; } __Pyx_pad_double;
25489 typedef struct { long double x; char c; } __Pyx_pad_longdouble;
25490 typedef struct { void *x; char c; } __Pyx_pad_void_p;
25491 #ifdef HAVE_LONG_LONG
25492 typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
25493 #endif
25494 static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
25495  switch (ch) {
25496  case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
25497  case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
25498  case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
25499  case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
25500 #ifdef HAVE_LONG_LONG
25501  case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
25502 #endif
25503  case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
25504  case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
25505  case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
25506  case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
25507  default:
25508  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
25509  return 0;
25510  }
25511 }
25512 static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
25513  switch (ch) {
25514  case 'c':
25515  return 'H';
25516  case 'b': case 'h': case 'i':
25517  case 'l': case 'q': case 's': case 'p':
25518  return 'I';
25519  case '?': case 'B': case 'H': case 'I': case 'L': case 'Q':
25520  return 'U';
25521  case 'f': case 'd': case 'g':
25522  return (is_complex ? 'C' : 'R');
25523  case 'O':
25524  return 'O';
25525  case 'P':
25526  return 'P';
25527  default: {
25528  __Pyx_BufFmt_RaiseUnexpectedChar(ch);
25529  return 0;
25530  }
25531  }
25532 }
25533 static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
25534  if (ctx->head == NULL || ctx->head->field == &ctx->root) {
25535  const char* expected;
25536  const char* quote;
25537  if (ctx->head == NULL) {
25538  expected = "end";
25539  quote = "";
25540  } else {
25541  expected = ctx->head->field->type->name;
25542  quote = "'";
25543  }
25544  PyErr_Format(PyExc_ValueError,
25545  "Buffer dtype mismatch, expected %s%s%s but got %s",
25546  quote, expected, quote,
25547  __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
25548  } else {
25549  __Pyx_StructField* field = ctx->head->field;
25550  __Pyx_StructField* parent = (ctx->head - 1)->field;
25551  PyErr_Format(PyExc_ValueError,
25552  "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
25553  field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
25554  parent->type->name, field->name);
25555  }
25556 }
25557 static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
25558  char group;
25559  size_t size, offset, arraysize = 1;
25560  if (ctx->enc_type == 0) return 0;
25561  if (ctx->head->field->type->arraysize[0]) {
25562  int i, ndim = 0;
25563  if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
25564  ctx->is_valid_array = ctx->head->field->type->ndim == 1;
25565  ndim = 1;
25566  if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
25567  PyErr_Format(PyExc_ValueError,
25568  "Expected a dimension of size %zu, got %zu",
25569  ctx->head->field->type->arraysize[0], ctx->enc_count);
25570  return -1;
25571  }
25572  }
25573  if (!ctx->is_valid_array) {
25574  PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
25575  ctx->head->field->type->ndim, ndim);
25576  return -1;
25577  }
25578  for (i = 0; i < ctx->head->field->type->ndim; i++) {
25579  arraysize *= ctx->head->field->type->arraysize[i];
25580  }
25581  ctx->is_valid_array = 0;
25582  ctx->enc_count = 1;
25583  }
25584  group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
25585  do {
25586  __Pyx_StructField* field = ctx->head->field;
25587  __Pyx_TypeInfo* type = field->type;
25588  if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
25589  size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
25590  } else {
25591  size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
25592  }
25593  if (ctx->enc_packmode == '@') {
25594  size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
25595  size_t align_mod_offset;
25596  if (align_at == 0) return -1;
25597  align_mod_offset = ctx->fmt_offset % align_at;
25598  if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
25599  if (ctx->struct_alignment == 0)
25600  ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
25601  ctx->is_complex);
25602  }
25603  if (type->size != size || type->typegroup != group) {
25604  if (type->typegroup == 'C' && type->fields != NULL) {
25605  size_t parent_offset = ctx->head->parent_offset + field->offset;
25606  ++ctx->head;
25607  ctx->head->field = type->fields;
25608  ctx->head->parent_offset = parent_offset;
25609  continue;
25610  }
25611  if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
25612  } else {
25613  __Pyx_BufFmt_RaiseExpected(ctx);
25614  return -1;
25615  }
25616  }
25617  offset = ctx->head->parent_offset + field->offset;
25618  if (ctx->fmt_offset != offset) {
25619  PyErr_Format(PyExc_ValueError,
25620  "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
25621  (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
25622  return -1;
25623  }
25624  ctx->fmt_offset += size;
25625  if (arraysize)
25626  ctx->fmt_offset += (arraysize - 1) * size;
25627  --ctx->enc_count;
25628  while (1) {
25629  if (field == &ctx->root) {
25630  ctx->head = NULL;
25631  if (ctx->enc_count != 0) {
25632  __Pyx_BufFmt_RaiseExpected(ctx);
25633  return -1;
25634  }
25635  break;
25636  }
25637  ctx->head->field = ++field;
25638  if (field->type == NULL) {
25639  --ctx->head;
25640  field = ctx->head->field;
25641  continue;
25642  } else if (field->type->typegroup == 'S') {
25643  size_t parent_offset = ctx->head->parent_offset + field->offset;
25644  if (field->type->fields->type == NULL) continue;
25645  field = field->type->fields;
25646  ++ctx->head;
25647  ctx->head->field = field;
25648  ctx->head->parent_offset = parent_offset;
25649  break;
25650  } else {
25651  break;
25652  }
25653  }
25654  } while (ctx->enc_count);
25655  ctx->enc_type = 0;
25656  ctx->is_complex = 0;
25657  return 0;
25658 }
25659 static PyObject *
25660 __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
25661 {
25662  const char *ts = *tsp;
25663  int i = 0, number;
25664  int ndim = ctx->head->field->type->ndim;
25665 ;
25666  ++ts;
25667  if (ctx->new_count != 1) {
25668  PyErr_SetString(PyExc_ValueError,
25669  "Cannot handle repeated arrays in format string");
25670  return NULL;
25671  }
25672  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25673  while (*ts && *ts != ')') {
25674  switch (*ts) {
25675  case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue;
25676  default: break;
25677  }
25678  number = __Pyx_BufFmt_ExpectNumber(&ts);
25679  if (number == -1) return NULL;
25680  if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
25681  return PyErr_Format(PyExc_ValueError,
25682  "Expected a dimension of size %zu, got %d",
25683  ctx->head->field->type->arraysize[i], number);
25684  if (*ts != ',' && *ts != ')')
25685  return PyErr_Format(PyExc_ValueError,
25686  "Expected a comma in format string, got '%c'", *ts);
25687  if (*ts == ',') ts++;
25688  i++;
25689  }
25690  if (i != ndim)
25691  return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
25692  ctx->head->field->type->ndim, i);
25693  if (!*ts) {
25694  PyErr_SetString(PyExc_ValueError,
25695  "Unexpected end of format string, expected ')'");
25696  return NULL;
25697  }
25698  ctx->is_valid_array = 1;
25699  ctx->new_count = 1;
25700  *tsp = ++ts;
25701  return Py_None;
25702 }
25703 static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
25704  int got_Z = 0;
25705  while (1) {
25706  switch(*ts) {
25707  case 0:
25708  if (ctx->enc_type != 0 && ctx->head == NULL) {
25709  __Pyx_BufFmt_RaiseExpected(ctx);
25710  return NULL;
25711  }
25712  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25713  if (ctx->head != NULL) {
25714  __Pyx_BufFmt_RaiseExpected(ctx);
25715  return NULL;
25716  }
25717  return ts;
25718  case ' ':
25719  case '\r':
25720  case '\n':
25721  ++ts;
25722  break;
25723  case '<':
25724  if (!__Pyx_Is_Little_Endian()) {
25725  PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
25726  return NULL;
25727  }
25728  ctx->new_packmode = '=';
25729  ++ts;
25730  break;
25731  case '>':
25732  case '!':
25733  if (__Pyx_Is_Little_Endian()) {
25734  PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
25735  return NULL;
25736  }
25737  ctx->new_packmode = '=';
25738  ++ts;
25739  break;
25740  case '=':
25741  case '@':
25742  case '^':
25743  ctx->new_packmode = *ts++;
25744  break;
25745  case 'T':
25746  {
25747  const char* ts_after_sub;
25748  size_t i, struct_count = ctx->new_count;
25749  size_t struct_alignment = ctx->struct_alignment;
25750  ctx->new_count = 1;
25751  ++ts;
25752  if (*ts != '{') {
25753  PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
25754  return NULL;
25755  }
25756  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25757  ctx->enc_type = 0;
25758  ctx->enc_count = 0;
25759  ctx->struct_alignment = 0;
25760  ++ts;
25761  ts_after_sub = ts;
25762  for (i = 0; i != struct_count; ++i) {
25763  ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
25764  if (!ts_after_sub) return NULL;
25765  }
25766  ts = ts_after_sub;
25767  if (struct_alignment) ctx->struct_alignment = struct_alignment;
25768  }
25769  break;
25770  case '}':
25771  {
25772  size_t alignment = ctx->struct_alignment;
25773  ++ts;
25774  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25775  ctx->enc_type = 0;
25776  if (alignment && ctx->fmt_offset % alignment) {
25777  ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
25778  }
25779  }
25780  return ts;
25781  case 'x':
25782  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25783  ctx->fmt_offset += ctx->new_count;
25784  ctx->new_count = 1;
25785  ctx->enc_count = 0;
25786  ctx->enc_type = 0;
25787  ctx->enc_packmode = ctx->new_packmode;
25788  ++ts;
25789  break;
25790  case 'Z':
25791  got_Z = 1;
25792  ++ts;
25793  if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
25794  __Pyx_BufFmt_RaiseUnexpectedChar('Z');
25795  return NULL;
25796  }
25797  CYTHON_FALLTHROUGH;
25798  case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
25799  case 'l': case 'L': case 'q': case 'Q':
25800  case 'f': case 'd': case 'g':
25801  case 'O': case 'p':
25802  if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
25803  ctx->enc_packmode == ctx->new_packmode) {
25804  ctx->enc_count += ctx->new_count;
25805  ctx->new_count = 1;
25806  got_Z = 0;
25807  ++ts;
25808  break;
25809  }
25810  CYTHON_FALLTHROUGH;
25811  case 's':
25812  if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
25813  ctx->enc_count = ctx->new_count;
25814  ctx->enc_packmode = ctx->new_packmode;
25815  ctx->enc_type = *ts;
25816  ctx->is_complex = got_Z;
25817  ++ts;
25818  ctx->new_count = 1;
25819  got_Z = 0;
25820  break;
25821  case ':':
25822  ++ts;
25823  while(*ts != ':') ++ts;
25824  ++ts;
25825  break;
25826  case '(':
25827  if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
25828  break;
25829  default:
25830  {
25831  int number = __Pyx_BufFmt_ExpectNumber(&ts);
25832  if (number == -1) return NULL;
25833  ctx->new_count = (size_t)number;
25834  }
25835  }
25836  }
25837 }
25838 
25839 /* BufferGetAndValidate */
25840  static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
25841  if (unlikely(info->buf == NULL)) return;
25842  if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
25843  __Pyx_ReleaseBuffer(info);
25844 }
25845 static void __Pyx_ZeroBuffer(Py_buffer* buf) {
25846  buf->buf = NULL;
25847  buf->obj = NULL;
25848  buf->strides = __Pyx_zeros;
25849  buf->shape = __Pyx_zeros;
25850  buf->suboffsets = __Pyx_minusones;
25851 }
25852 static int __Pyx__GetBufferAndValidate(
25853  Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags,
25854  int nd, int cast, __Pyx_BufFmt_StackElem* stack)
25855 {
25856  buf->buf = NULL;
25857  if (unlikely(__Pyx_GetBuffer(obj, buf, flags) == -1)) {
25858  __Pyx_ZeroBuffer(buf);
25859  return -1;
25860  }
25861  if (unlikely(buf->ndim != nd)) {
25862  PyErr_Format(PyExc_ValueError,
25863  "Buffer has wrong number of dimensions (expected %d, got %d)",
25864  nd, buf->ndim);
25865  goto fail;
25866  }
25867  if (!cast) {
25868  __Pyx_BufFmt_Context ctx;
25869  __Pyx_BufFmt_Init(&ctx, stack, dtype);
25870  if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
25871  }
25872  if (unlikely((size_t)buf->itemsize != dtype->size)) {
25873  PyErr_Format(PyExc_ValueError,
25874  "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
25875  buf->itemsize, (buf->itemsize > 1) ? "s" : "",
25876  dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
25877  goto fail;
25878  }
25879  if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
25880  return 0;
25881 fail:;
25882  __Pyx_SafeReleaseBuffer(buf);
25883  return -1;
25884 }
25885 
25886 /* BufferIndexError */
25887  static void __Pyx_RaiseBufferIndexError(int axis) {
25888  PyErr_Format(PyExc_IndexError,
25889  "Out of bounds on buffer access (axis %d)", axis);
25890 }
25891 
25892 /* PyErrFetchRestore */
25893  #if CYTHON_FAST_THREAD_STATE
25894 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
25895  PyObject *tmp_type, *tmp_value, *tmp_tb;
25896  tmp_type = tstate->curexc_type;
25897  tmp_value = tstate->curexc_value;
25898  tmp_tb = tstate->curexc_traceback;
25899  tstate->curexc_type = type;
25900  tstate->curexc_value = value;
25901  tstate->curexc_traceback = tb;
25902  Py_XDECREF(tmp_type);
25903  Py_XDECREF(tmp_value);
25904  Py_XDECREF(tmp_tb);
25905 }
25906 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
25907  *type = tstate->curexc_type;
25908  *value = tstate->curexc_value;
25909  *tb = tstate->curexc_traceback;
25910  tstate->curexc_type = 0;
25911  tstate->curexc_value = 0;
25912  tstate->curexc_traceback = 0;
25913 }
25914 #endif
25915 
25916 /* DictGetItem */
25917  #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
25918 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
25919  PyObject *value;
25920  value = PyDict_GetItemWithError(d, key);
25921  if (unlikely(!value)) {
25922  if (!PyErr_Occurred()) {
25923  if (unlikely(PyTuple_Check(key))) {
25924  PyObject* args = PyTuple_Pack(1, key);
25925  if (likely(args)) {
25926  PyErr_SetObject(PyExc_KeyError, args);
25927  Py_DECREF(args);
25928  }
25929  } else {
25930  PyErr_SetObject(PyExc_KeyError, key);
25931  }
25932  }
25933  return NULL;
25934  }
25935  Py_INCREF(value);
25936  return value;
25937 }
25938 #endif
25939 
25940 /* GetItemInt */
25941  static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
25942  PyObject *r;
25943  if (!j) return NULL;
25944  r = PyObject_GetItem(o, j);
25945  Py_DECREF(j);
25946  return r;
25947 }
25948 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
25949  CYTHON_NCP_UNUSED int wraparound,
25950  CYTHON_NCP_UNUSED int boundscheck) {
25951 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
25952  Py_ssize_t wrapped_i = i;
25953  if (wraparound & unlikely(i < 0)) {
25954  wrapped_i += PyList_GET_SIZE(o);
25955  }
25956  if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
25957  PyObject *r = PyList_GET_ITEM(o, wrapped_i);
25958  Py_INCREF(r);
25959  return r;
25960  }
25961  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
25962 #else
25963  return PySequence_GetItem(o, i);
25964 #endif
25965 }
25966 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
25967  CYTHON_NCP_UNUSED int wraparound,
25968  CYTHON_NCP_UNUSED int boundscheck) {
25969 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
25970  Py_ssize_t wrapped_i = i;
25971  if (wraparound & unlikely(i < 0)) {
25972  wrapped_i += PyTuple_GET_SIZE(o);
25973  }
25974  if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
25975  PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
25976  Py_INCREF(r);
25977  return r;
25978  }
25979  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
25980 #else
25981  return PySequence_GetItem(o, i);
25982 #endif
25983 }
25984 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
25985  CYTHON_NCP_UNUSED int wraparound,
25986  CYTHON_NCP_UNUSED int boundscheck) {
25987 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
25988  if (is_list || PyList_CheckExact(o)) {
25989  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
25990  if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
25991  PyObject *r = PyList_GET_ITEM(o, n);
25992  Py_INCREF(r);
25993  return r;
25994  }
25995  }
25996  else if (PyTuple_CheckExact(o)) {
25997  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
25998  if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
25999  PyObject *r = PyTuple_GET_ITEM(o, n);
26000  Py_INCREF(r);
26001  return r;
26002  }
26003  } else {
26004  PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
26005  if (likely(m && m->sq_item)) {
26006  if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
26007  Py_ssize_t l = m->sq_length(o);
26008  if (likely(l >= 0)) {
26009  i += l;
26010  } else {
26011  if (!PyErr_ExceptionMatches(PyExc_OverflowError))
26012  return NULL;
26013  PyErr_Clear();
26014  }
26015  }
26016  return m->sq_item(o, i);
26017  }
26018  }
26019 #else
26020  if (is_list || PySequence_Check(o)) {
26021  return PySequence_GetItem(o, i);
26022  }
26023 #endif
26024  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
26025 }
26026 
26027 /* ObjectGetItem */
26028  #if CYTHON_USE_TYPE_SLOTS
26029 static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) {
26030  PyObject *runerr;
26031  Py_ssize_t key_value;
26032  PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence;
26033  if (unlikely(!(m && m->sq_item))) {
26034  PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name);
26035  return NULL;
26036  }
26037  key_value = __Pyx_PyIndex_AsSsize_t(index);
26038  if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) {
26039  return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1);
26040  }
26041  if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) {
26042  PyErr_Clear();
26043  PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name);
26044  }
26045  return NULL;
26046 }
26047 static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) {
26048  PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping;
26049  if (likely(m && m->mp_subscript)) {
26050  return m->mp_subscript(obj, key);
26051  }
26052  return __Pyx_PyObject_GetIndex(obj, key);
26053 }
26054 #endif
26055 
26056 /* PyFloatBinop */
26057  #if !CYTHON_COMPILING_IN_PYPY
26058 static PyObject* __Pyx_PyFloat_AddObjC(PyObject *op1, PyObject *op2, double floatval, int inplace, int zerodivision_check) {
26059  const double b = floatval;
26060  double a, result;
26061  (void)inplace;
26062  (void)zerodivision_check;
26063  if (likely(PyFloat_CheckExact(op1))) {
26064  a = PyFloat_AS_DOUBLE(op1);
26065 
26066  } else
26067  #if PY_MAJOR_VERSION < 3
26068  if (likely(PyInt_CheckExact(op1))) {
26069  a = (double) PyInt_AS_LONG(op1);
26070 
26071  } else
26072  #endif
26073  if (likely(PyLong_CheckExact(op1))) {
26074  #if CYTHON_USE_PYLONG_INTERNALS
26075  const digit* digits = ((PyLongObject*)op1)->ob_digit;
26076  const Py_ssize_t size = Py_SIZE(op1);
26077  switch (size) {
26078  case 0: a = 0.0; break;
26079  case -1: a = -(double) digits[0]; break;
26080  case 1: a = (double) digits[0]; break;
26081  case -2:
26082  case 2:
26083  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (1 * PyLong_SHIFT < 53))) {
26084  a = (double) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
26085  if ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53) || (a < (double) ((PY_LONG_LONG)1 << 53))) {
26086  if (size == -2)
26087  a = -a;
26088  break;
26089  }
26090  }
26091  CYTHON_FALLTHROUGH;
26092  case -3:
26093  case 3:
26094  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53))) {
26095  a = (double) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
26096  if ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53) || (a < (double) ((PY_LONG_LONG)1 << 53))) {
26097  if (size == -3)
26098  a = -a;
26099  break;
26100  }
26101  }
26102  CYTHON_FALLTHROUGH;
26103  case -4:
26104  case 4:
26105  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53))) {
26106  a = (double) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
26107  if ((8 * sizeof(unsigned long) < 53) || (4 * PyLong_SHIFT < 53) || (a < (double) ((PY_LONG_LONG)1 << 53))) {
26108  if (size == -4)
26109  a = -a;
26110  break;
26111  }
26112  }
26113  CYTHON_FALLTHROUGH;
26114  default:
26115  #else
26116  {
26117  #endif
26118  a = PyLong_AsDouble(op1);
26119  if (unlikely(a == -1.0 && PyErr_Occurred())) return NULL;
26120 
26121  }
26122  } else {
26123  return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
26124  }
26125 
26126  PyFPE_START_PROTECT("add", return NULL)
26127  result = a + b;
26128  PyFPE_END_PROTECT(result)
26129  return PyFloat_FromDouble(result);
26130 }
26131 #endif
26132 
26133 /* PyFunctionFastCall */
26134  #if CYTHON_FAST_PYCALL
26135 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
26136  PyObject *globals) {
26137  PyFrameObject *f;
26138  PyThreadState *tstate = __Pyx_PyThreadState_Current;
26139  PyObject **fastlocals;
26140  Py_ssize_t i;
26141  PyObject *result;
26142  assert(globals != NULL);
26143  /* XXX Perhaps we should create a specialized
26144  PyFrame_New() that doesn't take locals, but does
26145  take builtins without sanity checking them.
26146  */
26147  assert(tstate != NULL);
26148  f = PyFrame_New(tstate, co, globals, NULL);
26149  if (f == NULL) {
26150  return NULL;
26151  }
26152  fastlocals = __Pyx_PyFrame_GetLocalsplus(f);
26153  for (i = 0; i < na; i++) {
26154  Py_INCREF(*args);
26155  fastlocals[i] = *args++;
26156  }
26157  result = PyEval_EvalFrameEx(f,0);
26158  ++tstate->recursion_depth;
26159  Py_DECREF(f);
26160  --tstate->recursion_depth;
26161  return result;
26162 }
26163 #if 1 || PY_VERSION_HEX < 0x030600B1
26164 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
26165  PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
26166  PyObject *globals = PyFunction_GET_GLOBALS(func);
26167  PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
26168  PyObject *closure;
26169 #if PY_MAJOR_VERSION >= 3
26170  PyObject *kwdefs;
26171 #endif
26172  PyObject *kwtuple, **k;
26173  PyObject **d;
26174  Py_ssize_t nd;
26175  Py_ssize_t nk;
26176  PyObject *result;
26177  assert(kwargs == NULL || PyDict_Check(kwargs));
26178  nk = kwargs ? PyDict_Size(kwargs) : 0;
26179  if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
26180  return NULL;
26181  }
26182  if (
26183 #if PY_MAJOR_VERSION >= 3
26184  co->co_kwonlyargcount == 0 &&
26185 #endif
26186  likely(kwargs == NULL || nk == 0) &&
26187  co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
26188  if (argdefs == NULL && co->co_argcount == nargs) {
26189  result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
26190  goto done;
26191  }
26192  else if (nargs == 0 && argdefs != NULL
26193  && co->co_argcount == Py_SIZE(argdefs)) {
26194  /* function called with no arguments, but all parameters have
26195  a default value: use default values as arguments .*/
26196  args = &PyTuple_GET_ITEM(argdefs, 0);
26197  result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
26198  goto done;
26199  }
26200  }
26201  if (kwargs != NULL) {
26202  Py_ssize_t pos, i;
26203  kwtuple = PyTuple_New(2 * nk);
26204  if (kwtuple == NULL) {
26205  result = NULL;
26206  goto done;
26207  }
26208  k = &PyTuple_GET_ITEM(kwtuple, 0);
26209  pos = i = 0;
26210  while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
26211  Py_INCREF(k[i]);
26212  Py_INCREF(k[i+1]);
26213  i += 2;
26214  }
26215  nk = i / 2;
26216  }
26217  else {
26218  kwtuple = NULL;
26219  k = NULL;
26220  }
26221  closure = PyFunction_GET_CLOSURE(func);
26222 #if PY_MAJOR_VERSION >= 3
26223  kwdefs = PyFunction_GET_KW_DEFAULTS(func);
26224 #endif
26225  if (argdefs != NULL) {
26226  d = &PyTuple_GET_ITEM(argdefs, 0);
26227  nd = Py_SIZE(argdefs);
26228  }
26229  else {
26230  d = NULL;
26231  nd = 0;
26232  }
26233 #if PY_MAJOR_VERSION >= 3
26234  result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
26235  args, (int)nargs,
26236  k, (int)nk,
26237  d, (int)nd, kwdefs, closure);
26238 #else
26239  result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
26240  args, (int)nargs,
26241  k, (int)nk,
26242  d, (int)nd, closure);
26243 #endif
26244  Py_XDECREF(kwtuple);
26245 done:
26246  Py_LeaveRecursiveCall();
26247  return result;
26248 }
26249 #endif
26250 #endif
26251 
26252 /* PyCFunctionFastCall */
26253  #if CYTHON_FAST_PYCCALL
26254 static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
26255  PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
26256  PyCFunction meth = PyCFunction_GET_FUNCTION(func);
26257  PyObject *self = PyCFunction_GET_SELF(func);
26258  int flags = PyCFunction_GET_FLAGS(func);
26259  assert(PyCFunction_Check(func));
26260  assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)));
26261  assert(nargs >= 0);
26262  assert(nargs == 0 || args != NULL);
26263  /* _PyCFunction_FastCallDict() must not be called with an exception set,
26264  because it may clear it (directly or indirectly) and so the
26265  caller loses its exception */
26266  assert(!PyErr_Occurred());
26267  if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) {
26268  return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL);
26269  } else {
26270  return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs);
26271  }
26272 }
26273 #endif
26274 
26275 /* PyObjectCall */
26276  #if CYTHON_COMPILING_IN_CPYTHON
26277 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
26278  PyObject *result;
26279  ternaryfunc call = func->ob_type->tp_call;
26280  if (unlikely(!call))
26281  return PyObject_Call(func, arg, kw);
26282  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
26283  return NULL;
26284  result = (*call)(func, arg, kw);
26285  Py_LeaveRecursiveCall();
26286  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
26287  PyErr_SetString(
26288  PyExc_SystemError,
26289  "NULL result without error in PyObject_Call");
26290  }
26291  return result;
26292 }
26293 #endif
26294 
26295 /* PyDictVersioning */
26296  #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
26297 static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
26298  PyObject *dict = Py_TYPE(obj)->tp_dict;
26299  return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
26300 }
26301 static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
26302  PyObject **dictptr = NULL;
26303  Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
26304  if (offset) {
26305 #if CYTHON_COMPILING_IN_CPYTHON
26306  dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
26307 #else
26308  dictptr = _PyObject_GetDictPtr(obj);
26309 #endif
26310  }
26311  return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
26312 }
26313 static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
26314  PyObject *dict = Py_TYPE(obj)->tp_dict;
26315  if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
26316  return 0;
26317  return obj_dict_version == __Pyx_get_object_dict_version(obj);
26318 }
26319 #endif
26320 
26321 /* GetModuleGlobalName */
26322  #if CYTHON_USE_DICT_VERSIONS
26323 static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
26324 #else
26325 static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
26326 #endif
26327 {
26328  PyObject *result;
26329 #if !CYTHON_AVOID_BORROWED_REFS
26330 #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
26331  result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
26332  __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
26333  if (likely(result)) {
26334  return __Pyx_NewRef(result);
26335  } else if (unlikely(PyErr_Occurred())) {
26336  return NULL;
26337  }
26338 #else
26339  result = PyDict_GetItem(__pyx_d, name);
26340  __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
26341  if (likely(result)) {
26342  return __Pyx_NewRef(result);
26343  }
26344 #endif
26345 #else
26346  result = PyObject_GetItem(__pyx_d, name);
26347  __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
26348  if (likely(result)) {
26349  return __Pyx_NewRef(result);
26350  }
26351  PyErr_Clear();
26352 #endif
26353  return __Pyx_GetBuiltinName(name);
26354 }
26355 
26356 /* ExtTypeTest */
26357  static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
26358  if (unlikely(!type)) {
26359  PyErr_SetString(PyExc_SystemError, "Missing type object");
26360  return 0;
26361  }
26362  if (likely(__Pyx_TypeCheck(obj, type)))
26363  return 1;
26364  PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
26365  Py_TYPE(obj)->tp_name, type->tp_name);
26366  return 0;
26367 }
26368 
26369 /* PyObjectCall2Args */
26370  static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
26371  PyObject *args, *result = NULL;
26372  #if CYTHON_FAST_PYCALL
26373  if (PyFunction_Check(function)) {
26374  PyObject *args[2] = {arg1, arg2};
26375  return __Pyx_PyFunction_FastCall(function, args, 2);
26376  }
26377  #endif
26378  #if CYTHON_FAST_PYCCALL
26379  if (__Pyx_PyFastCFunction_Check(function)) {
26380  PyObject *args[2] = {arg1, arg2};
26381  return __Pyx_PyCFunction_FastCall(function, args, 2);
26382  }
26383  #endif
26384  args = PyTuple_New(2);
26385  if (unlikely(!args)) goto done;
26386  Py_INCREF(arg1);
26387  PyTuple_SET_ITEM(args, 0, arg1);
26388  Py_INCREF(arg2);
26389  PyTuple_SET_ITEM(args, 1, arg2);
26390  Py_INCREF(function);
26391  result = __Pyx_PyObject_Call(function, args, NULL);
26392  Py_DECREF(args);
26393  Py_DECREF(function);
26394 done:
26395  return result;
26396 }
26397 
26398 /* PyObjectCallMethO */
26399  #if CYTHON_COMPILING_IN_CPYTHON
26400 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
26401  PyObject *self, *result;
26402  PyCFunction cfunc;
26403  cfunc = PyCFunction_GET_FUNCTION(func);
26404  self = PyCFunction_GET_SELF(func);
26405  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
26406  return NULL;
26407  result = cfunc(self, arg);
26408  Py_LeaveRecursiveCall();
26409  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
26410  PyErr_SetString(
26411  PyExc_SystemError,
26412  "NULL result without error in PyObject_Call");
26413  }
26414  return result;
26415 }
26416 #endif
26417 
26418 /* PyObjectCallOneArg */
26419  #if CYTHON_COMPILING_IN_CPYTHON
26420 static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
26421  PyObject *result;
26422  PyObject *args = PyTuple_New(1);
26423  if (unlikely(!args)) return NULL;
26424  Py_INCREF(arg);
26425  PyTuple_SET_ITEM(args, 0, arg);
26426  result = __Pyx_PyObject_Call(func, args, NULL);
26427  Py_DECREF(args);
26428  return result;
26429 }
26430 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
26431 #if CYTHON_FAST_PYCALL
26432  if (PyFunction_Check(func)) {
26433  return __Pyx_PyFunction_FastCall(func, &arg, 1);
26434  }
26435 #endif
26436  if (likely(PyCFunction_Check(func))) {
26437  if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
26438  return __Pyx_PyObject_CallMethO(func, arg);
26439 #if CYTHON_FAST_PYCCALL
26440  } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) {
26441  return __Pyx_PyCFunction_FastCall(func, &arg, 1);
26442 #endif
26443  }
26444  }
26445  return __Pyx__PyObject_CallOneArg(func, arg);
26446 }
26447 #else
26448 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
26449  PyObject *result;
26450  PyObject *args = PyTuple_Pack(1, arg);
26451  if (unlikely(!args)) return NULL;
26452  result = __Pyx_PyObject_Call(func, args, NULL);
26453  Py_DECREF(args);
26454  return result;
26455 }
26456 #endif
26457 
26458 /* pyobject_as_double */
26459  static double __Pyx__PyObject_AsDouble(PyObject* obj) {
26460  PyObject* float_value;
26461 #if !CYTHON_USE_TYPE_SLOTS
26462  float_value = PyNumber_Float(obj); if ((0)) goto bad;
26463 #else
26464  PyNumberMethods *nb = Py_TYPE(obj)->tp_as_number;
26465  if (likely(nb) && likely(nb->nb_float)) {
26466  float_value = nb->nb_float(obj);
26467  if (likely(float_value) && unlikely(!PyFloat_Check(float_value))) {
26468  PyErr_Format(PyExc_TypeError,
26469  "__float__ returned non-float (type %.200s)",
26470  Py_TYPE(float_value)->tp_name);
26471  Py_DECREF(float_value);
26472  goto bad;
26473  }
26474  } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
26475 #if PY_MAJOR_VERSION >= 3
26476  float_value = PyFloat_FromString(obj);
26477 #else
26478  float_value = PyFloat_FromString(obj, 0);
26479 #endif
26480  } else {
26481  PyObject* args = PyTuple_New(1);
26482  if (unlikely(!args)) goto bad;
26483  PyTuple_SET_ITEM(args, 0, obj);
26484  float_value = PyObject_Call((PyObject*)&PyFloat_Type, args, 0);
26485  PyTuple_SET_ITEM(args, 0, 0);
26486  Py_DECREF(args);
26487  }
26488 #endif
26489  if (likely(float_value)) {
26490  double value = PyFloat_AS_DOUBLE(float_value);
26491  Py_DECREF(float_value);
26492  return value;
26493  }
26494 bad:
26495  return (double)-1;
26496 }
26497 
26498 /* RaiseException */
26499  #if PY_MAJOR_VERSION < 3
26500 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
26501  CYTHON_UNUSED PyObject *cause) {
26502  __Pyx_PyThreadState_declare
26503  Py_XINCREF(type);
26504  if (!value || value == Py_None)
26505  value = NULL;
26506  else
26507  Py_INCREF(value);
26508  if (!tb || tb == Py_None)
26509  tb = NULL;
26510  else {
26511  Py_INCREF(tb);
26512  if (!PyTraceBack_Check(tb)) {
26513  PyErr_SetString(PyExc_TypeError,
26514  "raise: arg 3 must be a traceback or None");
26515  goto raise_error;
26516  }
26517  }
26518  if (PyType_Check(type)) {
26519 #if CYTHON_COMPILING_IN_PYPY
26520  if (!value) {
26521  Py_INCREF(Py_None);
26522  value = Py_None;
26523  }
26524 #endif
26525  PyErr_NormalizeException(&type, &value, &tb);
26526  } else {
26527  if (value) {
26528  PyErr_SetString(PyExc_TypeError,
26529  "instance exception may not have a separate value");
26530  goto raise_error;
26531  }
26532  value = type;
26533  type = (PyObject*) Py_TYPE(type);
26534  Py_INCREF(type);
26535  if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
26536  PyErr_SetString(PyExc_TypeError,
26537  "raise: exception class must be a subclass of BaseException");
26538  goto raise_error;
26539  }
26540  }
26541  __Pyx_PyThreadState_assign
26542  __Pyx_ErrRestore(type, value, tb);
26543  return;
26544 raise_error:
26545  Py_XDECREF(value);
26546  Py_XDECREF(type);
26547  Py_XDECREF(tb);
26548  return;
26549 }
26550 #else
26551 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
26552  PyObject* owned_instance = NULL;
26553  if (tb == Py_None) {
26554  tb = 0;
26555  } else if (tb && !PyTraceBack_Check(tb)) {
26556  PyErr_SetString(PyExc_TypeError,
26557  "raise: arg 3 must be a traceback or None");
26558  goto bad;
26559  }
26560  if (value == Py_None)
26561  value = 0;
26562  if (PyExceptionInstance_Check(type)) {
26563  if (value) {
26564  PyErr_SetString(PyExc_TypeError,
26565  "instance exception may not have a separate value");
26566  goto bad;
26567  }
26568  value = type;
26569  type = (PyObject*) Py_TYPE(value);
26570  } else if (PyExceptionClass_Check(type)) {
26571  PyObject *instance_class = NULL;
26572  if (value && PyExceptionInstance_Check(value)) {
26573  instance_class = (PyObject*) Py_TYPE(value);
26574  if (instance_class != type) {
26575  int is_subclass = PyObject_IsSubclass(instance_class, type);
26576  if (!is_subclass) {
26577  instance_class = NULL;
26578  } else if (unlikely(is_subclass == -1)) {
26579  goto bad;
26580  } else {
26581  type = instance_class;
26582  }
26583  }
26584  }
26585  if (!instance_class) {
26586  PyObject *args;
26587  if (!value)
26588  args = PyTuple_New(0);
26589  else if (PyTuple_Check(value)) {
26590  Py_INCREF(value);
26591  args = value;
26592  } else
26593  args = PyTuple_Pack(1, value);
26594  if (!args)
26595  goto bad;
26596  owned_instance = PyObject_Call(type, args, NULL);
26597  Py_DECREF(args);
26598  if (!owned_instance)
26599  goto bad;
26600  value = owned_instance;
26601  if (!PyExceptionInstance_Check(value)) {
26602  PyErr_Format(PyExc_TypeError,
26603  "calling %R should have returned an instance of "
26604  "BaseException, not %R",
26605  type, Py_TYPE(value));
26606  goto bad;
26607  }
26608  }
26609  } else {
26610  PyErr_SetString(PyExc_TypeError,
26611  "raise: exception class must be a subclass of BaseException");
26612  goto bad;
26613  }
26614  if (cause) {
26615  PyObject *fixed_cause;
26616  if (cause == Py_None) {
26617  fixed_cause = NULL;
26618  } else if (PyExceptionClass_Check(cause)) {
26619  fixed_cause = PyObject_CallObject(cause, NULL);
26620  if (fixed_cause == NULL)
26621  goto bad;
26622  } else if (PyExceptionInstance_Check(cause)) {
26623  fixed_cause = cause;
26624  Py_INCREF(fixed_cause);
26625  } else {
26626  PyErr_SetString(PyExc_TypeError,
26627  "exception causes must derive from "
26628  "BaseException");
26629  goto bad;
26630  }
26631  PyException_SetCause(value, fixed_cause);
26632  }
26633  PyErr_SetObject(type, value);
26634  if (tb) {
26635 #if CYTHON_COMPILING_IN_PYPY
26636  PyObject *tmp_type, *tmp_value, *tmp_tb;
26637  PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
26638  Py_INCREF(tb);
26639  PyErr_Restore(tmp_type, tmp_value, tb);
26640  Py_XDECREF(tmp_tb);
26641 #else
26642  PyThreadState *tstate = __Pyx_PyThreadState_Current;
26643  PyObject* tmp_tb = tstate->curexc_traceback;
26644  if (tb != tmp_tb) {
26645  Py_INCREF(tb);
26646  tstate->curexc_traceback = tb;
26647  Py_XDECREF(tmp_tb);
26648  }
26649 #endif
26650  }
26651 bad:
26652  Py_XDECREF(owned_instance);
26653  return;
26654 }
26655 #endif
26656 
26657 /* RaiseTooManyValuesToUnpack */
26658  static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
26659  PyErr_Format(PyExc_ValueError,
26660  "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
26661 }
26662 
26663 /* RaiseNeedMoreValuesToUnpack */
26664  static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
26665  PyErr_Format(PyExc_ValueError,
26666  "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
26667  index, (index == 1) ? "" : "s");
26668 }
26669 
26670 /* RaiseNoneIterError */
26671  static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
26672  PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
26673 }
26674 
26675 /* GetTopmostException */
26676  #if CYTHON_USE_EXC_INFO_STACK
26677 static _PyErr_StackItem *
26678 __Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
26679 {
26680  _PyErr_StackItem *exc_info = tstate->exc_info;
26681  while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
26682  exc_info->previous_item != NULL)
26683  {
26684  exc_info = exc_info->previous_item;
26685  }
26686  return exc_info;
26687 }
26688 #endif
26689 
26690 /* SaveResetException */
26691  #if CYTHON_FAST_THREAD_STATE
26692 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
26693  #if CYTHON_USE_EXC_INFO_STACK
26694  _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
26695  *type = exc_info->exc_type;
26696  *value = exc_info->exc_value;
26697  *tb = exc_info->exc_traceback;
26698  #else
26699  *type = tstate->exc_type;
26700  *value = tstate->exc_value;
26701  *tb = tstate->exc_traceback;
26702  #endif
26703  Py_XINCREF(*type);
26704  Py_XINCREF(*value);
26705  Py_XINCREF(*tb);
26706 }
26707 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
26708  PyObject *tmp_type, *tmp_value, *tmp_tb;
26709  #if CYTHON_USE_EXC_INFO_STACK
26710  _PyErr_StackItem *exc_info = tstate->exc_info;
26711  tmp_type = exc_info->exc_type;
26712  tmp_value = exc_info->exc_value;
26713  tmp_tb = exc_info->exc_traceback;
26714  exc_info->exc_type = type;
26715  exc_info->exc_value = value;
26716  exc_info->exc_traceback = tb;
26717  #else
26718  tmp_type = tstate->exc_type;
26719  tmp_value = tstate->exc_value;
26720  tmp_tb = tstate->exc_traceback;
26721  tstate->exc_type = type;
26722  tstate->exc_value = value;
26723  tstate->exc_traceback = tb;
26724  #endif
26725  Py_XDECREF(tmp_type);
26726  Py_XDECREF(tmp_value);
26727  Py_XDECREF(tmp_tb);
26728 }
26729 #endif
26730 
26731 /* PyErrExceptionMatches */
26732  #if CYTHON_FAST_THREAD_STATE
26733 static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
26734  Py_ssize_t i, n;
26735  n = PyTuple_GET_SIZE(tuple);
26736 #if PY_MAJOR_VERSION >= 3
26737  for (i=0; i<n; i++) {
26738  if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
26739  }
26740 #endif
26741  for (i=0; i<n; i++) {
26742  if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
26743  }
26744  return 0;
26745 }
26746 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
26747  PyObject *exc_type = tstate->curexc_type;
26748  if (exc_type == err) return 1;
26749  if (unlikely(!exc_type)) return 0;
26750  if (unlikely(PyTuple_Check(err)))
26751  return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
26752  return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
26753 }
26754 #endif
26755 
26756 /* GetException */
26757  #if CYTHON_FAST_THREAD_STATE
26758 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
26759 #else
26760 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
26761 #endif
26762 {
26763  PyObject *local_type, *local_value, *local_tb;
26764 #if CYTHON_FAST_THREAD_STATE
26765  PyObject *tmp_type, *tmp_value, *tmp_tb;
26766  local_type = tstate->curexc_type;
26767  local_value = tstate->curexc_value;
26768  local_tb = tstate->curexc_traceback;
26769  tstate->curexc_type = 0;
26770  tstate->curexc_value = 0;
26771  tstate->curexc_traceback = 0;
26772 #else
26773  PyErr_Fetch(&local_type, &local_value, &local_tb);
26774 #endif
26775  PyErr_NormalizeException(&local_type, &local_value, &local_tb);
26776 #if CYTHON_FAST_THREAD_STATE
26777  if (unlikely(tstate->curexc_type))
26778 #else
26779  if (unlikely(PyErr_Occurred()))
26780 #endif
26781  goto bad;
26782  #if PY_MAJOR_VERSION >= 3
26783  if (local_tb) {
26784  if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
26785  goto bad;
26786  }
26787  #endif
26788  Py_XINCREF(local_tb);
26789  Py_XINCREF(local_type);
26790  Py_XINCREF(local_value);
26791  *type = local_type;
26792  *value = local_value;
26793  *tb = local_tb;
26794 #if CYTHON_FAST_THREAD_STATE
26795  #if CYTHON_USE_EXC_INFO_STACK
26796  {
26797  _PyErr_StackItem *exc_info = tstate->exc_info;
26798  tmp_type = exc_info->exc_type;
26799  tmp_value = exc_info->exc_value;
26800  tmp_tb = exc_info->exc_traceback;
26801  exc_info->exc_type = local_type;
26802  exc_info->exc_value = local_value;
26803  exc_info->exc_traceback = local_tb;
26804  }
26805  #else
26806  tmp_type = tstate->exc_type;
26807  tmp_value = tstate->exc_value;
26808  tmp_tb = tstate->exc_traceback;
26809  tstate->exc_type = local_type;
26810  tstate->exc_value = local_value;
26811  tstate->exc_traceback = local_tb;
26812  #endif
26813  Py_XDECREF(tmp_type);
26814  Py_XDECREF(tmp_value);
26815  Py_XDECREF(tmp_tb);
26816 #else
26817  PyErr_SetExcInfo(local_type, local_value, local_tb);
26818 #endif
26819  return 0;
26820 bad:
26821  *type = 0;
26822  *value = 0;
26823  *tb = 0;
26824  Py_XDECREF(local_type);
26825  Py_XDECREF(local_value);
26826  Py_XDECREF(local_tb);
26827  return -1;
26828 }
26829 
26830 /* TypeImport */
26831  #ifndef __PYX_HAVE_RT_ImportType
26832 #define __PYX_HAVE_RT_ImportType
26833 static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
26834  size_t size, enum __Pyx_ImportType_CheckSize check_size)
26835 {
26836  PyObject *result = 0;
26837  char warning[200];
26838  Py_ssize_t basicsize;
26839 #ifdef Py_LIMITED_API
26840  PyObject *py_basicsize;
26841 #endif
26842  result = PyObject_GetAttrString(module, class_name);
26843  if (!result)
26844  goto bad;
26845  if (!PyType_Check(result)) {
26846  PyErr_Format(PyExc_TypeError,
26847  "%.200s.%.200s is not a type object",
26848  module_name, class_name);
26849  goto bad;
26850  }
26851 #ifndef Py_LIMITED_API
26852  basicsize = ((PyTypeObject *)result)->tp_basicsize;
26853 #else
26854  py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
26855  if (!py_basicsize)
26856  goto bad;
26857  basicsize = PyLong_AsSsize_t(py_basicsize);
26858  Py_DECREF(py_basicsize);
26859  py_basicsize = 0;
26860  if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
26861  goto bad;
26862 #endif
26863  if ((size_t)basicsize < size) {
26864  PyErr_Format(PyExc_ValueError,
26865  "%.200s.%.200s size changed, may indicate binary incompatibility. "
26866  "Expected %zd from C header, got %zd from PyObject",
26867  module_name, class_name, size, basicsize);
26868  goto bad;
26869  }
26870  if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
26871  PyErr_Format(PyExc_ValueError,
26872  "%.200s.%.200s size changed, may indicate binary incompatibility. "
26873  "Expected %zd from C header, got %zd from PyObject",
26874  module_name, class_name, size, basicsize);
26875  goto bad;
26876  }
26877  else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
26878  PyOS_snprintf(warning, sizeof(warning),
26879  "%s.%s size changed, may indicate binary incompatibility. "
26880  "Expected %zd from C header, got %zd from PyObject",
26881  module_name, class_name, size, basicsize);
26882  if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
26883  }
26884  return (PyTypeObject *)result;
26885 bad:
26886  Py_XDECREF(result);
26887  return NULL;
26888 }
26889 #endif
26890 
26891 /* Import */
26892  static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
26893  PyObject *empty_list = 0;
26894  PyObject *module = 0;
26895  PyObject *global_dict = 0;
26896  PyObject *empty_dict = 0;
26897  PyObject *list;
26898  #if PY_MAJOR_VERSION < 3
26899  PyObject *py_import;
26900  py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
26901  if (!py_import)
26902  goto bad;
26903  #endif
26904  if (from_list)
26905  list = from_list;
26906  else {
26907  empty_list = PyList_New(0);
26908  if (!empty_list)
26909  goto bad;
26910  list = empty_list;
26911  }
26912  global_dict = PyModule_GetDict(__pyx_m);
26913  if (!global_dict)
26914  goto bad;
26915  empty_dict = PyDict_New();
26916  if (!empty_dict)
26917  goto bad;
26918  {
26919  #if PY_MAJOR_VERSION >= 3
26920  if (level == -1) {
26921  if (strchr(__Pyx_MODULE_NAME, '.')) {
26922  module = PyImport_ImportModuleLevelObject(
26923  name, global_dict, empty_dict, list, 1);
26924  if (!module) {
26925  if (!PyErr_ExceptionMatches(PyExc_ImportError))
26926  goto bad;
26927  PyErr_Clear();
26928  }
26929  }
26930  level = 0;
26931  }
26932  #endif
26933  if (!module) {
26934  #if PY_MAJOR_VERSION < 3
26935  PyObject *py_level = PyInt_FromLong(level);
26936  if (!py_level)
26937  goto bad;
26938  module = PyObject_CallFunctionObjArgs(py_import,
26939  name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
26940  Py_DECREF(py_level);
26941  #else
26942  module = PyImport_ImportModuleLevelObject(
26943  name, global_dict, empty_dict, list, level);
26944  #endif
26945  }
26946  }
26947 bad:
26948  #if PY_MAJOR_VERSION < 3
26949  Py_XDECREF(py_import);
26950  #endif
26951  Py_XDECREF(empty_list);
26952  Py_XDECREF(empty_dict);
26953  return module;
26954 }
26955 
26956 /* CLineInTraceback */
26957  #ifndef CYTHON_CLINE_IN_TRACEBACK
26958 static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
26959  PyObject *use_cline;
26960  PyObject *ptype, *pvalue, *ptraceback;
26961 #if CYTHON_COMPILING_IN_CPYTHON
26962  PyObject **cython_runtime_dict;
26963 #endif
26964  if (unlikely(!__pyx_cython_runtime)) {
26965  return c_line;
26966  }
26967  __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
26968 #if CYTHON_COMPILING_IN_CPYTHON
26969  cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
26970  if (likely(cython_runtime_dict)) {
26971  __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
26972  use_cline, *cython_runtime_dict,
26973  __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
26974  } else
26975 #endif
26976  {
26977  PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
26978  if (use_cline_obj) {
26979  use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
26980  Py_DECREF(use_cline_obj);
26981  } else {
26982  PyErr_Clear();
26983  use_cline = NULL;
26984  }
26985  }
26986  if (!use_cline) {
26987  c_line = 0;
26988  PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
26989  }
26990  else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
26991  c_line = 0;
26992  }
26993  __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
26994  return c_line;
26995 }
26996 #endif
26997 
26998 /* CodeObjectCache */
26999  static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
27000  int start = 0, mid = 0, end = count - 1;
27001  if (end >= 0 && code_line > entries[end].code_line) {
27002  return count;
27003  }
27004  while (start < end) {
27005  mid = start + (end - start) / 2;
27006  if (code_line < entries[mid].code_line) {
27007  end = mid;
27008  } else if (code_line > entries[mid].code_line) {
27009  start = mid + 1;
27010  } else {
27011  return mid;
27012  }
27013  }
27014  if (code_line <= entries[mid].code_line) {
27015  return mid;
27016  } else {
27017  return mid + 1;
27018  }
27019 }
27020 static PyCodeObject *__pyx_find_code_object(int code_line) {
27021  PyCodeObject* code_object;
27022  int pos;
27023  if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
27024  return NULL;
27025  }
27026  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
27027  if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
27028  return NULL;
27029  }
27030  code_object = __pyx_code_cache.entries[pos].code_object;
27031  Py_INCREF(code_object);
27032  return code_object;
27033 }
27034 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
27035  int pos, i;
27036  __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
27037  if (unlikely(!code_line)) {
27038  return;
27039  }
27040  if (unlikely(!entries)) {
27041  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
27042  if (likely(entries)) {
27043  __pyx_code_cache.entries = entries;
27044  __pyx_code_cache.max_count = 64;
27045  __pyx_code_cache.count = 1;
27046  entries[0].code_line = code_line;
27047  entries[0].code_object = code_object;
27048  Py_INCREF(code_object);
27049  }
27050  return;
27051  }
27052  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
27053  if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
27054  PyCodeObject* tmp = entries[pos].code_object;
27055  entries[pos].code_object = code_object;
27056  Py_DECREF(tmp);
27057  return;
27058  }
27059  if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
27060  int new_max = __pyx_code_cache.max_count + 64;
27061  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
27062  __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
27063  if (unlikely(!entries)) {
27064  return;
27065  }
27066  __pyx_code_cache.entries = entries;
27067  __pyx_code_cache.max_count = new_max;
27068  }
27069  for (i=__pyx_code_cache.count; i>pos; i--) {
27070  entries[i] = entries[i-1];
27071  }
27072  entries[pos].code_line = code_line;
27073  entries[pos].code_object = code_object;
27074  __pyx_code_cache.count++;
27075  Py_INCREF(code_object);
27076 }
27077 
27078 /* AddTraceback */
27079  #include "compile.h"
27080 #include "frameobject.h"
27081 #include "traceback.h"
27082 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
27083  const char *funcname, int c_line,
27084  int py_line, const char *filename) {
27085  PyCodeObject *py_code = 0;
27086  PyObject *py_srcfile = 0;
27087  PyObject *py_funcname = 0;
27088  #if PY_MAJOR_VERSION < 3
27089  py_srcfile = PyString_FromString(filename);
27090  #else
27091  py_srcfile = PyUnicode_FromString(filename);
27092  #endif
27093  if (!py_srcfile) goto bad;
27094  if (c_line) {
27095  #if PY_MAJOR_VERSION < 3
27096  py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
27097  #else
27098  py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
27099  #endif
27100  }
27101  else {
27102  #if PY_MAJOR_VERSION < 3
27103  py_funcname = PyString_FromString(funcname);
27104  #else
27105  py_funcname = PyUnicode_FromString(funcname);
27106  #endif
27107  }
27108  if (!py_funcname) goto bad;
27109  py_code = __Pyx_PyCode_New(
27110  0,
27111  0,
27112  0,
27113  0,
27114  0,
27115  __pyx_empty_bytes, /*PyObject *code,*/
27116  __pyx_empty_tuple, /*PyObject *consts,*/
27117  __pyx_empty_tuple, /*PyObject *names,*/
27118  __pyx_empty_tuple, /*PyObject *varnames,*/
27119  __pyx_empty_tuple, /*PyObject *freevars,*/
27120  __pyx_empty_tuple, /*PyObject *cellvars,*/
27121  py_srcfile, /*PyObject *filename,*/
27122  py_funcname, /*PyObject *name,*/
27123  py_line,
27124  __pyx_empty_bytes /*PyObject *lnotab*/
27125  );
27126  Py_DECREF(py_srcfile);
27127  Py_DECREF(py_funcname);
27128  return py_code;
27129 bad:
27130  Py_XDECREF(py_srcfile);
27131  Py_XDECREF(py_funcname);
27132  return NULL;
27133 }
27134 static void __Pyx_AddTraceback(const char *funcname, int c_line,
27135  int py_line, const char *filename) {
27136  PyCodeObject *py_code = 0;
27137  PyFrameObject *py_frame = 0;
27138  PyThreadState *tstate = __Pyx_PyThreadState_Current;
27139  if (c_line) {
27140  c_line = __Pyx_CLineForTraceback(tstate, c_line);
27141  }
27142  py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
27143  if (!py_code) {
27144  py_code = __Pyx_CreateCodeObjectForTraceback(
27145  funcname, c_line, py_line, filename);
27146  if (!py_code) goto bad;
27147  __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
27148  }
27149  py_frame = PyFrame_New(
27150  tstate, /*PyThreadState *tstate,*/
27151  py_code, /*PyCodeObject *code,*/
27152  __pyx_d, /*PyObject *globals,*/
27153  0 /*PyObject *locals*/
27154  );
27155  if (!py_frame) goto bad;
27156  __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
27157  PyTraceBack_Here(py_frame);
27158 bad:
27159  Py_XDECREF(py_code);
27160  Py_XDECREF(py_frame);
27161 }
27162 
27163 #if PY_MAJOR_VERSION < 3
27164 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
27165  if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
27166  if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags);
27167  PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
27168  return -1;
27169 }
27170 static void __Pyx_ReleaseBuffer(Py_buffer *view) {
27171  PyObject *obj = view->obj;
27172  if (!obj) return;
27173  if (PyObject_CheckBuffer(obj)) {
27174  PyBuffer_Release(view);
27175  return;
27176  }
27177  if ((0)) {}
27178  else if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view);
27179  view->obj = NULL;
27180  Py_DECREF(obj);
27181 }
27182 #endif
27183 
27184 
27185  /* CIntFromPyVerify */
27186  #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
27187  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
27188 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
27189  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
27190 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
27191  {\
27192  func_type value = func_value;\
27193  if (sizeof(target_type) < sizeof(func_type)) {\
27194  if (unlikely(value != (func_type) (target_type) value)) {\
27195  func_type zero = 0;\
27196  if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
27197  return (target_type) -1;\
27198  if (is_unsigned && unlikely(value < zero))\
27199  goto raise_neg_overflow;\
27200  else\
27201  goto raise_overflow;\
27202  }\
27203  }\
27204  return (target_type) value;\
27205  }
27206 
27207 /* CIntToPy */
27208  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
27209  const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
27210  const int is_unsigned = neg_one > const_zero;
27211  if (is_unsigned) {
27212  if (sizeof(int) < sizeof(long)) {
27213  return PyInt_FromLong((long) value);
27214  } else if (sizeof(int) <= sizeof(unsigned long)) {
27215  return PyLong_FromUnsignedLong((unsigned long) value);
27216 #ifdef HAVE_LONG_LONG
27217  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
27218  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
27219 #endif
27220  }
27221  } else {
27222  if (sizeof(int) <= sizeof(long)) {
27223  return PyInt_FromLong((long) value);
27224 #ifdef HAVE_LONG_LONG
27225  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
27226  return PyLong_FromLongLong((PY_LONG_LONG) value);
27227 #endif
27228  }
27229  }
27230  {
27231  int one = 1; int little = (int)*(unsigned char *)&one;
27232  unsigned char *bytes = (unsigned char *)&value;
27233  return _PyLong_FromByteArray(bytes, sizeof(int),
27234  little, !is_unsigned);
27235  }
27236 }
27237 
27238 /* CIntToPy */
27239  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) {
27240  const Py_intptr_t neg_one = (Py_intptr_t) ((Py_intptr_t) 0 - (Py_intptr_t) 1), const_zero = (Py_intptr_t) 0;
27241  const int is_unsigned = neg_one > const_zero;
27242  if (is_unsigned) {
27243  if (sizeof(Py_intptr_t) < sizeof(long)) {
27244  return PyInt_FromLong((long) value);
27245  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) {
27246  return PyLong_FromUnsignedLong((unsigned long) value);
27247 #ifdef HAVE_LONG_LONG
27248  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) {
27249  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
27250 #endif
27251  }
27252  } else {
27253  if (sizeof(Py_intptr_t) <= sizeof(long)) {
27254  return PyInt_FromLong((long) value);
27255 #ifdef HAVE_LONG_LONG
27256  } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) {
27257  return PyLong_FromLongLong((PY_LONG_LONG) value);
27258 #endif
27259  }
27260  }
27261  {
27262  int one = 1; int little = (int)*(unsigned char *)&one;
27263  unsigned char *bytes = (unsigned char *)&value;
27264  return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t),
27265  little, !is_unsigned);
27266  }
27267 }
27268 
27269 /* CIntToPy */
27270  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
27271  const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
27272  const int is_unsigned = neg_one > const_zero;
27273  if (is_unsigned) {
27274  if (sizeof(long) < sizeof(long)) {
27275  return PyInt_FromLong((long) value);
27276  } else if (sizeof(long) <= sizeof(unsigned long)) {
27277  return PyLong_FromUnsignedLong((unsigned long) value);
27278 #ifdef HAVE_LONG_LONG
27279  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
27280  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
27281 #endif
27282  }
27283  } else {
27284  if (sizeof(long) <= sizeof(long)) {
27285  return PyInt_FromLong((long) value);
27286 #ifdef HAVE_LONG_LONG
27287  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
27288  return PyLong_FromLongLong((PY_LONG_LONG) value);
27289 #endif
27290  }
27291  }
27292  {
27293  int one = 1; int little = (int)*(unsigned char *)&one;
27294  unsigned char *bytes = (unsigned char *)&value;
27295  return _PyLong_FromByteArray(bytes, sizeof(long),
27296  little, !is_unsigned);
27297  }
27298 }
27299 
27300 /* Declarations */
27301  #if CYTHON_CCOMPLEX
27302  #ifdef __cplusplus
27303  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
27304  return ::std::complex< float >(x, y);
27305  }
27306  #else
27307  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
27308  return x + y*(__pyx_t_float_complex)_Complex_I;
27309  }
27310  #endif
27311 #else
27312  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
27313  __pyx_t_float_complex z;
27314  z.real = x;
27315  z.imag = y;
27316  return z;
27317  }
27318 #endif
27319 
27320 /* Arithmetic */
27321  #if CYTHON_CCOMPLEX
27322 #else
27323  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27324  return (a.real == b.real) && (a.imag == b.imag);
27325  }
27326  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27327  __pyx_t_float_complex z;
27328  z.real = a.real + b.real;
27329  z.imag = a.imag + b.imag;
27330  return z;
27331  }
27332  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27333  __pyx_t_float_complex z;
27334  z.real = a.real - b.real;
27335  z.imag = a.imag - b.imag;
27336  return z;
27337  }
27338  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27339  __pyx_t_float_complex z;
27340  z.real = a.real * b.real - a.imag * b.imag;
27341  z.imag = a.real * b.imag + a.imag * b.real;
27342  return z;
27343  }
27344  #if 1
27345  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27346  if (b.imag == 0) {
27347  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
27348  } else if (fabsf(b.real) >= fabsf(b.imag)) {
27349  if (b.real == 0 && b.imag == 0) {
27350  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
27351  } else {
27352  float r = b.imag / b.real;
27353  float s = (float)(1.0) / (b.real + b.imag * r);
27354  return __pyx_t_float_complex_from_parts(
27355  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
27356  }
27357  } else {
27358  float r = b.real / b.imag;
27359  float s = (float)(1.0) / (b.imag + b.real * r);
27360  return __pyx_t_float_complex_from_parts(
27361  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
27362  }
27363  }
27364  #else
27365  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27366  if (b.imag == 0) {
27367  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
27368  } else {
27369  float denom = b.real * b.real + b.imag * b.imag;
27370  return __pyx_t_float_complex_from_parts(
27371  (a.real * b.real + a.imag * b.imag) / denom,
27372  (a.imag * b.real - a.real * b.imag) / denom);
27373  }
27374  }
27375  #endif
27376  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
27377  __pyx_t_float_complex z;
27378  z.real = -a.real;
27379  z.imag = -a.imag;
27380  return z;
27381  }
27382  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
27383  return (a.real == 0) && (a.imag == 0);
27384  }
27385  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
27386  __pyx_t_float_complex z;
27387  z.real = a.real;
27388  z.imag = -a.imag;
27389  return z;
27390  }
27391  #if 1
27392  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
27393  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
27394  return sqrtf(z.real*z.real + z.imag*z.imag);
27395  #else
27396  return hypotf(z.real, z.imag);
27397  #endif
27398  }
27399  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
27400  __pyx_t_float_complex z;
27401  float r, lnr, theta, z_r, z_theta;
27402  if (b.imag == 0 && b.real == (int)b.real) {
27403  if (b.real < 0) {
27404  float denom = a.real * a.real + a.imag * a.imag;
27405  a.real = a.real / denom;
27406  a.imag = -a.imag / denom;
27407  b.real = -b.real;
27408  }
27409  switch ((int)b.real) {
27410  case 0:
27411  z.real = 1;
27412  z.imag = 0;
27413  return z;
27414  case 1:
27415  return a;
27416  case 2:
27417  return __Pyx_c_prod_float(a, a);
27418  case 3:
27419  z = __Pyx_c_prod_float(a, a);
27420  return __Pyx_c_prod_float(z, a);
27421  case 4:
27422  z = __Pyx_c_prod_float(a, a);
27423  return __Pyx_c_prod_float(z, z);
27424  }
27425  }
27426  if (a.imag == 0) {
27427  if (a.real == 0) {
27428  return a;
27429  } else if (b.imag == 0) {
27430  z.real = powf(a.real, b.real);
27431  z.imag = 0;
27432  return z;
27433  } else if (a.real > 0) {
27434  r = a.real;
27435  theta = 0;
27436  } else {
27437  r = -a.real;
27438  theta = atan2f(0.0, -1.0);
27439  }
27440  } else {
27441  r = __Pyx_c_abs_float(a);
27442  theta = atan2f(a.imag, a.real);
27443  }
27444  lnr = logf(r);
27445  z_r = expf(lnr * b.real - theta * b.imag);
27446  z_theta = theta * b.real + lnr * b.imag;
27447  z.real = z_r * cosf(z_theta);
27448  z.imag = z_r * sinf(z_theta);
27449  return z;
27450  }
27451  #endif
27452 #endif
27453 
27454 /* Declarations */
27455  #if CYTHON_CCOMPLEX
27456  #ifdef __cplusplus
27457  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
27458  return ::std::complex< double >(x, y);
27459  }
27460  #else
27461  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
27462  return x + y*(__pyx_t_double_complex)_Complex_I;
27463  }
27464  #endif
27465 #else
27466  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
27467  __pyx_t_double_complex z;
27468  z.real = x;
27469  z.imag = y;
27470  return z;
27471  }
27472 #endif
27473 
27474 /* Arithmetic */
27475  #if CYTHON_CCOMPLEX
27476 #else
27477  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27478  return (a.real == b.real) && (a.imag == b.imag);
27479  }
27480  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27481  __pyx_t_double_complex z;
27482  z.real = a.real + b.real;
27483  z.imag = a.imag + b.imag;
27484  return z;
27485  }
27486  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27487  __pyx_t_double_complex z;
27488  z.real = a.real - b.real;
27489  z.imag = a.imag - b.imag;
27490  return z;
27491  }
27492  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27493  __pyx_t_double_complex z;
27494  z.real = a.real * b.real - a.imag * b.imag;
27495  z.imag = a.real * b.imag + a.imag * b.real;
27496  return z;
27497  }
27498  #if 1
27499  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27500  if (b.imag == 0) {
27501  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
27502  } else if (fabs(b.real) >= fabs(b.imag)) {
27503  if (b.real == 0 && b.imag == 0) {
27504  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
27505  } else {
27506  double r = b.imag / b.real;
27507  double s = (double)(1.0) / (b.real + b.imag * r);
27508  return __pyx_t_double_complex_from_parts(
27509  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
27510  }
27511  } else {
27512  double r = b.real / b.imag;
27513  double s = (double)(1.0) / (b.imag + b.real * r);
27514  return __pyx_t_double_complex_from_parts(
27515  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
27516  }
27517  }
27518  #else
27519  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27520  if (b.imag == 0) {
27521  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
27522  } else {
27523  double denom = b.real * b.real + b.imag * b.imag;
27524  return __pyx_t_double_complex_from_parts(
27525  (a.real * b.real + a.imag * b.imag) / denom,
27526  (a.imag * b.real - a.real * b.imag) / denom);
27527  }
27528  }
27529  #endif
27530  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
27531  __pyx_t_double_complex z;
27532  z.real = -a.real;
27533  z.imag = -a.imag;
27534  return z;
27535  }
27536  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
27537  return (a.real == 0) && (a.imag == 0);
27538  }
27539  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
27540  __pyx_t_double_complex z;
27541  z.real = a.real;
27542  z.imag = -a.imag;
27543  return z;
27544  }
27545  #if 1
27546  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
27547  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
27548  return sqrt(z.real*z.real + z.imag*z.imag);
27549  #else
27550  return hypot(z.real, z.imag);
27551  #endif
27552  }
27553  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
27554  __pyx_t_double_complex z;
27555  double r, lnr, theta, z_r, z_theta;
27556  if (b.imag == 0 && b.real == (int)b.real) {
27557  if (b.real < 0) {
27558  double denom = a.real * a.real + a.imag * a.imag;
27559  a.real = a.real / denom;
27560  a.imag = -a.imag / denom;
27561  b.real = -b.real;
27562  }
27563  switch ((int)b.real) {
27564  case 0:
27565  z.real = 1;
27566  z.imag = 0;
27567  return z;
27568  case 1:
27569  return a;
27570  case 2:
27571  return __Pyx_c_prod_double(a, a);
27572  case 3:
27573  z = __Pyx_c_prod_double(a, a);
27574  return __Pyx_c_prod_double(z, a);
27575  case 4:
27576  z = __Pyx_c_prod_double(a, a);
27577  return __Pyx_c_prod_double(z, z);
27578  }
27579  }
27580  if (a.imag == 0) {
27581  if (a.real == 0) {
27582  return a;
27583  } else if (b.imag == 0) {
27584  z.real = pow(a.real, b.real);
27585  z.imag = 0;
27586  return z;
27587  } else if (a.real > 0) {
27588  r = a.real;
27589  theta = 0;
27590  } else {
27591  r = -a.real;
27592  theta = atan2(0.0, -1.0);
27593  }
27594  } else {
27595  r = __Pyx_c_abs_double(a);
27596  theta = atan2(a.imag, a.real);
27597  }
27598  lnr = log(r);
27599  z_r = exp(lnr * b.real - theta * b.imag);
27600  z_theta = theta * b.real + lnr * b.imag;
27601  z.real = z_r * cos(z_theta);
27602  z.imag = z_r * sin(z_theta);
27603  return z;
27604  }
27605  #endif
27606 #endif
27607 
27608 /* CIntToPy */
27609  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) {
27610  const enum NPY_TYPES neg_one = (enum NPY_TYPES) ((enum NPY_TYPES) 0 - (enum NPY_TYPES) 1), const_zero = (enum NPY_TYPES) 0;
27611  const int is_unsigned = neg_one > const_zero;
27612  if (is_unsigned) {
27613  if (sizeof(enum NPY_TYPES) < sizeof(long)) {
27614  return PyInt_FromLong((long) value);
27615  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) {
27616  return PyLong_FromUnsignedLong((unsigned long) value);
27617 #ifdef HAVE_LONG_LONG
27618  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) {
27619  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
27620 #endif
27621  }
27622  } else {
27623  if (sizeof(enum NPY_TYPES) <= sizeof(long)) {
27624  return PyInt_FromLong((long) value);
27625 #ifdef HAVE_LONG_LONG
27626  } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) {
27627  return PyLong_FromLongLong((PY_LONG_LONG) value);
27628 #endif
27629  }
27630  }
27631  {
27632  int one = 1; int little = (int)*(unsigned char *)&one;
27633  unsigned char *bytes = (unsigned char *)&value;
27634  return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES),
27635  little, !is_unsigned);
27636  }
27637 }
27638 
27639 /* CIntFromPy */
27640  static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
27641  const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
27642  const int is_unsigned = neg_one > const_zero;
27643 #if PY_MAJOR_VERSION < 3
27644  if (likely(PyInt_Check(x))) {
27645  if (sizeof(int) < sizeof(long)) {
27646  __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
27647  } else {
27648  long val = PyInt_AS_LONG(x);
27649  if (is_unsigned && unlikely(val < 0)) {
27650  goto raise_neg_overflow;
27651  }
27652  return (int) val;
27653  }
27654  } else
27655 #endif
27656  if (likely(PyLong_Check(x))) {
27657  if (is_unsigned) {
27658 #if CYTHON_USE_PYLONG_INTERNALS
27659  const digit* digits = ((PyLongObject*)x)->ob_digit;
27660  switch (Py_SIZE(x)) {
27661  case 0: return (int) 0;
27662  case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
27663  case 2:
27664  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
27665  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27666  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27667  } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
27668  return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
27669  }
27670  }
27671  break;
27672  case 3:
27673  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
27674  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27675  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27676  } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
27677  return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
27678  }
27679  }
27680  break;
27681  case 4:
27682  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
27683  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27684  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27685  } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
27686  return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
27687  }
27688  }
27689  break;
27690  }
27691 #endif
27692 #if CYTHON_COMPILING_IN_CPYTHON
27693  if (unlikely(Py_SIZE(x) < 0)) {
27694  goto raise_neg_overflow;
27695  }
27696 #else
27697  {
27698  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
27699  if (unlikely(result < 0))
27700  return (int) -1;
27701  if (unlikely(result == 1))
27702  goto raise_neg_overflow;
27703  }
27704 #endif
27705  if (sizeof(int) <= sizeof(unsigned long)) {
27706  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
27707 #ifdef HAVE_LONG_LONG
27708  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
27709  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
27710 #endif
27711  }
27712  } else {
27713 #if CYTHON_USE_PYLONG_INTERNALS
27714  const digit* digits = ((PyLongObject*)x)->ob_digit;
27715  switch (Py_SIZE(x)) {
27716  case 0: return (int) 0;
27717  case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
27718  case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
27719  case -2:
27720  if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
27721  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27722  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27723  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
27724  return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27725  }
27726  }
27727  break;
27728  case 2:
27729  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
27730  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27731  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27732  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
27733  return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27734  }
27735  }
27736  break;
27737  case -3:
27738  if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
27739  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27740  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27741  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
27742  return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27743  }
27744  }
27745  break;
27746  case 3:
27747  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
27748  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27749  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27750  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
27751  return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27752  }
27753  }
27754  break;
27755  case -4:
27756  if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
27757  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27758  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27759  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
27760  return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27761  }
27762  }
27763  break;
27764  case 4:
27765  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
27766  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27767  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27768  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
27769  return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
27770  }
27771  }
27772  break;
27773  }
27774 #endif
27775  if (sizeof(int) <= sizeof(long)) {
27776  __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
27777 #ifdef HAVE_LONG_LONG
27778  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
27779  __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
27780 #endif
27781  }
27782  }
27783  {
27784 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
27785  PyErr_SetString(PyExc_RuntimeError,
27786  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
27787 #else
27788  int val;
27789  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
27790  #if PY_MAJOR_VERSION < 3
27791  if (likely(v) && !PyLong_Check(v)) {
27792  PyObject *tmp = v;
27793  v = PyNumber_Long(tmp);
27794  Py_DECREF(tmp);
27795  }
27796  #endif
27797  if (likely(v)) {
27798  int one = 1; int is_little = (int)*(unsigned char *)&one;
27799  unsigned char *bytes = (unsigned char *)&val;
27800  int ret = _PyLong_AsByteArray((PyLongObject *)v,
27801  bytes, sizeof(val),
27802  is_little, !is_unsigned);
27803  Py_DECREF(v);
27804  if (likely(!ret))
27805  return val;
27806  }
27807 #endif
27808  return (int) -1;
27809  }
27810  } else {
27811  int val;
27812  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
27813  if (!tmp) return (int) -1;
27814  val = __Pyx_PyInt_As_int(tmp);
27815  Py_DECREF(tmp);
27816  return val;
27817  }
27818 raise_overflow:
27819  PyErr_SetString(PyExc_OverflowError,
27820  "value too large to convert to int");
27821  return (int) -1;
27822 raise_neg_overflow:
27823  PyErr_SetString(PyExc_OverflowError,
27824  "can't convert negative value to int");
27825  return (int) -1;
27826 }
27827 
27828 /* CIntFromPy */
27829  static CYTHON_INLINE Py_intptr_t __Pyx_PyInt_As_Py_intptr_t(PyObject *x) {
27830  const Py_intptr_t neg_one = (Py_intptr_t) ((Py_intptr_t) 0 - (Py_intptr_t) 1), const_zero = (Py_intptr_t) 0;
27831  const int is_unsigned = neg_one > const_zero;
27832 #if PY_MAJOR_VERSION < 3
27833  if (likely(PyInt_Check(x))) {
27834  if (sizeof(Py_intptr_t) < sizeof(long)) {
27835  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, PyInt_AS_LONG(x))
27836  } else {
27837  long val = PyInt_AS_LONG(x);
27838  if (is_unsigned && unlikely(val < 0)) {
27839  goto raise_neg_overflow;
27840  }
27841  return (Py_intptr_t) val;
27842  }
27843  } else
27844 #endif
27845  if (likely(PyLong_Check(x))) {
27846  if (is_unsigned) {
27847 #if CYTHON_USE_PYLONG_INTERNALS
27848  const digit* digits = ((PyLongObject*)x)->ob_digit;
27849  switch (Py_SIZE(x)) {
27850  case 0: return (Py_intptr_t) 0;
27851  case 1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, digit, digits[0])
27852  case 2:
27853  if (8 * sizeof(Py_intptr_t) > 1 * PyLong_SHIFT) {
27854  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27855  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27856  } else if (8 * sizeof(Py_intptr_t) >= 2 * PyLong_SHIFT) {
27857  return (Py_intptr_t) (((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
27858  }
27859  }
27860  break;
27861  case 3:
27862  if (8 * sizeof(Py_intptr_t) > 2 * PyLong_SHIFT) {
27863  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27864  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27865  } else if (8 * sizeof(Py_intptr_t) >= 3 * PyLong_SHIFT) {
27866  return (Py_intptr_t) (((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
27867  }
27868  }
27869  break;
27870  case 4:
27871  if (8 * sizeof(Py_intptr_t) > 3 * PyLong_SHIFT) {
27872  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27873  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27874  } else if (8 * sizeof(Py_intptr_t) >= 4 * PyLong_SHIFT) {
27875  return (Py_intptr_t) (((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0]));
27876  }
27877  }
27878  break;
27879  }
27880 #endif
27881 #if CYTHON_COMPILING_IN_CPYTHON
27882  if (unlikely(Py_SIZE(x) < 0)) {
27883  goto raise_neg_overflow;
27884  }
27885 #else
27886  {
27887  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
27888  if (unlikely(result < 0))
27889  return (Py_intptr_t) -1;
27890  if (unlikely(result == 1))
27891  goto raise_neg_overflow;
27892  }
27893 #endif
27894  if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) {
27895  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, unsigned long, PyLong_AsUnsignedLong(x))
27896 #ifdef HAVE_LONG_LONG
27897  } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) {
27898  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
27899 #endif
27900  }
27901  } else {
27902 #if CYTHON_USE_PYLONG_INTERNALS
27903  const digit* digits = ((PyLongObject*)x)->ob_digit;
27904  switch (Py_SIZE(x)) {
27905  case 0: return (Py_intptr_t) 0;
27906  case -1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, sdigit, (sdigit) (-(sdigit)digits[0]))
27907  case 1: __PYX_VERIFY_RETURN_INT(Py_intptr_t, digit, +digits[0])
27908  case -2:
27909  if (8 * sizeof(Py_intptr_t) - 1 > 1 * PyLong_SHIFT) {
27910  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27911  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27912  } else if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
27913  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27914  }
27915  }
27916  break;
27917  case 2:
27918  if (8 * sizeof(Py_intptr_t) > 1 * PyLong_SHIFT) {
27919  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
27920  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27921  } else if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
27922  return (Py_intptr_t) ((((((Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27923  }
27924  }
27925  break;
27926  case -3:
27927  if (8 * sizeof(Py_intptr_t) - 1 > 2 * PyLong_SHIFT) {
27928  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27929  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27930  } else if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
27931  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27932  }
27933  }
27934  break;
27935  case 3:
27936  if (8 * sizeof(Py_intptr_t) > 2 * PyLong_SHIFT) {
27937  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
27938  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27939  } else if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
27940  return (Py_intptr_t) ((((((((Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27941  }
27942  }
27943  break;
27944  case -4:
27945  if (8 * sizeof(Py_intptr_t) - 1 > 3 * PyLong_SHIFT) {
27946  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27947  __PYX_VERIFY_RETURN_INT(Py_intptr_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27948  } else if (8 * sizeof(Py_intptr_t) - 1 > 4 * PyLong_SHIFT) {
27949  return (Py_intptr_t) (((Py_intptr_t)-1)*(((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27950  }
27951  }
27952  break;
27953  case 4:
27954  if (8 * sizeof(Py_intptr_t) > 3 * PyLong_SHIFT) {
27955  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
27956  __PYX_VERIFY_RETURN_INT(Py_intptr_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
27957  } else if (8 * sizeof(Py_intptr_t) - 1 > 4 * PyLong_SHIFT) {
27958  return (Py_intptr_t) ((((((((((Py_intptr_t)digits[3]) << PyLong_SHIFT) | (Py_intptr_t)digits[2]) << PyLong_SHIFT) | (Py_intptr_t)digits[1]) << PyLong_SHIFT) | (Py_intptr_t)digits[0])));
27959  }
27960  }
27961  break;
27962  }
27963 #endif
27964  if (sizeof(Py_intptr_t) <= sizeof(long)) {
27965  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, long, PyLong_AsLong(x))
27966 #ifdef HAVE_LONG_LONG
27967  } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) {
27968  __PYX_VERIFY_RETURN_INT_EXC(Py_intptr_t, PY_LONG_LONG, PyLong_AsLongLong(x))
27969 #endif
27970  }
27971  }
27972  {
27973 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
27974  PyErr_SetString(PyExc_RuntimeError,
27975  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
27976 #else
27977  Py_intptr_t val;
27978  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
27979  #if PY_MAJOR_VERSION < 3
27980  if (likely(v) && !PyLong_Check(v)) {
27981  PyObject *tmp = v;
27982  v = PyNumber_Long(tmp);
27983  Py_DECREF(tmp);
27984  }
27985  #endif
27986  if (likely(v)) {
27987  int one = 1; int is_little = (int)*(unsigned char *)&one;
27988  unsigned char *bytes = (unsigned char *)&val;
27989  int ret = _PyLong_AsByteArray((PyLongObject *)v,
27990  bytes, sizeof(val),
27991  is_little, !is_unsigned);
27992  Py_DECREF(v);
27993  if (likely(!ret))
27994  return val;
27995  }
27996 #endif
27997  return (Py_intptr_t) -1;
27998  }
27999  } else {
28000  Py_intptr_t val;
28001  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
28002  if (!tmp) return (Py_intptr_t) -1;
28003  val = __Pyx_PyInt_As_Py_intptr_t(tmp);
28004  Py_DECREF(tmp);
28005  return val;
28006  }
28007 raise_overflow:
28008  PyErr_SetString(PyExc_OverflowError,
28009  "value too large to convert to Py_intptr_t");
28010  return (Py_intptr_t) -1;
28011 raise_neg_overflow:
28012  PyErr_SetString(PyExc_OverflowError,
28013  "can't convert negative value to Py_intptr_t");
28014  return (Py_intptr_t) -1;
28015 }
28016 
28017 /* CIntFromPy */
28018  static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
28019  const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
28020  const int is_unsigned = neg_one > const_zero;
28021 #if PY_MAJOR_VERSION < 3
28022  if (likely(PyInt_Check(x))) {
28023  if (sizeof(long) < sizeof(long)) {
28024  __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
28025  } else {
28026  long val = PyInt_AS_LONG(x);
28027  if (is_unsigned && unlikely(val < 0)) {
28028  goto raise_neg_overflow;
28029  }
28030  return (long) val;
28031  }
28032  } else
28033 #endif
28034  if (likely(PyLong_Check(x))) {
28035  if (is_unsigned) {
28036 #if CYTHON_USE_PYLONG_INTERNALS
28037  const digit* digits = ((PyLongObject*)x)->ob_digit;
28038  switch (Py_SIZE(x)) {
28039  case 0: return (long) 0;
28040  case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
28041  case 2:
28042  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
28043  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
28044  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28045  } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
28046  return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
28047  }
28048  }
28049  break;
28050  case 3:
28051  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
28052  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
28053  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28054  } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
28055  return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
28056  }
28057  }
28058  break;
28059  case 4:
28060  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
28061  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
28062  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28063  } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
28064  return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
28065  }
28066  }
28067  break;
28068  }
28069 #endif
28070 #if CYTHON_COMPILING_IN_CPYTHON
28071  if (unlikely(Py_SIZE(x) < 0)) {
28072  goto raise_neg_overflow;
28073  }
28074 #else
28075  {
28076  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
28077  if (unlikely(result < 0))
28078  return (long) -1;
28079  if (unlikely(result == 1))
28080  goto raise_neg_overflow;
28081  }
28082 #endif
28083  if (sizeof(long) <= sizeof(unsigned long)) {
28084  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
28085 #ifdef HAVE_LONG_LONG
28086  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
28087  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
28088 #endif
28089  }
28090  } else {
28091 #if CYTHON_USE_PYLONG_INTERNALS
28092  const digit* digits = ((PyLongObject*)x)->ob_digit;
28093  switch (Py_SIZE(x)) {
28094  case 0: return (long) 0;
28095  case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
28096  case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
28097  case -2:
28098  if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
28099  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
28100  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28101  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
28102  return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28103  }
28104  }
28105  break;
28106  case 2:
28107  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
28108  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
28109  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28110  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
28111  return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28112  }
28113  }
28114  break;
28115  case -3:
28116  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
28117  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
28118  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28119  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
28120  return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28121  }
28122  }
28123  break;
28124  case 3:
28125  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
28126  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
28127  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28128  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
28129  return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28130  }
28131  }
28132  break;
28133  case -4:
28134  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
28135  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
28136  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28137  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
28138  return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28139  }
28140  }
28141  break;
28142  case 4:
28143  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
28144  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
28145  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
28146  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
28147  return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
28148  }
28149  }
28150  break;
28151  }
28152 #endif
28153  if (sizeof(long) <= sizeof(long)) {
28154  __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
28155 #ifdef HAVE_LONG_LONG
28156  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
28157  __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
28158 #endif
28159  }
28160  }
28161  {
28162 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
28163  PyErr_SetString(PyExc_RuntimeError,
28164  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
28165 #else
28166  long val;
28167  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
28168  #if PY_MAJOR_VERSION < 3
28169  if (likely(v) && !PyLong_Check(v)) {
28170  PyObject *tmp = v;
28171  v = PyNumber_Long(tmp);
28172  Py_DECREF(tmp);
28173  }
28174  #endif
28175  if (likely(v)) {
28176  int one = 1; int is_little = (int)*(unsigned char *)&one;
28177  unsigned char *bytes = (unsigned char *)&val;
28178  int ret = _PyLong_AsByteArray((PyLongObject *)v,
28179  bytes, sizeof(val),
28180  is_little, !is_unsigned);
28181  Py_DECREF(v);
28182  if (likely(!ret))
28183  return val;
28184  }
28185 #endif
28186  return (long) -1;
28187  }
28188  } else {
28189  long val;
28190  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
28191  if (!tmp) return (long) -1;
28192  val = __Pyx_PyInt_As_long(tmp);
28193  Py_DECREF(tmp);
28194  return val;
28195  }
28196 raise_overflow:
28197  PyErr_SetString(PyExc_OverflowError,
28198  "value too large to convert to long");
28199  return (long) -1;
28200 raise_neg_overflow:
28201  PyErr_SetString(PyExc_OverflowError,
28202  "can't convert negative value to long");
28203  return (long) -1;
28204 }
28205 
28206 /* FastTypeChecks */
28207  #if CYTHON_COMPILING_IN_CPYTHON
28208 static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
28209  while (a) {
28210  a = a->tp_base;
28211  if (a == b)
28212  return 1;
28213  }
28214  return b == &PyBaseObject_Type;
28215 }
28216 static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
28217  PyObject *mro;
28218  if (a == b) return 1;
28219  mro = a->tp_mro;
28220  if (likely(mro)) {
28221  Py_ssize_t i, n;
28222  n = PyTuple_GET_SIZE(mro);
28223  for (i = 0; i < n; i++) {
28224  if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
28225  return 1;
28226  }
28227  return 0;
28228  }
28229  return __Pyx_InBases(a, b);
28230 }
28231 #if PY_MAJOR_VERSION == 2
28232 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
28233  PyObject *exception, *value, *tb;
28234  int res;
28235  __Pyx_PyThreadState_declare
28236  __Pyx_PyThreadState_assign
28237  __Pyx_ErrFetch(&exception, &value, &tb);
28238  res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
28239  if (unlikely(res == -1)) {
28240  PyErr_WriteUnraisable(err);
28241  res = 0;
28242  }
28243  if (!res) {
28244  res = PyObject_IsSubclass(err, exc_type2);
28245  if (unlikely(res == -1)) {
28246  PyErr_WriteUnraisable(err);
28247  res = 0;
28248  }
28249  }
28250  __Pyx_ErrRestore(exception, value, tb);
28251  return res;
28252 }
28253 #else
28254 static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
28255  int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
28256  if (!res) {
28257  res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
28258  }
28259  return res;
28260 }
28261 #endif
28262 static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
28263  Py_ssize_t i, n;
28264  assert(PyExceptionClass_Check(exc_type));
28265  n = PyTuple_GET_SIZE(tuple);
28266 #if PY_MAJOR_VERSION >= 3
28267  for (i=0; i<n; i++) {
28268  if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
28269  }
28270 #endif
28271  for (i=0; i<n; i++) {
28272  PyObject *t = PyTuple_GET_ITEM(tuple, i);
28273  #if PY_MAJOR_VERSION < 3
28274  if (likely(exc_type == t)) return 1;
28275  #endif
28276  if (likely(PyExceptionClass_Check(t))) {
28277  if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
28278  } else {
28279  }
28280  }
28281  return 0;
28282 }
28283 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
28284  if (likely(err == exc_type)) return 1;
28285  if (likely(PyExceptionClass_Check(err))) {
28286  if (likely(PyExceptionClass_Check(exc_type))) {
28287  return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
28288  } else if (likely(PyTuple_Check(exc_type))) {
28289  return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
28290  } else {
28291  }
28292  }
28293  return PyErr_GivenExceptionMatches(err, exc_type);
28294 }
28295 static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
28296  assert(PyExceptionClass_Check(exc_type1));
28297  assert(PyExceptionClass_Check(exc_type2));
28298  if (likely(err == exc_type1 || err == exc_type2)) return 1;
28299  if (likely(PyExceptionClass_Check(err))) {
28300  return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
28301  }
28302  return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
28303 }
28304 #endif
28305 
28306 /* CheckBinaryVersion */
28307  static int __Pyx_check_binary_version(void) {
28308  char ctversion[4], rtversion[4];
28309  PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
28310  PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
28311  if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
28312  char message[200];
28313  PyOS_snprintf(message, sizeof(message),
28314  "compiletime version %s of module '%.100s' "
28315  "does not match runtime version %s",
28316  ctversion, __Pyx_MODULE_NAME, rtversion);
28317  return PyErr_WarnEx(NULL, message, 1);
28318  }
28319  return 0;
28320 }
28321 
28322 /* InitStrings */
28323  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
28324  while (t->p) {
28325  #if PY_MAJOR_VERSION < 3
28326  if (t->is_unicode) {
28327  *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
28328  } else if (t->intern) {
28329  *t->p = PyString_InternFromString(t->s);
28330  } else {
28331  *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
28332  }
28333  #else
28334  if (t->is_unicode | t->is_str) {
28335  if (t->intern) {
28336  *t->p = PyUnicode_InternFromString(t->s);
28337  } else if (t->encoding) {
28338  *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
28339  } else {
28340  *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
28341  }
28342  } else {
28343  *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
28344  }
28345  #endif
28346  if (!*t->p)
28347  return -1;
28348  if (PyObject_Hash(*t->p) == -1)
28349  return -1;
28350  ++t;
28351  }
28352  return 0;
28353 }
28354 
28355 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
28356  return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
28357 }
28358 static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
28359  Py_ssize_t ignore;
28360  return __Pyx_PyObject_AsStringAndSize(o, &ignore);
28361 }
28362 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
28363 #if !CYTHON_PEP393_ENABLED
28364 static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
28365  char* defenc_c;
28366  PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
28367  if (!defenc) return NULL;
28368  defenc_c = PyBytes_AS_STRING(defenc);
28369 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
28370  {
28371  char* end = defenc_c + PyBytes_GET_SIZE(defenc);
28372  char* c;
28373  for (c = defenc_c; c < end; c++) {
28374  if ((unsigned char) (*c) >= 128) {
28375  PyUnicode_AsASCIIString(o);
28376  return NULL;
28377  }
28378  }
28379  }
28380 #endif
28381  *length = PyBytes_GET_SIZE(defenc);
28382  return defenc_c;
28383 }
28384 #else
28385 static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
28386  if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
28387 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
28388  if (likely(PyUnicode_IS_ASCII(o))) {
28389  *length = PyUnicode_GET_LENGTH(o);
28390  return PyUnicode_AsUTF8(o);
28391  } else {
28392  PyUnicode_AsASCIIString(o);
28393  return NULL;
28394  }
28395 #else
28396  return PyUnicode_AsUTF8AndSize(o, length);
28397 #endif
28398 }
28399 #endif
28400 #endif
28401 static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
28402 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
28403  if (
28404 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
28405  __Pyx_sys_getdefaultencoding_not_ascii &&
28406 #endif
28407  PyUnicode_Check(o)) {
28408  return __Pyx_PyUnicode_AsStringAndSize(o, length);
28409  } else
28410 #endif
28411 #if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
28412  if (PyByteArray_Check(o)) {
28413  *length = PyByteArray_GET_SIZE(o);
28414  return PyByteArray_AS_STRING(o);
28415  } else
28416 #endif
28417  {
28418  char* result;
28419  int r = PyBytes_AsStringAndSize(o, &result, length);
28420  if (unlikely(r < 0)) {
28421  return NULL;
28422  } else {
28423  return result;
28424  }
28425  }
28426 }
28427 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
28428  int is_true = x == Py_True;
28429  if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
28430  else return PyObject_IsTrue(x);
28431 }
28432 static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
28433  int retval;
28434  if (unlikely(!x)) return -1;
28435  retval = __Pyx_PyObject_IsTrue(x);
28436  Py_DECREF(x);
28437  return retval;
28438 }
28439 static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
28440 #if PY_MAJOR_VERSION >= 3
28441  if (PyLong_Check(result)) {
28442  if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
28443  "__int__ returned non-int (type %.200s). "
28444  "The ability to return an instance of a strict subclass of int "
28445  "is deprecated, and may be removed in a future version of Python.",
28446  Py_TYPE(result)->tp_name)) {
28447  Py_DECREF(result);
28448  return NULL;
28449  }
28450  return result;
28451  }
28452 #endif
28453  PyErr_Format(PyExc_TypeError,
28454  "__%.4s__ returned non-%.4s (type %.200s)",
28455  type_name, type_name, Py_TYPE(result)->tp_name);
28456  Py_DECREF(result);
28457  return NULL;
28458 }
28459 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
28460 #if CYTHON_USE_TYPE_SLOTS
28461  PyNumberMethods *m;
28462 #endif
28463  const char *name = NULL;
28464  PyObject *res = NULL;
28465 #if PY_MAJOR_VERSION < 3
28466  if (likely(PyInt_Check(x) || PyLong_Check(x)))
28467 #else
28468  if (likely(PyLong_Check(x)))
28469 #endif
28470  return __Pyx_NewRef(x);
28471 #if CYTHON_USE_TYPE_SLOTS
28472  m = Py_TYPE(x)->tp_as_number;
28473  #if PY_MAJOR_VERSION < 3
28474  if (m && m->nb_int) {
28475  name = "int";
28476  res = m->nb_int(x);
28477  }
28478  else if (m && m->nb_long) {
28479  name = "long";
28480  res = m->nb_long(x);
28481  }
28482  #else
28483  if (likely(m && m->nb_int)) {
28484  name = "int";
28485  res = m->nb_int(x);
28486  }
28487  #endif
28488 #else
28489  if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
28490  res = PyNumber_Int(x);
28491  }
28492 #endif
28493  if (likely(res)) {
28494 #if PY_MAJOR_VERSION < 3
28495  if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
28496 #else
28497  if (unlikely(!PyLong_CheckExact(res))) {
28498 #endif
28499  return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
28500  }
28501  }
28502  else if (!PyErr_Occurred()) {
28503  PyErr_SetString(PyExc_TypeError,
28504  "an integer is required");
28505  }
28506  return res;
28507 }
28508 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
28509  Py_ssize_t ival;
28510  PyObject *x;
28511 #if PY_MAJOR_VERSION < 3
28512  if (likely(PyInt_CheckExact(b))) {
28513  if (sizeof(Py_ssize_t) >= sizeof(long))
28514  return PyInt_AS_LONG(b);
28515  else
28516  return PyInt_AsSsize_t(b);
28517  }
28518 #endif
28519  if (likely(PyLong_CheckExact(b))) {
28520  #if CYTHON_USE_PYLONG_INTERNALS
28521  const digit* digits = ((PyLongObject*)b)->ob_digit;
28522  const Py_ssize_t size = Py_SIZE(b);
28523  if (likely(__Pyx_sst_abs(size) <= 1)) {
28524  ival = likely(size) ? digits[0] : 0;
28525  if (size == -1) ival = -ival;
28526  return ival;
28527  } else {
28528  switch (size) {
28529  case 2:
28530  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
28531  return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28532  }
28533  break;
28534  case -2:
28535  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
28536  return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28537  }
28538  break;
28539  case 3:
28540  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
28541  return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28542  }
28543  break;
28544  case -3:
28545  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
28546  return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28547  }
28548  break;
28549  case 4:
28550  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
28551  return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28552  }
28553  break;
28554  case -4:
28555  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
28556  return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
28557  }
28558  break;
28559  }
28560  }
28561  #endif
28562  return PyLong_AsSsize_t(b);
28563  }
28564  x = PyNumber_Index(b);
28565  if (!x) return -1;
28566  ival = PyInt_AsSsize_t(x);
28567  Py_DECREF(x);
28568  return ival;
28569 }
28570 static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
28571  return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
28572 }
28573 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
28574  return PyInt_FromSize_t(ival);
28575 }
28576 
28577 
28578 #endif /* Py_PYTHON_H */
c
Double c
Definition: Headers.h:53
f
Double f
Definition: Headers.h:53
pos
double pos(double a)
Definition: testFMMandFSW.cpp:8
z
Double * z
Definition: Headers.h:40
n
Int n
Definition: Headers.h:27
s
Double s
Definition: Headers.h:53
number
Int number
Definition: Headers.h:27
u
Double u
Definition: Headers.h:53
v
Double v
Definition: Headers.h:53
r
Double r
Definition: Headers.h:53
T
Double T
Definition: Headers.h:53
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